HEADER PROTEIN BINDING 03-MAY-19 6RLZ TITLE CRYSTAL STRUCTURE OF 14-3-3ZETA IN COMPLEX WITH A MACROCYCLIC 8-MER TITLE 2 PEPTIDE DERIVED FROM EXOS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN ZETA/DELTA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN KINASE C INHIBITOR PROTEIN 1,KCIP-1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ETME; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YWHAZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 12 ORGANISM_TAXID: 287 KEYWDS PROTEIN-PROTEIN-INTERACTION MACROCYCLE PEPTIDE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.WALLRAVEN,T.N.GROSSMANN,S.HENNIG REVDAT 2 25-MAR-20 6RLZ 1 JRNL REVDAT 1 18-MAR-20 6RLZ 0 JRNL AUTH K.WALLRAVEN,F.L.HOLMELIN,A.GLAS,S.HENNIG,A.I.FROLOV, JRNL AUTH 2 T.N.GROSSMANN JRNL TITL ADAPTING FREE ENERGY PERTURBATION SIMULATIONS FOR LARGE JRNL TITL 2 MACROCYCLIC LIGANDS: HOW TO DISSECT CONTRIBUTIONS FROM JRNL TITL 3 DIRECT BINDING AND FREE LIGAND FLEXIBILITY. JRNL REF CHEM SCI V. 11 2269 2020 JRNL REFN ISSN 2041-6520 JRNL PMID 32180932 JRNL DOI 10.1039/C9SC04705K REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 5069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 375 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.4740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3466 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22000 REMARK 3 B22 (A**2) : -1.22000 REMARK 3 B33 (A**2) : 3.95000 REMARK 3 B12 (A**2) : -0.61000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.934 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.701 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 95.852 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3520 ; 0.002 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4749 ; 0.841 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 4.550 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;37.381 ;23.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;21.805 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.924 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2622 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1875 ; 2.073 ; 8.780 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2311 ; 3.527 ;13.115 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1645 ; 1.733 ; 8.723 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 16006 ; 8.380 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): -38.9501 22.7653 41.4202 REMARK 3 T TENSOR REMARK 3 T11: 0.0848 T22: 0.4140 REMARK 3 T33: 0.5268 T12: 0.0180 REMARK 3 T13: -0.0686 T23: -0.1326 REMARK 3 L TENSOR REMARK 3 L11: 0.7795 L22: 2.7658 REMARK 3 L33: 2.4290 L12: 0.1240 REMARK 3 L13: 1.2069 L23: -0.5152 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: 0.1128 S13: 0.1399 REMARK 3 S21: -0.4459 S22: -0.0339 S23: 0.7808 REMARK 3 S31: 0.1249 S32: 0.5786 S33: -0.0042 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 230 REMARK 3 ORIGIN FOR THE GROUP (A): -24.3185 -4.7203 60.4989 REMARK 3 T TENSOR REMARK 3 T11: 0.3037 T22: 0.1959 REMARK 3 T33: 0.6222 T12: 0.1026 REMARK 3 T13: 0.0728 T23: 0.1889 REMARK 3 L TENSOR REMARK 3 L11: 4.2031 L22: 1.5576 REMARK 3 L33: 6.6998 L12: 0.9519 REMARK 3 L13: 3.3848 L23: -0.2670 REMARK 3 S TENSOR REMARK 3 S11: 0.2584 S12: -0.1778 S13: -0.9951 REMARK 3 S21: -0.1273 S22: -0.0774 S23: 0.1331 REMARK 3 S31: 0.8264 S32: 0.5803 S33: -0.1809 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.1488 REMARK 3 T33: 0.1488 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97870 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5633 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 33.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 10.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM FORMATE 20% PEG 3350 REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.60000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.20000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.60000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 206 REMARK 465 MET B 1 REMARK 465 LEU B 206 REMARK 465 SER B 207 REMARK 465 GLU B 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 ASN A 4 CG OD1 ND2 REMARK 470 LYS A 9 CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 103 CD CE NZ REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 ASN A 173 CG OD1 ND2 REMARK 470 PHE A 174 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 SER A 214 OG REMARK 470 GLN A 219 CG CD OE1 NE2 REMARK 470 ASP B 2 CG OD1 OD2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 MET B 26 CG SD CE REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 ASN B 42 CG OD1 ND2 REMARK 470 LYS B 49 CD CE NZ REMARK 470 ARG B 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 THR B 69 OG1 CG2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 75 CE NZ REMARK 470 GLN B 76 CG CD OE1 NE2 REMARK 470 GLN B 77 CG CD OE1 NE2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 ASP B 92 CG OD1 OD2 REMARK 470 LEU B 101 CG CD1 CD2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LEU B 105 CG CD1 CD2 REMARK 470 GLN B 111 CG CD OE1 NE2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 TYR B 126 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 147 CG CD OE1 NE2 REMARK 470 TYR B 149 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLN B 161 CG CD OE1 NE2 REMARK 470 THR B 163 CB OG1 CG2 REMARK 470 ARG B 167 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 174 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 GLU B 186 CG CD OE1 OE2 REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 GLU B 202 CG CD OE1 OE2 REMARK 470 THR B 205 OG1 CG2 REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 470 ASP B 213 CG OD1 OD2 REMARK 470 LEU B 216 CG CD1 CD2 REMARK 470 GLN B 219 CG CD OE1 NE2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 R6E D 422 CB2 CG2 REMARK 470 6ZS D 425 CB1 REMARK 470 LEU D 428 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 50.18 -95.66 REMARK 500 LYS A 68 63.54 -107.68 REMARK 500 LYS A 68 63.54 -106.28 REMARK 500 ALA A 72 -163.97 -74.40 REMARK 500 LYS A 157 2.52 -64.99 REMARK 500 LYS A 158 -78.98 -105.88 REMARK 500 GLU A 159 54.03 -105.81 REMARK 500 TYR A 179 -79.19 -71.85 REMARK 500 ILE A 181 -70.63 -99.66 REMARK 500 TYR A 211 -121.97 62.20 REMARK 500 GLU B 5 -6.69 -53.39 REMARK 500 ARG B 18 68.95 -112.04 REMARK 500 SER B 37 -168.39 -73.72 REMARK 500 LYS B 68 -26.98 -145.99 REMARK 500 LYS B 75 -32.41 -138.43 REMARK 500 PHE B 104 54.20 -143.74 REMARK 500 GLU B 159 -37.73 -134.40 REMARK 500 SER B 184 60.71 -116.16 REMARK 500 ALA B 201 32.01 -79.44 REMARK 500 R6E C 422 -69.93 -69.95 REMARK 500 ASP C 427 75.80 63.78 REMARK 500 R6E D 422 -37.49 -126.42 REMARK 500 ASP D 427 70.98 49.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP C 424 -11.38 REMARK 500 GLY D 421 -11.58 REMARK 500 R6E D 422 10.63 REMARK 500 6ZS D 425 -10.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 322 DISTANCE = 6.26 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J31 RELATED DB: PDB REMARK 900 RELATED ID: 4N7Y RELATED DB: PDB REMARK 900 RELATED ID: 4N84 RELATED DB: PDB REMARK 900 RELATED ID: 4N7G RELATED DB: PDB DBREF 6RLZ A 1 230 UNP P63104 1433Z_HUMAN 1 230 DBREF 6RLZ B 1 230 UNP P63104 1433Z_HUMAN 1 230 DBREF 6RLZ C 421 428 PDB 6RLZ 6RLZ 421 428 DBREF 6RLZ D 421 428 PDB 6RLZ 6RLZ 421 428 SEQRES 1 A 230 MET ASP LYS ASN GLU LEU VAL GLN LYS ALA LYS LEU ALA SEQRES 2 A 230 GLU GLN ALA GLU ARG TYR ASP ASP MET ALA ALA CYS MET SEQRES 3 A 230 LYS SER VAL THR GLU GLN GLY ALA GLU LEU SER ASN GLU SEQRES 4 A 230 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL VAL SEQRES 5 A 230 GLY ALA ARG ARG SER SER TRP ARG VAL VAL SER SER ILE SEQRES 6 A 230 GLU GLN LYS THR GLU GLY ALA GLU LYS LYS GLN GLN MET SEQRES 7 A 230 ALA ARG GLU TYR ARG GLU LYS ILE GLU THR GLU LEU ARG SEQRES 8 A 230 ASP ILE CYS ASN ASP VAL LEU SER LEU LEU GLU LYS PHE SEQRES 9 A 230 LEU ILE PRO ASN ALA SER GLN ALA GLU SER LYS VAL PHE SEQRES 10 A 230 TYR LEU LYS MET LYS GLY ASP TYR TYR ARG TYR LEU ALA SEQRES 11 A 230 GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY ILE VAL ASP SEQRES 12 A 230 GLN SER GLN GLN ALA TYR GLN GLU ALA PHE GLU ILE SER SEQRES 13 A 230 LYS LYS GLU MET GLN PRO THR HIS PRO ILE ARG LEU GLY SEQRES 14 A 230 LEU ALA LEU ASN PHE SER VAL PHE TYR TYR GLU ILE LEU SEQRES 15 A 230 ASN SER PRO GLU LYS ALA CYS SER LEU ALA LYS THR ALA SEQRES 16 A 230 PHE ASP GLU ALA ILE ALA GLU LEU ASP THR LEU SER GLU SEQRES 17 A 230 GLU SER TYR LYS ASP SER THR LEU ILE MET GLN LEU LEU SEQRES 18 A 230 ARG ASP ASN LEU THR LEU TRP THR SER SEQRES 1 B 230 MET ASP LYS ASN GLU LEU VAL GLN LYS ALA LYS LEU ALA SEQRES 2 B 230 GLU GLN ALA GLU ARG TYR ASP ASP MET ALA ALA CYS MET SEQRES 3 B 230 LYS SER VAL THR GLU GLN GLY ALA GLU LEU SER ASN GLU SEQRES 4 B 230 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL VAL SEQRES 5 B 230 GLY ALA ARG ARG SER SER TRP ARG VAL VAL SER SER ILE SEQRES 6 B 230 GLU GLN LYS THR GLU GLY ALA GLU LYS LYS GLN GLN MET SEQRES 7 B 230 ALA ARG GLU TYR ARG GLU LYS ILE GLU THR GLU LEU ARG SEQRES 8 B 230 ASP ILE CYS ASN ASP VAL LEU SER LEU LEU GLU LYS PHE SEQRES 9 B 230 LEU ILE PRO ASN ALA SER GLN ALA GLU SER LYS VAL PHE SEQRES 10 B 230 TYR LEU LYS MET LYS GLY ASP TYR TYR ARG TYR LEU ALA SEQRES 11 B 230 GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY ILE VAL ASP SEQRES 12 B 230 GLN SER GLN GLN ALA TYR GLN GLU ALA PHE GLU ILE SER SEQRES 13 B 230 LYS LYS GLU MET GLN PRO THR HIS PRO ILE ARG LEU GLY SEQRES 14 B 230 LEU ALA LEU ASN PHE SER VAL PHE TYR TYR GLU ILE LEU SEQRES 15 B 230 ASN SER PRO GLU LYS ALA CYS SER LEU ALA LYS THR ALA SEQRES 16 B 230 PHE ASP GLU ALA ILE ALA GLU LEU ASP THR LEU SER GLU SEQRES 17 B 230 GLU SER TYR LYS ASP SER THR LEU ILE MET GLN LEU LEU SEQRES 18 B 230 ARG ASP ASN LEU THR LEU TRP THR SER SEQRES 1 C 8 GLY R6E LEU ASP 6ZS LEU ASP LEU SEQRES 1 D 8 GLY R6E LEU ASP 6ZS LEU ASP LEU HET R6E C 422 12 HET 6ZS C 425 7 HET R6E D 422 10 HET 6ZS D 425 6 HETNAM R6E (2~{R})-2-AZANYL-2-ETHYL-OCTANOIC ACID HETNAM 6ZS L-ISOVALINE FORMUL 3 R6E 2(C10 H21 N O2) FORMUL 3 6ZS 2(C5 H11 N O2) FORMUL 5 HOH *28(H2 O) HELIX 1 AA1 ASN A 4 ALA A 16 1 13 HELIX 2 AA2 ARG A 18 GLN A 32 1 15 HELIX 3 AA3 SER A 37 LYS A 68 1 32 HELIX 4 AA4 LYS A 75 PHE A 104 1 30 HELIX 5 AA5 PHE A 104 ALA A 109 1 6 HELIX 6 AA6 GLN A 111 ALA A 133 1 23 HELIX 7 AA7 ASP A 137 MET A 160 1 24 HELIX 8 AA8 HIS A 164 ILE A 181 1 18 HELIX 9 AA9 SER A 184 ALA A 201 1 18 HELIX 10 AB1 SER A 210 SER A 230 1 21 HELIX 11 AB2 LYS B 3 GLU B 5 5 3 HELIX 12 AB3 LEU B 6 ALA B 16 1 11 HELIX 13 AB4 ARG B 18 GLN B 32 1 15 HELIX 14 AB5 SER B 37 GLU B 66 1 30 HELIX 15 AB6 GLN B 76 LEU B 105 1 30 HELIX 16 AB7 ALA B 112 ALA B 133 1 22 HELIX 17 AB8 ASP B 137 LYS B 157 1 21 HELIX 18 AB9 HIS B 164 ILE B 181 1 18 HELIX 19 AC1 SER B 184 ALA B 201 1 18 HELIX 20 AC2 THR B 215 TRP B 228 1 14 LINK C GLY C 421 N R6E C 422 1555 1555 1.26 LINK C R6E C 422 N LEU C 423 1555 1555 1.25 LINK CH R6E C 422 C2 6ZS C 425 1555 1555 1.46 LINK C ASP C 424 N 6ZS C 425 1555 1555 1.27 LINK C 6ZS C 425 N LEU C 426 1555 1555 1.25 LINK C GLY D 421 N R6E D 422 1555 1555 1.27 LINK C R6E D 422 N LEU D 423 1555 1555 1.25 LINK CH R6E D 422 C2 6ZS D 425 1555 1555 1.46 LINK C ASP D 424 N 6ZS D 425 1555 1555 1.27 LINK C 6ZS D 425 N LEU D 426 1555 1555 1.25 CRYST1 98.800 98.800 94.800 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010121 0.005844 0.000000 0.00000 SCALE2 0.000000 0.011687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010549 0.00000