HEADER PEPTIDE BINDING PROTEIN 30-APR-19 6RK4 TITLE LYSOSTAPHIN SH3B P4-G5 COMPLEX, SYNCHROTRON DATASET COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOSTAPHIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCYL-GLYCINE ENDOPEPTIDASE; COMPND 5 EC: 3.4.24.75; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS SIMULANS; SOURCE 3 ORGANISM_TAXID: 1286; SOURCE 4 GENE: LSS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEPTIDOGLYCAN HYDROLASE, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.WALTERS-MORGAN,A.L.LOVERING REVDAT 4 24-JAN-24 6RK4 1 REMARK REVDAT 3 25-DEC-19 6RK4 1 JRNL REVDAT 2 20-NOV-19 6RK4 1 JRNL REVDAT 1 16-OCT-19 6RK4 0 JRNL AUTH L.S.GONZALEZ-DELGADO,H.WALTERS-MORGAN,B.SALAMAGA, JRNL AUTH 2 A.J.ROBERTSON,A.M.HOUNSLOW,E.JAGIELSKA,I.SABALA, JRNL AUTH 3 M.P.WILLIAMSON,A.L.LOVERING,S.MESNAGE JRNL TITL TWO-SITE RECOGNITION OF STAPHYLOCOCCUS AUREUS PEPTIDOGLYCAN JRNL TITL 2 BY LYSOSTAPHIN SH3B. JRNL REF NAT.CHEM.BIOL. V. 16 24 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 31686030 JRNL DOI 10.1038/S41589-019-0393-4 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0241 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 24750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1295 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1775 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 737 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.31000 REMARK 3 B22 (A**2) : 3.31000 REMARK 3 B33 (A**2) : -6.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.164 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 811 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 712 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1096 ; 1.490 ; 1.730 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1646 ; 1.264 ; 1.597 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 94 ; 7.070 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 35 ;30.220 ;21.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 126 ;12.140 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 5.880 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 101 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 892 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 176 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1520 ; 2.757 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6RK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292102016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26123 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 37.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 24.30 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 24.70 REMARK 200 R MERGE FOR SHELL (I) : 3.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LEO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS PH 5.5 25% W/V PEG3350 REMARK 280 200MM AMMONIUM SULPHATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.17500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.54000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.58750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.54000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.76250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.54000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.54000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.58750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.54000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.54000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.76250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.17500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 6 REMARK 465 ASN A 7 REMARK 465 TYR A 8 REMARK 465 TYR A 9 REMARK 465 THR A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 ILE A 15 REMARK 465 GLY A 16 REMARK 465 LEU A 17 REMARK 465 SER A 18 REMARK 465 THR A 19 REMARK 465 PHE A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 ILE A 25 REMARK 465 VAL A 26 REMARK 465 TYR A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 29 REMARK 465 ILE A 30 REMARK 465 GLN A 31 REMARK 465 ASN A 32 REMARK 465 GLU A 33 REMARK 465 THR A 34 REMARK 465 HIS A 35 REMARK 465 ALA A 36 REMARK 465 SER A 37 REMARK 465 GLU A 38 REMARK 465 LYS A 39 REMARK 465 SER A 40 REMARK 465 ASN A 41 REMARK 465 MET A 42 REMARK 465 ASP A 43 REMARK 465 VAL A 44 REMARK 465 SER A 45 REMARK 465 LYS A 46 REMARK 465 LYS A 47 REMARK 465 VAL A 48 REMARK 465 ALA A 49 REMARK 465 GLU A 50 REMARK 465 VAL A 51 REMARK 465 GLU A 52 REMARK 465 THR A 53 REMARK 465 SER A 54 REMARK 465 LYS A 55 REMARK 465 ALA A 56 REMARK 465 PRO A 57 REMARK 465 VAL A 58 REMARK 465 GLU A 59 REMARK 465 ASN A 60 REMARK 465 THR A 61 REMARK 465 ALA A 62 REMARK 465 GLU A 63 REMARK 465 VAL A 64 REMARK 465 GLU A 65 REMARK 465 THR A 66 REMARK 465 SER A 67 REMARK 465 LYS A 68 REMARK 465 ALA A 69 REMARK 465 PRO A 70 REMARK 465 VAL A 71 REMARK 465 GLU A 72 REMARK 465 ASN A 73 REMARK 465 THR A 74 REMARK 465 ALA A 75 REMARK 465 GLU A 76 REMARK 465 VAL A 77 REMARK 465 GLU A 78 REMARK 465 THR A 79 REMARK 465 SER A 80 REMARK 465 LYS A 81 REMARK 465 ALA A 82 REMARK 465 PRO A 83 REMARK 465 VAL A 84 REMARK 465 GLU A 85 REMARK 465 ASN A 86 REMARK 465 THR A 87 REMARK 465 ALA A 88 REMARK 465 GLU A 89 REMARK 465 VAL A 90 REMARK 465 GLU A 91 REMARK 465 THR A 92 REMARK 465 SER A 93 REMARK 465 LYS A 94 REMARK 465 ALA A 95 REMARK 465 PRO A 96 REMARK 465 VAL A 97 REMARK 465 GLU A 98 REMARK 465 ASN A 99 REMARK 465 THR A 100 REMARK 465 ALA A 101 REMARK 465 GLU A 102 REMARK 465 VAL A 103 REMARK 465 GLU A 104 REMARK 465 THR A 105 REMARK 465 SER A 106 REMARK 465 LYS A 107 REMARK 465 ALA A 108 REMARK 465 PRO A 109 REMARK 465 VAL A 110 REMARK 465 GLU A 111 REMARK 465 ASN A 112 REMARK 465 THR A 113 REMARK 465 ALA A 114 REMARK 465 GLU A 115 REMARK 465 VAL A 116 REMARK 465 GLU A 117 REMARK 465 THR A 118 REMARK 465 SER A 119 REMARK 465 LYS A 120 REMARK 465 ALA A 121 REMARK 465 PRO A 122 REMARK 465 VAL A 123 REMARK 465 GLU A 124 REMARK 465 ASN A 125 REMARK 465 THR A 126 REMARK 465 ALA A 127 REMARK 465 GLU A 128 REMARK 465 VAL A 129 REMARK 465 GLU A 130 REMARK 465 THR A 131 REMARK 465 SER A 132 REMARK 465 LYS A 133 REMARK 465 ALA A 134 REMARK 465 PRO A 135 REMARK 465 VAL A 136 REMARK 465 GLU A 137 REMARK 465 ASN A 138 REMARK 465 THR A 139 REMARK 465 ALA A 140 REMARK 465 GLU A 141 REMARK 465 VAL A 142 REMARK 465 GLU A 143 REMARK 465 THR A 144 REMARK 465 SER A 145 REMARK 465 LYS A 146 REMARK 465 ALA A 147 REMARK 465 PRO A 148 REMARK 465 VAL A 149 REMARK 465 GLU A 150 REMARK 465 ASN A 151 REMARK 465 THR A 152 REMARK 465 ALA A 153 REMARK 465 GLU A 154 REMARK 465 VAL A 155 REMARK 465 GLU A 156 REMARK 465 THR A 157 REMARK 465 SER A 158 REMARK 465 LYS A 159 REMARK 465 ALA A 160 REMARK 465 PRO A 161 REMARK 465 VAL A 162 REMARK 465 GLU A 163 REMARK 465 ASN A 164 REMARK 465 THR A 165 REMARK 465 ALA A 166 REMARK 465 GLU A 167 REMARK 465 VAL A 168 REMARK 465 GLU A 169 REMARK 465 THR A 170 REMARK 465 SER A 171 REMARK 465 LYS A 172 REMARK 465 ALA A 173 REMARK 465 PRO A 174 REMARK 465 VAL A 175 REMARK 465 GLU A 176 REMARK 465 ASN A 177 REMARK 465 THR A 178 REMARK 465 ALA A 179 REMARK 465 GLU A 180 REMARK 465 VAL A 181 REMARK 465 GLU A 182 REMARK 465 THR A 183 REMARK 465 SER A 184 REMARK 465 LYS A 185 REMARK 465 ALA A 186 REMARK 465 PRO A 187 REMARK 465 VAL A 188 REMARK 465 GLU A 189 REMARK 465 ASN A 190 REMARK 465 THR A 191 REMARK 465 ALA A 192 REMARK 465 GLU A 193 REMARK 465 VAL A 194 REMARK 465 GLU A 195 REMARK 465 THR A 196 REMARK 465 SER A 197 REMARK 465 LYS A 198 REMARK 465 ALA A 199 REMARK 465 PRO A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 ASN A 203 REMARK 465 THR A 204 REMARK 465 ALA A 205 REMARK 465 GLU A 206 REMARK 465 VAL A 207 REMARK 465 GLU A 208 REMARK 465 THR A 209 REMARK 465 SER A 210 REMARK 465 LYS A 211 REMARK 465 ALA A 212 REMARK 465 PRO A 213 REMARK 465 VAL A 214 REMARK 465 GLU A 215 REMARK 465 ASN A 216 REMARK 465 THR A 217 REMARK 465 ALA A 218 REMARK 465 GLU A 219 REMARK 465 VAL A 220 REMARK 465 GLU A 221 REMARK 465 THR A 222 REMARK 465 SER A 223 REMARK 465 LYS A 224 REMARK 465 ALA A 225 REMARK 465 PRO A 226 REMARK 465 VAL A 227 REMARK 465 GLU A 228 REMARK 465 ASN A 229 REMARK 465 THR A 230 REMARK 465 ALA A 231 REMARK 465 GLU A 232 REMARK 465 VAL A 233 REMARK 465 GLU A 234 REMARK 465 THR A 235 REMARK 465 SER A 236 REMARK 465 LYS A 237 REMARK 465 ALA A 238 REMARK 465 LEU A 239 REMARK 465 VAL A 240 REMARK 465 GLN A 241 REMARK 465 ASN A 242 REMARK 465 ARG A 243 REMARK 465 THR A 244 REMARK 465 ALA A 245 REMARK 465 LEU A 246 REMARK 465 ARG A 247 REMARK 465 ALA A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 465 HIS A 251 REMARK 465 GLU A 252 REMARK 465 HIS A 253 REMARK 465 SER A 254 REMARK 465 ALA A 255 REMARK 465 GLN A 256 REMARK 465 TRP A 257 REMARK 465 LEU A 258 REMARK 465 ASN A 259 REMARK 465 ASN A 260 REMARK 465 TYR A 261 REMARK 465 LYS A 262 REMARK 465 LYS A 263 REMARK 465 GLY A 264 REMARK 465 TYR A 265 REMARK 465 GLY A 266 REMARK 465 TYR A 267 REMARK 465 GLY A 268 REMARK 465 PRO A 269 REMARK 465 TYR A 270 REMARK 465 PRO A 271 REMARK 465 LEU A 272 REMARK 465 GLY A 273 REMARK 465 ILE A 274 REMARK 465 ASN A 275 REMARK 465 GLY A 276 REMARK 465 GLY A 277 REMARK 465 MET A 278 REMARK 465 HIS A 279 REMARK 465 TYR A 280 REMARK 465 GLY A 281 REMARK 465 VAL A 282 REMARK 465 ASP A 283 REMARK 465 PHE A 284 REMARK 465 PHE A 285 REMARK 465 MET A 286 REMARK 465 ASN A 287 REMARK 465 ILE A 288 REMARK 465 GLY A 289 REMARK 465 THR A 290 REMARK 465 PRO A 291 REMARK 465 VAL A 292 REMARK 465 LYS A 293 REMARK 465 ALA A 294 REMARK 465 ILE A 295 REMARK 465 SER A 296 REMARK 465 SER A 297 REMARK 465 GLY A 298 REMARK 465 LYS A 299 REMARK 465 ILE A 300 REMARK 465 VAL A 301 REMARK 465 GLU A 302 REMARK 465 ALA A 303 REMARK 465 GLY A 304 REMARK 465 TRP A 305 REMARK 465 SER A 306 REMARK 465 ASN A 307 REMARK 465 TYR A 308 REMARK 465 GLY A 309 REMARK 465 GLY A 310 REMARK 465 GLY A 311 REMARK 465 ASN A 312 REMARK 465 GLN A 313 REMARK 465 ILE A 314 REMARK 465 GLY A 315 REMARK 465 LEU A 316 REMARK 465 ILE A 317 REMARK 465 GLU A 318 REMARK 465 ASN A 319 REMARK 465 ASP A 320 REMARK 465 GLY A 321 REMARK 465 VAL A 322 REMARK 465 HIS A 323 REMARK 465 ARG A 324 REMARK 465 GLN A 325 REMARK 465 TRP A 326 REMARK 465 TYR A 327 REMARK 465 MET A 328 REMARK 465 HIS A 329 REMARK 465 LEU A 330 REMARK 465 SER A 331 REMARK 465 LYS A 332 REMARK 465 TYR A 333 REMARK 465 ASN A 334 REMARK 465 VAL A 335 REMARK 465 LYS A 336 REMARK 465 VAL A 337 REMARK 465 GLY A 338 REMARK 465 ASP A 339 REMARK 465 TYR A 340 REMARK 465 VAL A 341 REMARK 465 LYS A 342 REMARK 465 ALA A 343 REMARK 465 GLY A 344 REMARK 465 GLN A 345 REMARK 465 ILE A 346 REMARK 465 ILE A 347 REMARK 465 GLY A 348 REMARK 465 TRP A 349 REMARK 465 SER A 350 REMARK 465 GLY A 351 REMARK 465 SER A 352 REMARK 465 THR A 353 REMARK 465 GLY A 354 REMARK 465 TYR A 355 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 ALA A 358 REMARK 465 PRO A 359 REMARK 465 HIS A 360 REMARK 465 LEU A 361 REMARK 465 HIS A 362 REMARK 465 PHE A 363 REMARK 465 GLN A 364 REMARK 465 ARG A 365 REMARK 465 MET A 366 REMARK 465 VAL A 367 REMARK 465 ASN A 368 REMARK 465 SER A 369 REMARK 465 PHE A 370 REMARK 465 SER A 371 REMARK 465 ASN A 372 REMARK 465 SER A 373 REMARK 465 THR A 374 REMARK 465 ALA A 375 REMARK 465 GLN A 376 REMARK 465 ASP A 377 REMARK 465 PRO A 378 REMARK 465 MET A 379 REMARK 465 PRO A 380 REMARK 465 PHE A 381 REMARK 465 LEU A 382 REMARK 465 LYS A 383 REMARK 465 SER A 384 REMARK 465 ALA A 385 REMARK 465 GLY A 386 REMARK 465 TYR A 387 REMARK 465 GLY A 388 REMARK 465 LYS A 389 REMARK 465 ALA A 390 REMARK 465 GLY A 391 REMARK 465 GLY A 392 REMARK 465 THR A 393 REMARK 465 VAL A 394 REMARK 465 THR A 395 REMARK 465 PRO A 396 REMARK 465 THR A 397 REMARK 465 PRO A 398 REMARK 465 ASN A 399 REMARK 465 THR A 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 414 118.28 -168.78 REMARK 500 THR A 429 -52.35 81.93 REMARK 500 ALA A 443 125.34 -37.35 REMARK 500 TRP A 489 39.27 -85.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 K5T A 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K5T A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 DBREF 6RK4 A 1 493 UNP P10547 LSTP_STASI 1 493 SEQRES 1 A 493 MET LYS LYS THR LYS ASN ASN TYR TYR THR ARG PRO LEU SEQRES 2 A 493 ALA ILE GLY LEU SER THR PHE ALA LEU ALA SER ILE VAL SEQRES 3 A 493 TYR GLY GLY ILE GLN ASN GLU THR HIS ALA SER GLU LYS SEQRES 4 A 493 SER ASN MET ASP VAL SER LYS LYS VAL ALA GLU VAL GLU SEQRES 5 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 6 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 7 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 8 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 9 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 10 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 11 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 12 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 13 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 14 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 15 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 16 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 17 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 18 A 493 THR SER LYS ALA PRO VAL GLU ASN THR ALA GLU VAL GLU SEQRES 19 A 493 THR SER LYS ALA LEU VAL GLN ASN ARG THR ALA LEU ARG SEQRES 20 A 493 ALA ALA THR HIS GLU HIS SER ALA GLN TRP LEU ASN ASN SEQRES 21 A 493 TYR LYS LYS GLY TYR GLY TYR GLY PRO TYR PRO LEU GLY SEQRES 22 A 493 ILE ASN GLY GLY MET HIS TYR GLY VAL ASP PHE PHE MET SEQRES 23 A 493 ASN ILE GLY THR PRO VAL LYS ALA ILE SER SER GLY LYS SEQRES 24 A 493 ILE VAL GLU ALA GLY TRP SER ASN TYR GLY GLY GLY ASN SEQRES 25 A 493 GLN ILE GLY LEU ILE GLU ASN ASP GLY VAL HIS ARG GLN SEQRES 26 A 493 TRP TYR MET HIS LEU SER LYS TYR ASN VAL LYS VAL GLY SEQRES 27 A 493 ASP TYR VAL LYS ALA GLY GLN ILE ILE GLY TRP SER GLY SEQRES 28 A 493 SER THR GLY TYR SER THR ALA PRO HIS LEU HIS PHE GLN SEQRES 29 A 493 ARG MET VAL ASN SER PHE SER ASN SER THR ALA GLN ASP SEQRES 30 A 493 PRO MET PRO PHE LEU LYS SER ALA GLY TYR GLY LYS ALA SEQRES 31 A 493 GLY GLY THR VAL THR PRO THR PRO ASN THR GLY TRP LYS SEQRES 32 A 493 THR ASN LYS TYR GLY THR LEU TYR LYS SER GLU SER ALA SEQRES 33 A 493 SER PHE THR PRO ASN THR ASP ILE ILE THR ARG THR THR SEQRES 34 A 493 GLY PRO PHE ARG SER MET PRO GLN SER GLY VAL LEU LYS SEQRES 35 A 493 ALA GLY GLN THR ILE HIS TYR ASP GLU VAL MET LYS GLN SEQRES 36 A 493 ASP GLY HIS VAL TRP VAL GLY TYR THR GLY ASN SER GLY SEQRES 37 A 493 GLN ARG ILE TYR LEU PRO VAL ARG THR TRP ASN LYS SER SEQRES 38 A 493 THR ASN THR LEU GLY VAL LEU TRP GLY THR ILE LYS HET K5T A 501 44 HET EDO A 502 4 HET EDO A 503 4 HETNAM K5T (2~{R})-2-[[(2~{S})-2-[[(4~{R})-5-AZANYL-4-[[(2~{S})-2- HETNAM 2 K5T AZANYLPROPANOYL]AMINO]-5-OXIDANYLIDENE- HETNAM 3 K5T PENTANOYL]AMINO]-6-[2-[2-[2-[2-(2- HETNAM 4 K5T AZANYLETHANOYLAMINO) HETNAM 5 K5T ETHANOYLAMINO]ETHANOYLAMINO]ETHANOYLAMINO]ETHANOYLAMIN HETNAM 6 K5T O]HEXANOYL]AMINO]PROPANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 K5T C27 H47 N11 O11 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *24(H2 O) SHEET 1 AA1 6 LYS A 403 THR A 404 0 SHEET 2 AA1 6 LEU A 410 PRO A 420 -1 O TYR A 411 N LYS A 403 SHEET 3 AA1 6 ILE A 447 GLN A 455 -1 O ILE A 447 N PHE A 418 SHEET 4 AA1 6 HIS A 458 THR A 464 -1 O TRP A 460 N MET A 453 SHEET 5 AA1 6 ARG A 470 ASN A 479 -1 O ILE A 471 N TYR A 463 SHEET 6 AA1 6 THR A 484 LEU A 485 -1 O THR A 484 N ASN A 479 SHEET 1 AA2 3 LYS A 403 THR A 404 0 SHEET 2 AA2 3 LEU A 410 PRO A 420 -1 O TYR A 411 N LYS A 403 SHEET 3 AA2 3 GLY A 490 ILE A 492 -1 O THR A 491 N THR A 419 SHEET 1 AA3 2 ILE A 424 ARG A 427 0 SHEET 2 AA3 2 GLN A 437 LEU A 441 -1 O LEU A 441 N ILE A 424 SITE 1 AC1 24 ASN A 405 LYS A 406 TYR A 407 THR A 409 SITE 2 AC1 24 TYR A 411 ASP A 423 ILE A 424 ILE A 425 SITE 3 AC1 24 ARG A 427 THR A 429 PRO A 431 PHE A 432 SITE 4 AC1 24 ARG A 433 MET A 435 GLU A 451 MET A 453 SITE 5 AC1 24 HIS A 458 TYR A 472 TRP A 489 EDO A 502 SITE 6 AC1 24 HOH A 601 HOH A 607 HOH A 612 HOH A 615 SITE 1 AC2 4 GLU A 451 ARG A 470 TYR A 472 K5T A 501 SITE 1 AC3 3 GLU A 414 ARG A 476 ILE A 492 CRYST1 47.080 47.080 122.350 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008173 0.00000