HEADER OXIDOREDUCTASE 26-APR-19 6RJ6 TITLE CRYSTAL STRUCTURE OF PHGDH IN COMPLEX WITH BI-4924 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-3-PHOSPHOGLYCERATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-PGDH,2-OXOGLUTARATE REDUCTASE,MALATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.95,1.1.1.399,1.1.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHGDH, PGDH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-LIGAND COMPLEX, DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.BADER,B.WOLKERSTORFER,A.ZOEPHEL REVDAT 4 24-JAN-24 6RJ6 1 REMARK REVDAT 3 25-SEP-19 6RJ6 1 JRNL REVDAT 2 14-AUG-19 6RJ6 1 JRNL REVDAT 1 07-AUG-19 6RJ6 0 JRNL AUTH H.WEINSTABL,M.TREU,J.RINNENTHAL,S.K.ZAHN,P.ETTMAYER,G.BADER, JRNL AUTH 2 G.DAHMANN,D.KESSLER,K.RUMPEL,N.MISCHERIKOW,F.SAVARESE, JRNL AUTH 3 T.GERSTBERGER,M.MAYER,A.ZOEPHEL,R.SCHNITZER,W.SOMMERGRUBER, JRNL AUTH 4 P.MARTINELLI,H.ARNHOF,B.PERIC-SIMOV,K.S.HOFBAUER,G.GARAVEL, JRNL AUTH 5 Y.SCHERBANTIN,S.MITZNER,T.N.FETT,G.SCHOLZ,J.BRUCHHAUS, JRNL AUTH 6 M.BURKARD,R.KOUSEK,T.CIFTCI,B.SHARPS,A.SCHRENK,C.HARRER, JRNL AUTH 7 D.HAERING,B.WOLKERSTORFER,X.ZHANG,X.LV,A.DU,D.LI,Y.LI, JRNL AUTH 8 J.QUANT,M.PEARSON,D.B.MCCONNELL JRNL TITL INTRACELLULAR TRAPPING OF THE SELECTIVE PHOSPHOGLYCERATE JRNL TITL 2 DEHYDROGENASE (PHGDH) INHIBITORBI-4924DISRUPTS SERINE JRNL TITL 3 BIOSYNTHESIS. JRNL REF J.MED.CHEM. V. 62 7976 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31365252 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00718 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 40425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2052 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.81 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2680 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2440 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2533 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.96820 REMARK 3 B22 (A**2) : -1.22580 REMARK 3 B33 (A**2) : -0.74240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.37300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.182 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.169 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.183 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.170 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.797 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.742 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3215 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4355 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1128 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 78 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 467 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3215 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 425 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3825 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.34 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.89 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 9.5438 -0.7765 3.8553 REMARK 3 T TENSOR REMARK 3 T11: -0.1779 T22: -0.1845 REMARK 3 T33: 0.0290 T12: 0.0016 REMARK 3 T13: 0.0096 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.9378 L22: 1.7374 REMARK 3 L33: 0.1752 L12: -0.4043 REMARK 3 L13: 0.0281 L23: 0.3008 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.0282 S13: -0.1500 REMARK 3 S21: -0.0410 S22: -0.0206 S23: 0.0378 REMARK 3 S31: -0.0577 S32: -0.0084 S33: 0.0181 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 11.7074 22.3433 9.5814 REMARK 3 T TENSOR REMARK 3 T11: -0.1785 T22: -0.1586 REMARK 3 T33: 0.0009 T12: -0.0113 REMARK 3 T13: 0.0251 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.6544 L22: 0.9698 REMARK 3 L33: -0.0010 L12: -0.0354 REMARK 3 L13: -0.0146 L23: -0.0562 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.1470 S13: 0.1218 REMARK 3 S21: -0.0091 S22: 0.0158 S23: 0.0342 REMARK 3 S31: -0.0446 S32: 0.0281 S33: -0.0406 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RJ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292102024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40459 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.984 REMARK 200 RESOLUTION RANGE LOW (A) : 62.496 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : 0.15300 REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : 0.57000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2G76 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 8000, 0.1 M MES, 0.2 M REMARK 280 LITHIUM SULPHATE, PH 6.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.97950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 LEU A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 VAL A 8 REMARK 465 LEU A 9 REMARK 465 ILE A 10 REMARK 465 SER A 11 REMARK 465 ASP A 12 REMARK 465 SER A 13 REMARK 465 LEU A 14 REMARK 465 ASP A 15 REMARK 465 PRO A 16 REMARK 465 CYS A 17 REMARK 465 CYS A 18 REMARK 465 ARG A 19 REMARK 465 LYS A 20 REMARK 465 ILE A 21 REMARK 465 LEU A 22 REMARK 465 GLN A 23 REMARK 465 ASP A 24 REMARK 465 GLY A 25 REMARK 465 GLY A 26 REMARK 465 LEU A 27 REMARK 465 GLN A 28 REMARK 465 VAL A 29 REMARK 465 VAL A 30 REMARK 465 GLU A 31 REMARK 465 LYS A 32 REMARK 465 GLN A 33 REMARK 465 ASN A 34 REMARK 465 LEU A 35 REMARK 465 SER A 36 REMARK 465 LYS A 37 REMARK 465 GLU A 38 REMARK 465 GLU A 39 REMARK 465 LEU A 40 REMARK 465 ILE A 41 REMARK 465 ALA A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 GLN A 45 REMARK 465 ASP A 46 REMARK 465 CYS A 47 REMARK 465 GLU A 48 REMARK 465 GLY A 49 REMARK 465 LEU A 50 REMARK 465 ILE A 51 REMARK 465 VAL A 52 REMARK 465 ARG A 53 REMARK 465 SER A 54 REMARK 465 ALA A 55 REMARK 465 THR A 56 REMARK 465 LYS A 57 REMARK 465 VAL A 58 REMARK 465 THR A 59 REMARK 465 ALA A 60 REMARK 465 ASP A 61 REMARK 465 VAL A 62 REMARK 465 ILE A 63 REMARK 465 ASN A 64 REMARK 465 ALA A 65 REMARK 465 ALA A 66 REMARK 465 GLU A 67 REMARK 465 LYS A 68 REMARK 465 LEU A 69 REMARK 465 GLN A 70 REMARK 465 VAL A 71 REMARK 465 VAL A 72 REMARK 465 GLY A 73 REMARK 465 ARG A 74 REMARK 465 ALA A 75 REMARK 465 GLY A 76 REMARK 465 THR A 77 REMARK 465 GLY A 78 REMARK 465 VAL A 79 REMARK 465 ASP A 80 REMARK 465 ASN A 81 REMARK 465 VAL A 82 REMARK 465 ASP A 83 REMARK 465 LEU A 84 REMARK 465 GLU A 85 REMARK 465 ALA A 86 REMARK 465 ALA A 87 REMARK 465 THR A 88 REMARK 465 ARG A 89 REMARK 465 LYS A 90 REMARK 465 GLY A 91 REMARK 465 ILE A 92 REMARK 465 LEU A 93 REMARK 465 VAL A 94 REMARK 465 MET A 95 REMARK 465 ASN A 96 REMARK 465 THR A 97 REMARK 465 PRO A 98 REMARK 465 ASN A 101 REMARK 465 ASP A 304 REMARK 465 MET A 305 REMARK 465 VAL A 306 REMARK 465 LYS A 307 REMARK 465 GLY A 308 REMARK 465 LYS A 309 REMARK 465 SER A 310 REMARK 465 LEU A 311 REMARK 465 THR A 312 REMARK 465 GLY A 313 REMARK 465 VAL A 314 REMARK 465 SER B 1 REMARK 465 MET B 2 REMARK 465 ALA B 3 REMARK 465 ASN B 4 REMARK 465 LEU B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 VAL B 8 REMARK 465 LEU B 9 REMARK 465 ILE B 10 REMARK 465 SER B 11 REMARK 465 ASP B 12 REMARK 465 SER B 13 REMARK 465 LEU B 14 REMARK 465 ASP B 15 REMARK 465 PRO B 16 REMARK 465 CYS B 17 REMARK 465 CYS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 ILE B 21 REMARK 465 LEU B 22 REMARK 465 GLN B 23 REMARK 465 ASP B 24 REMARK 465 GLY B 25 REMARK 465 GLY B 26 REMARK 465 LEU B 27 REMARK 465 GLN B 28 REMARK 465 VAL B 29 REMARK 465 VAL B 30 REMARK 465 GLU B 31 REMARK 465 LYS B 32 REMARK 465 GLN B 33 REMARK 465 ASN B 34 REMARK 465 LEU B 35 REMARK 465 SER B 36 REMARK 465 LYS B 37 REMARK 465 GLU B 38 REMARK 465 GLU B 39 REMARK 465 LEU B 40 REMARK 465 ILE B 41 REMARK 465 ALA B 42 REMARK 465 GLU B 43 REMARK 465 LEU B 44 REMARK 465 GLN B 45 REMARK 465 ASP B 46 REMARK 465 CYS B 47 REMARK 465 GLU B 48 REMARK 465 GLY B 49 REMARK 465 LEU B 50 REMARK 465 ILE B 51 REMARK 465 VAL B 52 REMARK 465 ARG B 53 REMARK 465 SER B 54 REMARK 465 ALA B 55 REMARK 465 THR B 56 REMARK 465 LYS B 57 REMARK 465 VAL B 58 REMARK 465 THR B 59 REMARK 465 ALA B 60 REMARK 465 ASP B 61 REMARK 465 VAL B 62 REMARK 465 ILE B 63 REMARK 465 ASN B 64 REMARK 465 ALA B 65 REMARK 465 ALA B 66 REMARK 465 GLU B 67 REMARK 465 LYS B 68 REMARK 465 LEU B 69 REMARK 465 GLN B 70 REMARK 465 VAL B 71 REMARK 465 VAL B 72 REMARK 465 GLY B 73 REMARK 465 ARG B 74 REMARK 465 ALA B 75 REMARK 465 GLY B 76 REMARK 465 THR B 77 REMARK 465 GLY B 78 REMARK 465 VAL B 79 REMARK 465 ASP B 80 REMARK 465 ASN B 81 REMARK 465 VAL B 82 REMARK 465 ASP B 83 REMARK 465 LEU B 84 REMARK 465 GLU B 85 REMARK 465 ALA B 86 REMARK 465 ALA B 87 REMARK 465 THR B 88 REMARK 465 ARG B 89 REMARK 465 LYS B 90 REMARK 465 GLY B 91 REMARK 465 ILE B 92 REMARK 465 LEU B 93 REMARK 465 VAL B 94 REMARK 465 MET B 95 REMARK 465 ASN B 96 REMARK 465 LYS B 307 REMARK 465 GLY B 308 REMARK 465 LYS B 309 REMARK 465 SER B 310 REMARK 465 LEU B 311 REMARK 465 THR B 312 REMARK 465 GLY B 313 REMARK 465 VAL B 314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 234 -89.27 -102.05 REMARK 500 HIS A 282 71.34 49.89 REMARK 500 SER A 286 72.80 -63.74 REMARK 500 ASP B 174 116.58 -161.17 REMARK 500 ALA B 234 -91.88 -107.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 584 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 585 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 586 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A 587 DISTANCE = 9.51 ANGSTROMS REMARK 525 HOH A 588 DISTANCE = 10.22 ANGSTROMS REMARK 525 HOH A 589 DISTANCE = 10.60 ANGSTROMS REMARK 525 HOH A 590 DISTANCE = 12.02 ANGSTROMS REMARK 525 HOH A 591 DISTANCE = 12.14 ANGSTROMS REMARK 525 HOH A 592 DISTANCE = 13.19 ANGSTROMS REMARK 525 HOH A 593 DISTANCE = 14.17 ANGSTROMS REMARK 525 HOH A 594 DISTANCE = 15.83 ANGSTROMS REMARK 525 HOH A 595 DISTANCE = 19.41 ANGSTROMS REMARK 525 HOH A 596 DISTANCE = 19.62 ANGSTROMS REMARK 525 HOH A 597 DISTANCE = 20.49 ANGSTROMS REMARK 525 HOH A 598 DISTANCE = 21.93 ANGSTROMS REMARK 525 HOH B 571 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B 572 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B 573 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 574 DISTANCE = 8.19 ANGSTROMS REMARK 525 HOH B 575 DISTANCE = 8.50 ANGSTROMS REMARK 525 HOH B 576 DISTANCE = 9.73 ANGSTROMS REMARK 525 HOH B 577 DISTANCE = 9.74 ANGSTROMS REMARK 525 HOH B 578 DISTANCE = 10.14 ANGSTROMS REMARK 525 HOH B 579 DISTANCE = 10.44 ANGSTROMS REMARK 525 HOH B 580 DISTANCE = 13.67 ANGSTROMS REMARK 525 HOH B 581 DISTANCE = 16.09 ANGSTROMS REMARK 525 HOH B 582 DISTANCE = 17.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K5K A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K5K B 401 DBREF 6RJ6 A 3 314 UNP O43175 SERA_HUMAN 4 315 DBREF 6RJ6 B 3 314 UNP O43175 SERA_HUMAN 4 315 SEQADV 6RJ6 SER A 1 UNP O43175 EXPRESSION TAG SEQADV 6RJ6 MET A 2 UNP O43175 EXPRESSION TAG SEQADV 6RJ6 SER B 1 UNP O43175 EXPRESSION TAG SEQADV 6RJ6 MET B 2 UNP O43175 EXPRESSION TAG SEQRES 1 A 314 SER MET ALA ASN LEU ARG LYS VAL LEU ILE SER ASP SER SEQRES 2 A 314 LEU ASP PRO CYS CYS ARG LYS ILE LEU GLN ASP GLY GLY SEQRES 3 A 314 LEU GLN VAL VAL GLU LYS GLN ASN LEU SER LYS GLU GLU SEQRES 4 A 314 LEU ILE ALA GLU LEU GLN ASP CYS GLU GLY LEU ILE VAL SEQRES 5 A 314 ARG SER ALA THR LYS VAL THR ALA ASP VAL ILE ASN ALA SEQRES 6 A 314 ALA GLU LYS LEU GLN VAL VAL GLY ARG ALA GLY THR GLY SEQRES 7 A 314 VAL ASP ASN VAL ASP LEU GLU ALA ALA THR ARG LYS GLY SEQRES 8 A 314 ILE LEU VAL MET ASN THR PRO ASN GLY ASN SER LEU SER SEQRES 9 A 314 ALA ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA SEQRES 10 A 314 ARG GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY SEQRES 11 A 314 LYS TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN SEQRES 12 A 314 GLY LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY SEQRES 13 A 314 ARG GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS SEQRES 14 A 314 THR ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER SEQRES 15 A 314 ALA SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE SEQRES 16 A 314 TRP PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU SEQRES 17 A 314 LEU PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE SEQRES 18 A 314 ALA GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA SEQRES 19 A 314 ARG GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA SEQRES 20 A 314 LEU GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL SEQRES 21 A 314 PHE THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP SEQRES 22 A 314 HIS GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER SEQRES 23 A 314 THR LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA SEQRES 24 A 314 VAL GLN PHE VAL ASP MET VAL LYS GLY LYS SER LEU THR SEQRES 25 A 314 GLY VAL SEQRES 1 B 314 SER MET ALA ASN LEU ARG LYS VAL LEU ILE SER ASP SER SEQRES 2 B 314 LEU ASP PRO CYS CYS ARG LYS ILE LEU GLN ASP GLY GLY SEQRES 3 B 314 LEU GLN VAL VAL GLU LYS GLN ASN LEU SER LYS GLU GLU SEQRES 4 B 314 LEU ILE ALA GLU LEU GLN ASP CYS GLU GLY LEU ILE VAL SEQRES 5 B 314 ARG SER ALA THR LYS VAL THR ALA ASP VAL ILE ASN ALA SEQRES 6 B 314 ALA GLU LYS LEU GLN VAL VAL GLY ARG ALA GLY THR GLY SEQRES 7 B 314 VAL ASP ASN VAL ASP LEU GLU ALA ALA THR ARG LYS GLY SEQRES 8 B 314 ILE LEU VAL MET ASN THR PRO ASN GLY ASN SER LEU SER SEQRES 9 B 314 ALA ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA SEQRES 10 B 314 ARG GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY SEQRES 11 B 314 LYS TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN SEQRES 12 B 314 GLY LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY SEQRES 13 B 314 ARG GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS SEQRES 14 B 314 THR ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER SEQRES 15 B 314 ALA SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE SEQRES 16 B 314 TRP PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU SEQRES 17 B 314 LEU PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE SEQRES 18 B 314 ALA GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA SEQRES 19 B 314 ARG GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA SEQRES 20 B 314 LEU GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL SEQRES 21 B 314 PHE THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP SEQRES 22 B 314 HIS GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER SEQRES 23 B 314 THR LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA SEQRES 24 B 314 VAL GLN PHE VAL ASP MET VAL LYS GLY LYS SER LEU THR SEQRES 25 B 314 GLY VAL HET K5K A 401 32 HET K5K B 401 32 HETNAM K5K 2-[4-[(1~{S})-1-[[4,5-BIS(CHLORANYL)-1,6-DIMETHYL- HETNAM 2 K5K INDOL-2-YL]CARBONYLAMINO]-2-OXIDANYL- HETNAM 3 K5K ETHYL]PHENYL]SULFONYLETHANOIC ACID FORMUL 3 K5K 2(C21 H20 CL2 N2 O6 S) FORMUL 5 HOH *180(H2 O) HELIX 1 AA1 LEU A 103 GLN A 119 1 17 HELIX 2 AA2 GLN A 119 ASP A 129 1 11 HELIX 3 AA3 GLY A 153 SER A 165 1 13 HELIX 4 AA4 SER A 178 PHE A 185 1 8 HELIX 5 AA5 PRO A 191 TRP A 196 1 6 HELIX 6 AA6 PRO A 197 CYS A 199 5 3 HELIX 7 AA7 ASN A 217 CYS A 224 1 8 HELIX 8 AA8 ASP A 240 SER A 250 1 11 HELIX 9 AA9 ARG A 269 HIS A 274 1 6 HELIX 10 AB1 THR A 287 GLN A 301 1 15 HELIX 11 AB2 ASN B 101 GLN B 119 1 19 HELIX 12 AB3 GLN B 119 ASP B 129 1 11 HELIX 13 AB4 GLY B 153 SER B 165 1 13 HELIX 14 AB5 SER B 178 SER B 184 1 7 HELIX 15 AB6 PRO B 191 TRP B 196 1 6 HELIX 16 AB7 PRO B 197 CYS B 199 5 3 HELIX 17 AB8 ASN B 217 GLN B 223 1 7 HELIX 18 AB9 ASP B 240 SER B 250 1 11 HELIX 19 AC1 THR B 287 ASP B 304 1 18 SHEET 1 AA1 7 GLN A 188 GLN A 189 0 SHEET 2 AA1 7 LYS A 169 TYR A 173 1 N GLY A 172 O GLN A 188 SHEET 3 AA1 7 THR A 146 LEU A 150 1 N LEU A 147 O LYS A 169 SHEET 4 AA1 7 PHE A 201 VAL A 204 1 O THR A 203 N GLY A 148 SHEET 5 AA1 7 VAL A 228 ASN A 232 1 O VAL A 231 N ILE A 202 SHEET 6 AA1 7 CYS A 253 LEU A 258 1 O ALA A 257 N VAL A 230 SHEET 7 AA1 7 VAL A 277 SER A 279 1 O ILE A 278 N LEU A 258 SHEET 1 AA2 7 GLN B 188 GLN B 189 0 SHEET 2 AA2 7 LYS B 169 TYR B 173 1 N THR B 170 O GLN B 188 SHEET 3 AA2 7 THR B 146 LEU B 150 1 N LEU B 147 O LYS B 169 SHEET 4 AA2 7 PHE B 201 VAL B 204 1 O PHE B 201 N GLY B 148 SHEET 5 AA2 7 VAL B 228 ASN B 232 1 O VAL B 231 N ILE B 202 SHEET 6 AA2 7 CYS B 253 LEU B 258 1 O ALA B 257 N ASN B 232 SHEET 7 AA2 7 VAL B 277 SER B 279 1 O ILE B 278 N ALA B 256 CISPEP 1 GLU A 264 PRO A 265 0 1.85 CISPEP 2 GLU B 264 PRO B 265 0 1.28 SITE 1 AC1 15 GLY A 151 ARG A 154 ILE A 155 TYR A 173 SITE 2 AC1 15 ASP A 174 PRO A 175 ILE A 176 ILE A 177 SITE 3 AC1 15 HIS A 205 THR A 206 PRO A 207 THR A 212 SITE 4 AC1 15 LEU A 215 HOH A 504 HOH A 509 SITE 1 AC2 14 GLY B 151 ILE B 155 TYR B 173 ASP B 174 SITE 2 AC2 14 PRO B 175 ILE B 176 ILE B 177 HIS B 205 SITE 3 AC2 14 THR B 206 PRO B 207 SER B 211 THR B 212 SITE 4 AC2 14 LEU B 215 HOH B 528 CRYST1 43.137 111.959 62.505 90.00 90.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023182 0.000000 0.000401 0.00000 SCALE2 0.000000 0.008932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016001 0.00000