HEADER TRANSFERASE 30-APR-19 6RKT TITLE CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH N2-METHYL-1H,7H,8H-IMIDAZO[4, TITLE 2 5-G]QUINAZOLINE-2,6-DIAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS; SOURCE 3 ORGANISM_TAXID: 542; SOURCE 4 VARIANT: ATCC 31821 / ZM4 / CP4; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS KEYWDS TGT, TRNA, GUANINE EXCHANGE ENZYME, PROTEIN INTERFACE, TRANSFERASE, KEYWDS 2 TRANSGLYCOSYLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.HASSAAN,A.HEINE,G.KLEBE REVDAT 3 24-JAN-24 6RKT 1 REMARK REVDAT 2 16-DEC-20 6RKT 1 JRNL REVDAT 1 03-JUN-20 6RKT 0 JRNL AUTH E.HASSAAN,C.HOHN,F.R.EHRMANN,F.W.GOETZKE,L.MOVSISYAN, JRNL AUTH 2 T.HUFNER-WULSDORF,M.SEBASTIANI,A.HARTSCH,K.REUTER, JRNL AUTH 3 F.DIEDERICH,G.KLEBE JRNL TITL FRAGMENT SCREENING HIT DRAWS ATTENTION TO A NOVEL TRANSIENT JRNL TITL 2 POCKET ADJACENT TO THE RECOGNITION SITE OF THE JRNL TITL 3 TRNA-MODIFYING ENZYME TGT. JRNL REF J.MED.CHEM. V. 63 6802 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32515955 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00115 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 40307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9051 - 4.2056 0.98 2823 148 0.1521 0.1951 REMARK 3 2 4.2056 - 3.3387 0.99 2814 148 0.1462 0.1640 REMARK 3 3 3.3387 - 2.9168 0.95 2664 141 0.1685 0.1949 REMARK 3 4 2.9168 - 2.6502 0.98 2756 145 0.1668 0.2069 REMARK 3 5 2.6502 - 2.4603 0.98 2753 145 0.1788 0.1867 REMARK 3 6 2.4603 - 2.3152 0.99 2754 145 0.1656 0.2160 REMARK 3 7 2.3152 - 2.1993 0.99 2766 145 0.1761 0.2409 REMARK 3 8 2.1993 - 2.1036 0.99 2786 146 0.1812 0.2222 REMARK 3 9 2.1036 - 2.0226 1.00 2794 147 0.1863 0.2365 REMARK 3 10 2.0226 - 1.9528 1.00 2750 145 0.2034 0.2614 REMARK 3 11 1.9528 - 1.8918 1.00 2773 146 0.2301 0.2739 REMARK 3 12 1.8918 - 1.8377 1.00 2780 145 0.2458 0.2802 REMARK 3 13 1.8377 - 1.7893 0.98 2741 145 0.2709 0.3261 REMARK 3 14 1.7893 - 1.7456 0.84 2339 123 0.3162 0.3306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2895 REMARK 3 ANGLE : 0.997 3904 REMARK 3 CHIRALITY : 0.054 412 REMARK 3 PLANARITY : 0.007 532 REMARK 3 DIHEDRAL : 14.526 1744 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6237 0.3248 89.4741 REMARK 3 T TENSOR REMARK 3 T11: 0.3388 T22: 0.2296 REMARK 3 T33: 0.3049 T12: 0.0177 REMARK 3 T13: 0.0038 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.2184 L22: 0.0281 REMARK 3 L33: 1.2946 L12: -0.3997 REMARK 3 L13: -0.2707 L23: -0.0073 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: -0.0176 S13: -0.0045 REMARK 3 S21: 0.0835 S22: 0.0459 S23: -0.0082 REMARK 3 S31: -0.0557 S32: -0.0162 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7450 22.8336 99.7773 REMARK 3 T TENSOR REMARK 3 T11: 0.8021 T22: 0.4345 REMARK 3 T33: 0.5900 T12: 0.0692 REMARK 3 T13: -0.1432 T23: -0.1457 REMARK 3 L TENSOR REMARK 3 L11: 0.0420 L22: 0.0147 REMARK 3 L33: 0.0322 L12: 0.0057 REMARK 3 L13: -0.0246 L23: -0.0077 REMARK 3 S TENSOR REMARK 3 S11: -0.2264 S12: -0.3396 S13: 0.2240 REMARK 3 S21: 0.0161 S22: -0.1184 S23: -0.2187 REMARK 3 S31: 0.0895 S32: -0.3579 S33: -0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2078 9.2242 100.7827 REMARK 3 T TENSOR REMARK 3 T11: 0.4207 T22: 0.3539 REMARK 3 T33: 0.3054 T12: 0.0234 REMARK 3 T13: -0.0032 T23: -0.0570 REMARK 3 L TENSOR REMARK 3 L11: 0.1177 L22: 0.0062 REMARK 3 L33: 0.2059 L12: 0.0515 REMARK 3 L13: 0.1835 L23: 0.0436 REMARK 3 S TENSOR REMARK 3 S11: -0.0437 S12: -0.3425 S13: 0.1690 REMARK 3 S21: 0.1382 S22: 0.0630 S23: -0.0273 REMARK 3 S31: -0.2992 S32: -0.0654 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9178 9.6959 103.8439 REMARK 3 T TENSOR REMARK 3 T11: 0.3855 T22: 0.4173 REMARK 3 T33: 0.3244 T12: -0.0412 REMARK 3 T13: -0.0261 T23: -0.0908 REMARK 3 L TENSOR REMARK 3 L11: 0.5611 L22: 0.4170 REMARK 3 L33: 0.5666 L12: -0.4839 REMARK 3 L13: -0.1184 L23: 0.2577 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: -0.5296 S13: 0.1364 REMARK 3 S21: 0.1628 S22: 0.0881 S23: -0.1122 REMARK 3 S31: -0.1849 S32: 0.2435 S33: 0.0181 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5301 6.6230 89.3346 REMARK 3 T TENSOR REMARK 3 T11: 0.3196 T22: 0.3541 REMARK 3 T33: 0.3757 T12: -0.0344 REMARK 3 T13: -0.0003 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.6909 L22: 0.7375 REMARK 3 L33: 0.6560 L12: 0.0415 REMARK 3 L13: -0.5171 L23: 0.5026 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: -0.1651 S13: 0.2279 REMARK 3 S21: -0.0503 S22: 0.1105 S23: -0.1582 REMARK 3 S31: -0.1588 S32: 0.1520 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5369 3.1492 68.7075 REMARK 3 T TENSOR REMARK 3 T11: 0.3431 T22: 0.3278 REMARK 3 T33: 0.3086 T12: 0.0061 REMARK 3 T13: 0.0195 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.4720 L22: -0.0788 REMARK 3 L33: 0.9895 L12: -0.5090 REMARK 3 L13: 0.9201 L23: -0.4785 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.1965 S13: -0.0296 REMARK 3 S21: -0.0395 S22: -0.0237 S23: -0.0034 REMARK 3 S31: 0.0155 S32: 0.2092 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RKT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292101285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40353 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.746 REMARK 200 RESOLUTION RANGE LOW (A) : 44.738 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03500 REMARK 200 FOR THE DATA SET : 17.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 8000, 100MM MES, 1MM DTT, 10% REMARK 280 DMSO, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.81450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.29400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.81450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.29400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -8.29357 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 142.11020 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 683 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 112 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 HIS A 127 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 GLY A 130 REMARK 465 PRO A 160 REMARK 465 ARG A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 THR A 47 OG1 CG2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 107 OE1 NE2 REMARK 470 VAL A 108 CG1 CG2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 OE1 NE2 REMARK 470 VAL A 122 CG1 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 SER A 131 OG REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 THR A 159 OG1 CG2 REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 SER A 170 OG REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 GLU A 220 OE1 OE2 REMARK 470 LYS A 264 CE NZ REMARK 470 ASP A 266 CG OD1 OD2 REMARK 470 ASN A 301 ND2 REMARK 470 ARG A 306 NH1 NH2 REMARK 470 SER A 316 CB OG REMARK 470 LYS A 325 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 273 HH22 ARG A 378 1.57 REMARK 500 OE1 GLU A 81 O HOH A 501 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 115.09 -161.96 REMARK 500 ALA A 48 44.95 -99.27 REMARK 500 GLN A 203 -163.77 -120.46 REMARK 500 SER A 205 -134.80 55.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 101.4 REMARK 620 3 CYS A 323 SG 112.1 118.2 REMARK 620 4 HIS A 349 ND1 110.4 117.0 98.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K7H A 404 DBREF 6RKT A 10 384 UNP P28720 TGT_ZYMMO 10 384 SEQADV 6RKT LYS A 312 UNP P28720 THR 312 CONFLICT SEQRES 1 A 375 ASP ARG PRO ARG PHE SER PHE SER ILE ALA ALA ARG GLU SEQRES 2 A 375 GLY LYS ALA ARG THR GLY THR ILE GLU MET LYS ARG GLY SEQRES 3 A 375 VAL ILE ARG THR PRO ALA PHE MET PRO VAL GLY THR ALA SEQRES 4 A 375 ALA THR VAL LYS ALA LEU LYS PRO GLU THR VAL ARG ALA SEQRES 5 A 375 THR GLY ALA ASP ILE ILE LEU GLY ASN THR TYR HIS LEU SEQRES 6 A 375 MET LEU ARG PRO GLY ALA GLU ARG ILE ALA LYS LEU GLY SEQRES 7 A 375 GLY LEU HIS SER PHE MET GLY TRP ASP ARG PRO ILE LEU SEQRES 8 A 375 THR ASP SER GLY GLY TYR GLN VAL MET SER LEU SER SER SEQRES 9 A 375 LEU THR LYS GLN SER GLU GLU GLY VAL THR PHE LYS SER SEQRES 10 A 375 HIS LEU ASP GLY SER ARG HIS MET LEU SER PRO GLU ARG SEQRES 11 A 375 SER ILE GLU ILE GLN HIS LEU LEU GLY SER ASP ILE VAL SEQRES 12 A 375 MET ALA PHE ASP GLU CYS THR PRO TYR PRO ALA THR PRO SEQRES 13 A 375 SER ARG ALA ALA SER SER MET GLU ARG SER MET ARG TRP SEQRES 14 A 375 ALA LYS ARG SER ARG ASP ALA PHE ASP SER ARG LYS GLU SEQRES 15 A 375 GLN ALA GLU ASN ALA ALA LEU PHE GLY ILE GLN GLN GLY SEQRES 16 A 375 SER VAL PHE GLU ASN LEU ARG GLN GLN SER ALA ASP ALA SEQRES 17 A 375 LEU ALA GLU ILE GLY PHE ASP GLY TYR ALA VAL GLY GLY SEQRES 18 A 375 LEU ALA VAL GLY GLU GLY GLN ASP GLU MET PHE ARG VAL SEQRES 19 A 375 LEU ASP PHE SER VAL PRO MET LEU PRO ASP ASP LYS PRO SEQRES 20 A 375 HIS TYR LEU MET GLY VAL GLY LYS PRO ASP ASP ILE VAL SEQRES 21 A 375 GLY ALA VAL GLU ARG GLY ILE ASP MET PHE ASP CYS VAL SEQRES 22 A 375 LEU PRO THR ARG SER GLY ARG ASN GLY GLN ALA PHE THR SEQRES 23 A 375 TRP ASP GLY PRO ILE ASN ILE ARG ASN ALA ARG PHE SER SEQRES 24 A 375 GLU ASP LEU LYS PRO LEU ASP SER GLU CYS HIS CYS ALA SEQRES 25 A 375 VAL CYS GLN LYS TRP SER ARG ALA TYR ILE HIS HIS LEU SEQRES 26 A 375 ILE ARG ALA GLY GLU ILE LEU GLY ALA MET LEU MET THR SEQRES 27 A 375 GLU HIS ASN ILE ALA PHE TYR GLN GLN LEU MET GLN LYS SEQRES 28 A 375 ILE ARG ASP SER ILE SER GLU GLY ARG PHE SER GLN PHE SEQRES 29 A 375 ALA GLN ASP PHE ARG ALA ARG TYR PHE ALA ARG HET GOL A 401 6 HET DMS A 402 4 HET ZN A 403 1 HET K7H A 404 16 HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETNAM ZN ZINC ION HETNAM K7H ~{N}2-METHYL-7,8-DIHYDRO-3~{H}-IMIDAZO[4,5- HETNAM 2 K7H G]QUINAZOLINE-2,6-DIAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 DMS C2 H6 O S FORMUL 4 ZN ZN 2+ FORMUL 5 K7H C10 H12 N6 FORMUL 6 HOH *192(H2 O) HELIX 1 AA1 LYS A 55 THR A 62 1 8 HELIX 2 AA2 THR A 71 ARG A 77 1 7 HELIX 3 AA3 GLY A 79 LEU A 86 1 8 HELIX 4 AA4 GLY A 88 GLY A 94 1 7 HELIX 5 AA5 GLY A 104 LEU A 111 1 8 HELIX 6 AA6 SER A 136 GLY A 148 1 13 HELIX 7 AA7 THR A 164 SER A 188 1 25 HELIX 8 AA8 ARG A 189 ALA A 196 1 8 HELIX 9 AA9 PHE A 207 GLY A 222 1 16 HELIX 10 AB1 GLY A 236 VAL A 248 1 13 HELIX 11 AB2 PRO A 249 LEU A 251 5 3 HELIX 12 AB3 LYS A 264 GLU A 273 1 10 HELIX 13 AB4 VAL A 282 ASN A 290 1 9 HELIX 14 AB5 ASN A 304 SER A 308 5 5 HELIX 15 AB6 CYS A 320 TRP A 326 1 7 HELIX 16 AB7 SER A 327 ALA A 337 1 11 HELIX 17 AB8 GLU A 339 GLU A 367 1 29 HELIX 18 AB9 ARG A 369 PHE A 382 1 14 SHEET 1 AA1 3 PHE A 14 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 8 ALA A 41 MET A 43 0 SHEET 2 AA2 8 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 AA2 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 8 ALA A 197 GLN A 202 1 N GLN A 202 O ALA A 227 SHEET 6 AA2 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 8 ILE A 99 ASP A 102 1 N THR A 101 O ILE A 151 SHEET 8 AA2 8 ILE A 67 ASN A 70 1 N GLY A 69 O LEU A 100 SHEET 1 AA3 3 LYS A 116 GLN A 117 0 SHEET 2 AA3 3 VAL A 122 PHE A 124 -1 O THR A 123 N LYS A 116 SHEET 3 AA3 3 HIS A 133 LEU A 135 -1 O HIS A 133 N PHE A 124 SHEET 1 AA4 2 GLN A 292 ALA A 293 0 SHEET 2 AA4 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 403 1555 1555 2.34 LINK SG CYS A 320 ZN ZN A 403 1555 1555 2.37 LINK SG CYS A 323 ZN ZN A 403 1555 1555 2.21 LINK ND1 HIS A 349 ZN ZN A 403 1555 1555 2.14 CISPEP 1 THR A 39 PRO A 40 0 0.85 CISPEP 2 ARG A 77 PRO A 78 0 5.82 CISPEP 3 TYR A 161 PRO A 162 0 -3.02 CISPEP 4 VAL A 262 GLY A 263 0 -3.17 SITE 1 AC1 6 ARG A 11 MET A 32 LYS A 33 ARG A 34 SITE 2 AC1 6 GLY A 35 VAL A 36 SITE 1 AC2 5 GLU A 57 GLY A 94 TRP A 95 ASP A 96 SITE 2 AC2 5 HOH A 503 SITE 1 AC3 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC4 9 ASP A 102 SER A 103 TYR A 106 ASP A 156 SITE 2 AC4 9 CYS A 158 ILE A 201 LEU A 231 ALA A 232 SITE 3 AC4 9 MET A 260 CRYST1 89.629 64.588 71.176 90.00 93.34 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011157 0.000000 0.000652 0.00000 SCALE2 0.000000 0.015483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014074 0.00000