HEADER HYDROLASE 28-APR-19 6RJO TITLE COMPLEX STRUCTURE OF VIRULENCE FACTOR SGHA WITH ITS SUBSTRATE ANALOG TITLE 2 SALICIN CAVEAT 6RJO SER A 414 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS A6; SOURCE 3 ORGANISM_TAXID: 1453998; SOURCE 4 GENE: SGHA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET14B; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET14B-SGHA-E179S KEYWDS CHEMICAL SIGNALING, SUCROSE, AGROBACTERIUM, HOST-PATHOGEN KEYWDS 2 INTERACTION, GLUCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.Z.YE,C.WANG,C.Q.CHANG,L.H.ZHANG,Y.G.GAO REVDAT 5 24-JAN-24 6RJO 1 HETSYN REVDAT 4 29-JUL-20 6RJO 1 REMARK SITE REVDAT 3 06-NOV-19 6RJO 1 JRNL REVDAT 2 23-OCT-19 6RJO 1 JRNL REVDAT 1 09-OCT-19 6RJO 0 JRNL AUTH C.WANG,F.YE,C.CHANG,X.LIU,J.WANG,J.WANG,X.F.YAN,Q.FU,J.ZHOU, JRNL AUTH 2 S.CHEN,Y.G.GAO,L.H.ZHANG JRNL TITL AGROBACTERIA REPROGRAM VIRULENCE GENE EXPRESSION BY JRNL TITL 2 CONTROLLED RELEASE OF HOST-CONJUGATED SIGNALS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 22331 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31604827 JRNL DOI 10.1073/PNAS.1903695116 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 152164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 7649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8744 - 5.6025 0.89 4787 259 0.1392 0.1432 REMARK 3 2 5.6025 - 4.4479 0.91 4848 263 0.1271 0.1417 REMARK 3 3 4.4479 - 3.8859 0.88 4742 248 0.1224 0.1604 REMARK 3 4 3.8859 - 3.5307 0.91 4840 247 0.1395 0.1569 REMARK 3 5 3.5307 - 3.2777 0.91 4919 264 0.1552 0.1975 REMARK 3 6 3.2777 - 3.0845 0.92 4898 268 0.1631 0.2054 REMARK 3 7 3.0845 - 2.9300 0.90 4852 251 0.1687 0.1852 REMARK 3 8 2.9300 - 2.8025 0.90 4844 267 0.1687 0.2240 REMARK 3 9 2.8025 - 2.6946 0.92 4918 262 0.1670 0.2167 REMARK 3 10 2.6946 - 2.6016 0.92 4946 255 0.1674 0.2165 REMARK 3 11 2.6016 - 2.5203 0.92 4927 252 0.1675 0.2114 REMARK 3 12 2.5203 - 2.4483 0.92 4866 260 0.1697 0.2301 REMARK 3 13 2.4483 - 2.3838 0.92 4974 255 0.1731 0.2202 REMARK 3 14 2.3838 - 2.3257 0.91 4884 265 0.1798 0.2196 REMARK 3 15 2.3257 - 2.2728 0.88 4758 253 0.1837 0.2530 REMARK 3 16 2.2728 - 2.2244 0.89 4770 251 0.1939 0.2493 REMARK 3 17 2.2244 - 2.1799 0.90 4817 248 0.2002 0.2583 REMARK 3 18 2.1799 - 2.1388 0.90 4834 249 0.1986 0.2495 REMARK 3 19 2.1388 - 2.1006 0.90 4873 257 0.2006 0.2453 REMARK 3 20 2.1006 - 2.0650 0.90 4763 253 0.2163 0.2822 REMARK 3 21 2.0650 - 2.0317 0.91 4880 255 0.2270 0.2590 REMARK 3 22 2.0317 - 2.0004 0.90 4839 255 0.2409 0.3284 REMARK 3 23 2.0004 - 1.9710 0.90 4848 264 0.2424 0.2750 REMARK 3 24 1.9710 - 1.9432 0.90 4773 253 0.2377 0.2575 REMARK 3 25 1.9432 - 1.9170 0.88 4726 248 0.2552 0.2787 REMARK 3 26 1.9170 - 1.8921 0.87 4633 247 0.2608 0.2630 REMARK 3 27 1.8921 - 1.8684 0.87 4706 253 0.2661 0.2981 REMARK 3 28 1.8684 - 1.8459 0.88 4683 248 0.2737 0.2923 REMARK 3 29 1.8459 - 1.8244 0.89 4828 259 0.2854 0.3544 REMARK 3 30 1.8244 - 1.8039 0.85 4539 240 0.2966 0.3445 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7395 REMARK 3 ANGLE : 1.084 10059 REMARK 3 CHIRALITY : 0.074 1020 REMARK 3 PLANARITY : 0.005 1313 REMARK 3 DIHEDRAL : 15.899 2651 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292102051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86072 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.60000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6SJK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350 AND 0.4 M AMMONIUM REMARK 280 FORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.87350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.87450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.50400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.87450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.87350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.50400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 LEU A -1 REMARK 465 GLU A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 ARG A 5 REMARK 465 GLY A 460 REMARK 465 ASN A 461 REMARK 465 HIS A 462 REMARK 465 GLY A 463 REMARK 465 VAL A 464 REMARK 465 MET A 465 REMARK 465 LYS A 466 REMARK 465 GLY A 467 REMARK 465 MET B -22 REMARK 465 GLY B -21 REMARK 465 SER B -20 REMARK 465 SER B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 GLY B -10 REMARK 465 LEU B -9 REMARK 465 VAL B -8 REMARK 465 PRO B -7 REMARK 465 ARG B -6 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 LEU B -1 REMARK 465 GLU B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 5 REMARK 465 ALA B 6 REMARK 465 TYR B 7 REMARK 465 PRO B 8 REMARK 465 MET B 9 REMARK 465 THR B 10 REMARK 465 GLY B 460 REMARK 465 ASN B 461 REMARK 465 HIS B 462 REMARK 465 GLY B 463 REMARK 465 VAL B 464 REMARK 465 MET B 465 REMARK 465 LYS B 466 REMARK 465 GLY B 467 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 838 O HOH A 1180 3655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 413 CA - C - N ANGL. DEV. = -15.3 DEGREES REMARK 500 TRP A 413 O - C - N ANGL. DEV. = 10.9 DEGREES REMARK 500 SER A 414 C - N - CA ANGL. DEV. = 32.5 DEGREES REMARK 500 SER A 414 N - CA - C ANGL. DEV. = 21.9 DEGREES REMARK 500 TRP B 413 CA - C - N ANGL. DEV. = -20.2 DEGREES REMARK 500 TRP B 413 O - C - N ANGL. DEV. = 12.5 DEGREES REMARK 500 SER B 414 C - N - CA ANGL. DEV. = 32.5 DEGREES REMARK 500 SER B 414 N - CA - CB ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 67 -127.22 49.34 REMARK 500 TRP A 135 -6.27 90.17 REMARK 500 VAL A 184 -83.02 -93.79 REMARK 500 TYR A 307 -42.83 -137.87 REMARK 500 ASP A 383 54.56 -104.39 REMARK 500 SER A 414 119.32 18.98 REMARK 500 GLU A 420 57.00 -104.41 REMARK 500 TRP A 421 -127.10 51.62 REMARK 500 ALA B 67 -125.82 49.66 REMARK 500 TRP B 135 -7.78 91.00 REMARK 500 VAL B 184 -75.70 -96.42 REMARK 500 TYR B 307 -48.24 -131.97 REMARK 500 ASP B 383 51.40 -107.48 REMARK 500 SER B 414 118.52 104.53 REMARK 500 GLU B 420 57.79 -106.59 REMARK 500 TRP B 421 -127.26 53.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 413 SER A 414 -118.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1272 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A1273 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A1274 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A1275 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A1276 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH B1036 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B1037 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B1038 DISTANCE = 6.51 ANGSTROMS DBREF1 6RJO A 1 467 UNP A0A2I4PGZ0_RHIRD DBREF2 6RJO A A0A2I4PGZ0 1 467 DBREF1 6RJO B 1 467 UNP A0A2I4PGZ0_RHIRD DBREF2 6RJO B A0A2I4PGZ0 1 467 SEQADV 6RJO MET A -22 UNP A0A2I4PGZ INITIATING METHIONINE SEQADV 6RJO GLY A -21 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER A -20 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER A -19 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS A -18 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS A -17 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS A -16 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS A -15 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS A -14 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS A -13 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER A -12 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER A -11 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO GLY A -10 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO LEU A -9 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO VAL A -8 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO PRO A -7 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO ARG A -6 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO GLY A -5 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER A -4 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS A -3 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO MET A -2 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO LEU A -1 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO GLU A 0 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER A 179 UNP A0A2I4PGZ GLU 179 ENGINEERED MUTATION SEQADV 6RJO MET B -22 UNP A0A2I4PGZ INITIATING METHIONINE SEQADV 6RJO GLY B -21 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER B -20 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER B -19 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS B -18 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS B -17 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS B -16 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS B -15 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS B -14 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS B -13 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER B -12 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER B -11 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO GLY B -10 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO LEU B -9 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO VAL B -8 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO PRO B -7 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO ARG B -6 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO GLY B -5 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER B -4 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO HIS B -3 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO MET B -2 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO LEU B -1 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO GLU B 0 UNP A0A2I4PGZ EXPRESSION TAG SEQADV 6RJO SER B 179 UNP A0A2I4PGZ GLU 179 ENGINEERED MUTATION SEQRES 1 A 490 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 490 LEU VAL PRO ARG GLY SER HIS MET LEU GLU MET ASP ASP SEQRES 3 A 490 GLU ARG ALA TYR PRO MET THR ASP HIS LYS ALA LEU ALA SEQRES 4 A 490 ALA ARG PHE PRO GLY ASP PHE LEU PHE GLY VAL ALA THR SEQRES 5 A 490 ALA SER PHE GLN ILE GLU GLY ALA THR LYS VAL ASP GLY SEQRES 6 A 490 ARG LYS PRO SER ILE TRP ASP ALA PHE CYS ASN MET PRO SEQRES 7 A 490 GLY HIS VAL PHE GLY ARG HIS ASN GLY ASP VAL ALA CYS SEQRES 8 A 490 ASP HIS TYR ASN ARG TRP GLU ASP ASP LEU ASP LEU ILE SEQRES 9 A 490 LYS GLU MET GLY VAL GLU ALA TYR ARG PHE SER ILE ALA SEQRES 10 A 490 TRP PRO ARG ILE ILE PRO ASP GLY PHE GLY PRO ILE ASN SEQRES 11 A 490 GLU LYS GLY LEU ASP PHE TYR ASP ARG LEU VAL ASP GLY SEQRES 12 A 490 CYS LYS ALA ARG GLY ILE LYS THR TYR ALA THR LEU TYR SEQRES 13 A 490 HIS TRP ASP LEU PRO LEU THR LEU MET GLY ASP GLY GLY SEQRES 14 A 490 TRP ALA SER ARG SER THR ALA HIS ALA PHE GLN ARG TYR SEQRES 15 A 490 ALA LYS THR VAL MET ALA ARG LEU GLY ASP ARG LEU ASP SEQRES 16 A 490 ALA VAL ALA THR PHE ASN SER PRO TRP CYS ALA VAL TRP SEQRES 17 A 490 LEU SER HIS LEU TYR GLY ILE HIS ALA PRO GLY GLU ARG SEQRES 18 A 490 ASN MET GLU ALA ALA LEU ALA ALA MET HIS HIS ILE ASN SEQRES 19 A 490 LEU ALA HIS GLY PHE GLY VAL GLU ALA SER ARG HIS VAL SEQRES 20 A 490 ALA PRO LYS VAL PRO VAL GLY LEU VAL LEU ASN ALA HIS SEQRES 21 A 490 SER VAL ILE PRO ALA SER ASN SER ASP ALA ASP MET LYS SEQRES 22 A 490 ALA ALA GLU ARG ALA PHE GLN PHE HIS ASN GLY ALA PHE SEQRES 23 A 490 PHE ASP PRO VAL PHE LYS GLY GLU TYR PRO ALA GLU MET SEQRES 24 A 490 ILE GLU ALA LEU GLY SER ARG MET PRO VAL VAL GLU ALA SEQRES 25 A 490 GLU ASP LEU SER ILE ILE SER GLN LYS LEU ASP TRP TRP SEQRES 26 A 490 GLY LEU ASN TYR TYR THR PRO MET ARG VAL ALA ASP ASP SEQRES 27 A 490 ALA THR GLU GLY ALA GLU PHE PRO ALA THR LYS GLN ALA SEQRES 28 A 490 PRO ALA VAL SER ASP VAL LYS THR ASP ILE GLY TRP GLU SEQRES 29 A 490 VAL TYR ALA PRO ALA LEU HIS SER LEU VAL GLU THR LEU SEQRES 30 A 490 TYR GLU ARG TYR GLU LEU PRO ASP CYS TYR ILE THR GLU SEQRES 31 A 490 ASN GLY ALA CYS TYR ASN MET GLY VAL GLU ASN GLY GLU SEQRES 32 A 490 VAL ASP ASP GLN PRO ARG LEU ASP TYR TYR ALA GLU HIS SEQRES 33 A 490 LEU GLY ILE VAL ALA ASP LEU VAL LYS ASP GLY TYR PRO SEQRES 34 A 490 MET ARG GLY TYR PHE ALA TRP SER LEU MET ASP ASN PHE SEQRES 35 A 490 GLU TRP ALA GLU GLY TYR ARG MET ARG PHE GLY LEU VAL SEQRES 36 A 490 HIS VAL ASP TYR GLU THR GLN VAL ARG THR LEU LYS ASN SEQRES 37 A 490 SER GLY LYS TRP TYR SER ALA LEU ALA SER GLY PHE PRO SEQRES 38 A 490 LYS GLY ASN HIS GLY VAL MET LYS GLY SEQRES 1 B 490 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 490 LEU VAL PRO ARG GLY SER HIS MET LEU GLU MET ASP ASP SEQRES 3 B 490 GLU ARG ALA TYR PRO MET THR ASP HIS LYS ALA LEU ALA SEQRES 4 B 490 ALA ARG PHE PRO GLY ASP PHE LEU PHE GLY VAL ALA THR SEQRES 5 B 490 ALA SER PHE GLN ILE GLU GLY ALA THR LYS VAL ASP GLY SEQRES 6 B 490 ARG LYS PRO SER ILE TRP ASP ALA PHE CYS ASN MET PRO SEQRES 7 B 490 GLY HIS VAL PHE GLY ARG HIS ASN GLY ASP VAL ALA CYS SEQRES 8 B 490 ASP HIS TYR ASN ARG TRP GLU ASP ASP LEU ASP LEU ILE SEQRES 9 B 490 LYS GLU MET GLY VAL GLU ALA TYR ARG PHE SER ILE ALA SEQRES 10 B 490 TRP PRO ARG ILE ILE PRO ASP GLY PHE GLY PRO ILE ASN SEQRES 11 B 490 GLU LYS GLY LEU ASP PHE TYR ASP ARG LEU VAL ASP GLY SEQRES 12 B 490 CYS LYS ALA ARG GLY ILE LYS THR TYR ALA THR LEU TYR SEQRES 13 B 490 HIS TRP ASP LEU PRO LEU THR LEU MET GLY ASP GLY GLY SEQRES 14 B 490 TRP ALA SER ARG SER THR ALA HIS ALA PHE GLN ARG TYR SEQRES 15 B 490 ALA LYS THR VAL MET ALA ARG LEU GLY ASP ARG LEU ASP SEQRES 16 B 490 ALA VAL ALA THR PHE ASN SER PRO TRP CYS ALA VAL TRP SEQRES 17 B 490 LEU SER HIS LEU TYR GLY ILE HIS ALA PRO GLY GLU ARG SEQRES 18 B 490 ASN MET GLU ALA ALA LEU ALA ALA MET HIS HIS ILE ASN SEQRES 19 B 490 LEU ALA HIS GLY PHE GLY VAL GLU ALA SER ARG HIS VAL SEQRES 20 B 490 ALA PRO LYS VAL PRO VAL GLY LEU VAL LEU ASN ALA HIS SEQRES 21 B 490 SER VAL ILE PRO ALA SER ASN SER ASP ALA ASP MET LYS SEQRES 22 B 490 ALA ALA GLU ARG ALA PHE GLN PHE HIS ASN GLY ALA PHE SEQRES 23 B 490 PHE ASP PRO VAL PHE LYS GLY GLU TYR PRO ALA GLU MET SEQRES 24 B 490 ILE GLU ALA LEU GLY SER ARG MET PRO VAL VAL GLU ALA SEQRES 25 B 490 GLU ASP LEU SER ILE ILE SER GLN LYS LEU ASP TRP TRP SEQRES 26 B 490 GLY LEU ASN TYR TYR THR PRO MET ARG VAL ALA ASP ASP SEQRES 27 B 490 ALA THR GLU GLY ALA GLU PHE PRO ALA THR LYS GLN ALA SEQRES 28 B 490 PRO ALA VAL SER ASP VAL LYS THR ASP ILE GLY TRP GLU SEQRES 29 B 490 VAL TYR ALA PRO ALA LEU HIS SER LEU VAL GLU THR LEU SEQRES 30 B 490 TYR GLU ARG TYR GLU LEU PRO ASP CYS TYR ILE THR GLU SEQRES 31 B 490 ASN GLY ALA CYS TYR ASN MET GLY VAL GLU ASN GLY GLU SEQRES 32 B 490 VAL ASP ASP GLN PRO ARG LEU ASP TYR TYR ALA GLU HIS SEQRES 33 B 490 LEU GLY ILE VAL ALA ASP LEU VAL LYS ASP GLY TYR PRO SEQRES 34 B 490 MET ARG GLY TYR PHE ALA TRP SER LEU MET ASP ASN PHE SEQRES 35 B 490 GLU TRP ALA GLU GLY TYR ARG MET ARG PHE GLY LEU VAL SEQRES 36 B 490 HIS VAL ASP TYR GLU THR GLN VAL ARG THR LEU LYS ASN SEQRES 37 B 490 SER GLY LYS TRP TYR SER ALA LEU ALA SER GLY PHE PRO SEQRES 38 B 490 LYS GLY ASN HIS GLY VAL MET LYS GLY HET SA0 A 501 20 HET SA0 B 501 20 HETNAM SA0 2-(HYDROXYMETHYL)PHENYL BETA-D-GLUCOPYRANOSIDE HETSYN SA0 SALICIN; 2-(HYDROXYMETHYL)PHENYL BETA-D-GLUCOSIDE; 2- HETSYN 2 SA0 (HYDROXYMETHYL)PHENYL D-GLUCOSIDE; 2-(HYDROXYMETHYL) HETSYN 3 SA0 PHENYL GLUCOSIDE FORMUL 3 SA0 2(C13 H18 O7) FORMUL 5 HOH *914(H2 O) HELIX 1 AA1 THR A 10 ALA A 17 1 8 HELIX 2 AA2 ALA A 30 GLU A 35 1 6 HELIX 3 AA3 SER A 46 MET A 54 1 9 HELIX 4 AA4 VAL A 58 HIS A 62 5 5 HELIX 5 AA5 ASP A 69 GLY A 85 1 17 HELIX 6 AA6 ALA A 94 ILE A 99 1 6 HELIX 7 AA7 ASN A 107 ARG A 124 1 18 HELIX 8 AA8 PRO A 138 SER A 149 5 12 HELIX 9 AA9 ARG A 150 GLY A 168 1 19 HELIX 10 AB1 SER A 179 LEU A 189 1 11 HELIX 11 AB2 ASN A 199 ALA A 225 1 27 HELIX 12 AB3 SER A 245 ASN A 260 1 16 HELIX 13 AB4 ASN A 260 GLY A 270 1 11 HELIX 14 AB5 PRO A 273 GLY A 281 1 9 HELIX 15 AB6 SER A 282 MET A 284 5 3 HELIX 16 AB7 GLU A 290 SER A 296 1 7 HELIX 17 AB8 ALA A 344 TYR A 358 1 15 HELIX 18 AB9 ASP A 383 ASP A 403 1 21 HELIX 19 AC1 GLU A 420 MET A 427 5 8 HELIX 20 AC2 LYS A 444 SER A 455 1 12 HELIX 21 AC3 HIS B 12 ALA B 17 1 6 HELIX 22 AC4 ALA B 30 GLU B 35 1 6 HELIX 23 AC5 SER B 46 MET B 54 1 9 HELIX 24 AC6 VAL B 58 HIS B 62 5 5 HELIX 25 AC7 ASP B 69 GLY B 85 1 17 HELIX 26 AC8 ALA B 94 ILE B 99 1 6 HELIX 27 AC9 ASN B 107 GLY B 125 1 19 HELIX 28 AD1 PRO B 138 ALA B 148 5 11 HELIX 29 AD2 SER B 149 GLY B 168 1 20 HELIX 30 AD3 SER B 179 LEU B 189 1 11 HELIX 31 AD4 ASN B 199 ALA B 225 1 27 HELIX 32 AD5 SER B 245 ASN B 260 1 16 HELIX 33 AD6 ASN B 260 GLY B 270 1 11 HELIX 34 AD7 PRO B 273 GLY B 281 1 9 HELIX 35 AD8 SER B 282 MET B 284 5 3 HELIX 36 AD9 GLU B 290 SER B 296 1 7 HELIX 37 AE1 ALA B 344 TYR B 358 1 15 HELIX 38 AE2 ASP B 383 ASP B 403 1 21 HELIX 39 AE3 GLU B 420 MET B 427 5 8 HELIX 40 AE4 LYS B 444 SER B 455 1 12 SHEET 1 AA1 9 LEU A 24 ALA A 28 0 SHEET 2 AA1 9 ALA A 88 SER A 92 1 O ARG A 90 N VAL A 27 SHEET 3 AA1 9 LYS A 127 TYR A 133 1 O LYS A 127 N TYR A 89 SHEET 4 AA1 9 ALA A 173 ASN A 178 1 O ALA A 175 N ALA A 130 SHEET 5 AA1 9 VAL A 230 LEU A 234 1 O VAL A 233 N PHE A 177 SHEET 6 AA1 9 TRP A 301 ASN A 305 1 O GLY A 303 N LEU A 234 SHEET 7 AA1 9 ASP A 362 ASN A 368 1 O TYR A 364 N LEU A 304 SHEET 8 AA1 9 MET A 407 TRP A 413 1 O ARG A 408 N CYS A 363 SHEET 9 AA1 9 LEU A 24 ALA A 28 1 N GLY A 26 O TYR A 410 SHEET 1 AA2 3 VAL A 239 PRO A 241 0 SHEET 2 AA2 3 MET A 310 ASP A 314 1 O VAL A 312 N ILE A 240 SHEET 3 AA2 3 THR A 325 GLN A 327 -1 O LYS A 326 N ALA A 313 SHEET 1 AA3 2 VAL A 432 VAL A 434 0 SHEET 2 AA3 2 ARG A 441 LEU A 443 -1 O THR A 442 N HIS A 433 SHEET 1 AA4 9 LEU B 24 ALA B 28 0 SHEET 2 AA4 9 ALA B 88 SER B 92 1 O ARG B 90 N VAL B 27 SHEET 3 AA4 9 LYS B 127 TYR B 133 1 O LYS B 127 N TYR B 89 SHEET 4 AA4 9 ALA B 173 ASN B 178 1 O ALA B 175 N LEU B 132 SHEET 5 AA4 9 VAL B 230 LEU B 234 1 O GLY B 231 N VAL B 174 SHEET 6 AA4 9 TRP B 301 ASN B 305 1 O GLY B 303 N LEU B 234 SHEET 7 AA4 9 ASP B 362 GLU B 367 1 O TYR B 364 N LEU B 304 SHEET 8 AA4 9 MET B 407 TRP B 413 1 O PHE B 411 N ILE B 365 SHEET 9 AA4 9 LEU B 24 ALA B 28 1 N LEU B 24 O TYR B 410 SHEET 1 AA5 3 VAL B 239 PRO B 241 0 SHEET 2 AA5 3 MET B 310 ASP B 314 1 O MET B 310 N ILE B 240 SHEET 3 AA5 3 THR B 325 GLN B 327 -1 O LYS B 326 N ALA B 313 SHEET 1 AA6 2 VAL B 432 VAL B 434 0 SHEET 2 AA6 2 ARG B 441 LEU B 443 -1 O THR B 442 N HIS B 433 CISPEP 1 ALA A 194 PRO A 195 0 10.80 CISPEP 2 PHE A 322 PRO A 323 0 10.30 CISPEP 3 PHE A 457 PRO A 458 0 -3.33 CISPEP 4 ALA B 194 PRO B 195 0 8.65 CISPEP 5 PHE B 322 PRO B 323 0 9.41 CISPEP 6 PHE B 457 PRO B 458 0 -0.26 CRYST1 63.747 81.008 183.749 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005442 0.00000