data_6RLS # _entry.id 6RLS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.318 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6RLS WWPDB D_1292101502 BMRB 34398 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Concerted dynamics of metallo-base pairs in an A/B-form helical transition (minor species)' 6FY7 unspecified PDB 'Concerted dynamics of metallo-base pairs in an A/B-form helical transition (major species)' 6FY6 unspecified BMRB 'Concerted dynamics of metallo-base pairs in an A/B-form helical transition (apo species)' 34398 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6RLS _pdbx_database_status.recvd_initial_deposition_date 2019-05-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Schmidt, O.P.' 1 ? 'Jurt, S.' 2 ? 'Johannsen, S.' 3 ? 'Karimi, A.' 4 ? 'Sigel, R.K.O.' 5 ? 'Luedtke, N.W.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 4818 _citation.page_last 4818 _citation.title 'Concerted dynamics of metallo-base pairs in an A/B-form helical transition.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-019-12440-x _citation.pdbx_database_id_PubMed 31645548 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schmidt, O.P.' 1 ? primary 'Jurt, S.' 2 ? primary 'Johannsen, S.' 3 0000-0001-7973-8996 primary 'Karimi, A.' 4 ? primary 'Sigel, R.K.O.' 5 ? primary 'Luedtke, N.W.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*CP*GP*TP*CP*TP*CP*AP*TP*GP*AP*TP*AP*CP*G)-3')_apo ; _entity.formula_weight 4255.778 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DC)(DT)(DC)(DA)(DT)(DG)(DA)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTCTCATGATACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DC n 1 5 DT n 1 6 DC n 1 7 DA n 1 8 DT n 1 9 DG n 1 10 DA n 1 11 DT n 1 12 DA n 1 13 DC n 1 14 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6RLS _struct_ref.pdbx_db_accession 6RLS _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6RLS A 1 ? 14 ? 6RLS 1 ? 14 ? 1 14 2 1 6RLS B 1 ? 14 ? 6RLS 15 ? 28 ? 15 28 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 2 2 '2D 1H-1H NOESY' 1 isotropic 3 2 2 '2D 1H-1H TOCSY' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 278 atm ambient 7.75 50 ? ? mM conditions_1 ? pH ? ? K 2 298 atm ambient 7.35 50 ? ? mM conditions_2 ? pD ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.3 mM polydeoxyribonucleotide, 90% H2O/10% D2O' '90% H2O/10% D2O' apo_H2O/D2O solution ? 2 '0.3 mM polydeoxyribonucleotide, 100% D2O' '100% D2O' apo_D2O solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6RLS _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;2000 preliminary structures were calculated. The 20 lowest energy structures were selected and subsequently refined. Of the 200 refined conformers calculated the 21 lowest energy structures were chosen ; _pdbx_nmr_refine.software_ordinal 5 # _pdbx_nmr_ensemble.entry_id 6RLS _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6RLS _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin 4.0.3 'Bruker Biospin' 2 'structure calculation' Xplor-NIH 2.46 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard 5 refinement Xplor-NIH 2.46 'Schwieters, Kuszewski, Tjandra and Clore' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6RLS _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6RLS _struct.title 'Concerted dynamics of metallo-base pairs in an A/B-form helical transition (apo species)' _struct.pdbx_descriptor ;DNA (5'-D(*CP*GP*TP*CP*TP*CP*AP*TP*GP*AP*TP*AP*CP*G)-3')_major ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6RLS _struct_keywords.text 'metallated duplex DNA, B-form helix, A-form helix, mercury(II)-mediated base pair, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 14 N1 ? ? A DC 1 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 14 O6 ? ? A DC 1 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 14 N2 ? ? A DC 1 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 13 N3 ? ? A DG 2 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 13 O2 ? ? A DG 2 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 13 N4 ? ? A DG 2 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 3 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 3 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DT 11 O4 ? ? A DC 4 B DT 25 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? hydrog10 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 5 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 5 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 6 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 6 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 6 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 7 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 7 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 8 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 8 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 9 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 9 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 9 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 10 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 10 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DC 4 N4 ? ? A DT 11 B DC 18 1_555 ? ? ? ? ? ? 'DT-DC MISPAIR' ? ? hydrog25 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 12 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 12 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 13 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 13 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 13 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 14 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 14 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 14 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6RLS _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DC 13 13 13 DC DC A . n A 1 14 DG 14 14 14 DG DG A . n B 1 1 DC 1 15 15 DC DC B . n B 1 2 DG 2 16 16 DG DG B . n B 1 3 DT 3 17 17 DT DT B . n B 1 4 DC 4 18 18 DC DC B . n B 1 5 DT 5 19 19 DT DT B . n B 1 6 DC 6 20 20 DC DC B . n B 1 7 DA 7 21 21 DA DA B . n B 1 8 DT 8 22 22 DT DT B . n B 1 9 DG 9 23 23 DG DG B . n B 1 10 DA 10 24 24 DA DA B . n B 1 11 DT 11 25 25 DT DT B . n B 1 12 DA 12 26 26 DA DA B . n B 1 13 DC 13 27 27 DC DC B . n B 1 14 DG 14 28 28 DG DG B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1210 ? 1 MORE -6 ? 1 'SSA (A^2)' 5250 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-10-09 2 'Structure model' 1 1 2019-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_database_related # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' 13 2 'Structure model' '_pdbx_database_related.details' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 polydeoxyribonucleotide 0.3 ? mM none 2 polydeoxyribonucleotide 0.3 ? mM none # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6RLS 'double helix' 6RLS 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 14 1_555 0.011 -0.062 -0.034 5.161 -13.360 2.731 1 A_DC1:DG28_B A 1 ? B 28 ? 19 1 1 A DG 2 1_555 B DC 13 1_555 -0.189 -0.073 -0.004 -0.963 -10.294 1.211 2 A_DG2:DC27_B A 2 ? B 27 ? 19 1 1 A DT 3 1_555 B DA 12 1_555 0.042 -0.220 0.301 -7.893 -16.698 0.048 3 A_DT3:DA26_B A 3 ? B 26 ? 20 1 1 A DC 4 1_555 B DT 11 1_555 2.274 -1.509 1.045 -5.441 -18.414 -6.260 4 A_DC4:DT25_B A 4 ? B 25 ? ? 1 1 A DT 5 1_555 B DA 10 1_555 -0.086 -0.099 0.120 -8.192 -11.715 1.074 5 A_DT5:DA24_B A 5 ? B 24 ? 20 1 1 A DC 6 1_555 B DG 9 1_555 -0.318 -0.233 -0.036 -2.774 -7.387 1.078 6 A_DC6:DG23_B A 6 ? B 23 ? 19 1 1 A DA 7 1_555 B DT 8 1_555 0.189 -0.066 0.087 -0.060 -17.615 0.227 7 A_DA7:DT22_B A 7 ? B 22 ? 20 1 1 A DT 8 1_555 B DA 7 1_555 -0.179 -0.082 0.104 0.310 -17.748 0.046 8 A_DT8:DA21_B A 8 ? B 21 ? 20 1 1 A DG 9 1_555 B DC 6 1_555 0.339 -0.263 -0.075 2.853 -7.848 1.244 9 A_DG9:DC20_B A 9 ? B 20 ? 19 1 1 A DA 10 1_555 B DT 5 1_555 0.047 -0.132 0.095 7.970 -12.346 1.198 10 A_DA10:DT19_B A 10 ? B 19 ? 20 1 1 A DT 11 1_555 B DC 4 1_555 -2.342 -1.525 1.060 6.085 -18.816 -6.233 11 A_DT11:DC18_B A 11 ? B 18 ? ? 1 1 A DA 12 1_555 B DT 3 1_555 -0.076 -0.202 0.272 7.701 -16.404 -0.058 12 A_DA12:DT17_B A 12 ? B 17 ? 20 1 1 A DC 13 1_555 B DG 2 1_555 0.150 -0.020 -0.036 0.924 -10.247 1.103 13 A_DC13:DG16_B A 13 ? B 16 ? 19 1 1 A DG 14 1_555 B DC 1 1_555 -0.005 -0.010 -0.062 -4.788 -13.342 2.153 14 A_DG14:DC15_B A 14 ? B 15 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 14 1_555 A DG 2 1_555 B DC 13 1_555 0.235 0.515 3.450 0.567 11.716 34.592 -0.936 -0.291 3.441 19.038 -0.921 36.469 1 AA_DC1DG2:DC27DG28_BB A 1 ? B 28 ? A 2 ? B 27 ? 1 A DG 2 1_555 B DC 13 1_555 A DT 3 1_555 B DA 12 1_555 -0.059 -0.533 3.236 -2.308 10.244 34.593 -2.264 -0.220 2.962 16.755 3.774 36.105 2 AA_DG2DT3:DA26DC27_BB A 2 ? B 27 ? A 3 ? B 26 ? 1 A DT 3 1_555 B DA 12 1_555 A DC 4 1_555 B DT 11 1_555 -0.650 0.180 3.153 -5.759 18.691 41.634 -1.386 0.337 3.027 24.725 7.618 45.814 3 AA_DT3DC4:DT25DA26_BB A 3 ? B 26 ? A 4 ? B 25 ? 1 A DC 4 1_555 B DT 11 1_555 A DT 5 1_555 B DA 10 1_555 0.426 -0.856 3.199 9.101 3.724 23.984 -2.927 1.531 2.993 8.518 -20.816 25.894 4 AA_DC4DT5:DA24DT25_BB A 4 ? B 25 ? A 5 ? B 24 ? 1 A DT 5 1_555 B DA 10 1_555 A DC 6 1_555 B DG 9 1_555 0.047 -0.252 3.036 0.987 5.693 29.239 -1.586 0.098 2.935 11.141 -1.932 29.792 5 AA_DT5DC6:DG23DA24_BB A 5 ? B 24 ? A 6 ? B 23 ? 1 A DC 6 1_555 B DG 9 1_555 A DA 7 1_555 B DT 8 1_555 -0.132 0.566 3.364 0.647 1.756 43.002 0.593 0.246 3.381 2.394 -0.883 43.041 6 AA_DC6DA7:DT22DG23_BB A 6 ? B 23 ? A 7 ? B 22 ? 1 A DA 7 1_555 B DT 8 1_555 A DT 8 1_555 B DA 7 1_555 -0.018 -0.588 2.913 -0.255 -1.400 31.500 -0.849 -0.009 2.936 -2.577 0.469 31.531 7 AA_DA7DT8:DA21DT22_BB A 7 ? B 22 ? A 8 ? B 21 ? 1 A DT 8 1_555 B DA 7 1_555 A DG 9 1_555 B DC 6 1_555 0.129 0.572 3.362 -0.350 1.633 43.096 0.613 -0.211 3.379 2.222 0.476 43.127 8 AA_DT8DG9:DC20DA21_BB A 8 ? B 21 ? A 9 ? B 20 ? 1 A DG 9 1_555 B DC 6 1_555 A DA 10 1_555 B DT 5 1_555 -0.048 -0.233 3.031 -1.268 5.754 29.234 -1.558 -0.151 2.932 11.256 2.480 29.809 9 AA_DG9DA10:DT19DC20_BB A 9 ? B 20 ? A 10 ? B 19 ? 1 A DA 10 1_555 B DT 5 1_555 A DT 11 1_555 B DC 4 1_555 -0.428 -0.866 3.160 -9.293 3.487 23.959 -2.872 -1.552 2.963 7.976 21.256 25.906 10 AA_DA10DT11:DC18DT19_BB A 10 ? B 19 ? A 11 ? B 18 ? 1 A DT 11 1_555 B DC 4 1_555 A DA 12 1_555 B DT 3 1_555 0.658 0.187 3.188 6.020 18.400 41.945 -1.357 -0.319 3.073 24.218 -7.923 46.014 11 AA_DT11DA12:DT17DC18_BB A 11 ? B 18 ? A 12 ? B 17 ? 1 A DA 12 1_555 B DT 3 1_555 A DC 13 1_555 B DG 2 1_555 0.078 -0.539 3.232 2.559 10.242 34.312 -2.298 0.228 2.953 16.872 -4.216 35.852 12 AA_DA12DC13:DG16DT17_BB A 12 ? B 17 ? A 13 ? B 16 ? 1 A DC 13 1_555 B DG 2 1_555 A DG 14 1_555 B DC 1 1_555 -0.234 0.502 3.440 -0.451 11.791 34.432 -0.971 0.308 3.425 19.232 0.736 36.339 13 AA_DC13DG14:DC15DG16_BB A 13 ? B 16 ? A 14 ? B 15 ? # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number 165949 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #