HEADER HYDROLASE 06-MAY-19 6RM8 TITLE CRYSTAL STRUCTURE OF THE DEAH-BOX ATPASE PRP2 IN COMPLEX WITH SPP2 AND TITLE 2 ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MRNA SPLICING FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PUTATIVE PRE-MRNA SPLICING PROTEIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 3 1495; SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 GENE: CTHT_0063660; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 10 1495; SOURCE 11 ORGANISM_TAXID: 759272; SOURCE 12 GENE: CTHT_0071470; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRP2, DEAH-BOX ATPASE, G-PATCH, SPLICEOSOME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.HAMANN,P.NEUMANN,R.FICNER REVDAT 3 24-JAN-24 6RM8 1 REMARK LINK REVDAT 2 19-FEB-20 6RM8 1 JRNL REVDAT 1 05-FEB-20 6RM8 0 JRNL AUTH F.HAMANN,A.SCHMITT,F.FAVRETTO,R.HOFELE,P.NEUMANN,S.XIANG, JRNL AUTH 2 H.URLAUB,M.ZWECKSTETTER,R.FICNER JRNL TITL STRUCTURAL ANALYSIS OF THE INTRINSICALLY DISORDERED SPLICING JRNL TITL 2 FACTOR SPP2 AND ITS BINDING TO THE DEAH-BOX ATPASE PRP2. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 2948 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 31974312 JRNL DOI 10.1073/PNAS.1907960117 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5364 - 5.2898 1.00 2853 150 0.1806 0.1818 REMARK 3 2 5.2898 - 4.1999 1.00 2703 142 0.1534 0.1676 REMARK 3 3 4.1999 - 3.6693 1.00 2696 142 0.1643 0.2001 REMARK 3 4 3.6693 - 3.3340 1.00 2668 141 0.1904 0.1794 REMARK 3 5 3.3340 - 3.0951 1.00 2631 138 0.2191 0.2601 REMARK 3 6 3.0951 - 2.9127 1.00 2641 139 0.2168 0.2301 REMARK 3 7 2.9127 - 2.7668 1.00 2665 140 0.2147 0.2774 REMARK 3 8 2.7668 - 2.6464 1.00 2645 140 0.2162 0.2222 REMARK 3 9 2.6464 - 2.5445 1.00 2614 137 0.2298 0.2325 REMARK 3 10 2.5445 - 2.4567 1.00 2634 139 0.2206 0.2401 REMARK 3 11 2.4567 - 2.3799 1.00 2593 136 0.2267 0.2549 REMARK 3 12 2.3799 - 2.3119 1.00 2633 139 0.2187 0.2350 REMARK 3 13 2.3119 - 2.2510 1.00 2620 138 0.2256 0.2535 REMARK 3 14 2.2510 - 2.1961 1.00 2615 138 0.2509 0.2846 REMARK 3 15 2.1961 - 2.1462 1.00 2564 135 0.2570 0.2720 REMARK 3 16 2.1462 - 2.1005 1.00 2638 138 0.2582 0.2952 REMARK 3 17 2.1005 - 2.0585 1.00 2627 139 0.2869 0.3204 REMARK 3 18 2.0585 - 2.0197 1.00 2568 135 0.3023 0.3443 REMARK 3 19 2.0197 - 1.9836 1.00 2609 137 0.3180 0.3054 REMARK 3 20 1.9836 - 1.9500 1.00 2590 137 0.3226 0.3464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3844 2.8916 -0.8178 REMARK 3 T TENSOR REMARK 3 T11: 0.5403 T22: 0.3991 REMARK 3 T33: 0.2943 T12: -0.1016 REMARK 3 T13: -0.0799 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 0.9903 L22: 1.1159 REMARK 3 L33: 1.3160 L12: 0.1568 REMARK 3 L13: 0.2003 L23: 1.1440 REMARK 3 S TENSOR REMARK 3 S11: -0.1518 S12: 0.2669 S13: -0.0071 REMARK 3 S21: -0.5013 S22: 0.0726 S23: 0.1555 REMARK 3 S31: -0.5428 S32: 0.1152 S33: 0.0538 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 476 THROUGH 720 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3679 0.9181 17.8155 REMARK 3 T TENSOR REMARK 3 T11: 0.3234 T22: 0.3192 REMARK 3 T33: 0.3890 T12: 0.0234 REMARK 3 T13: -0.0557 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.9999 L22: 1.0021 REMARK 3 L33: 1.5980 L12: 0.2154 REMARK 3 L13: 0.8141 L23: 0.7646 REMARK 3 S TENSOR REMARK 3 S11: -0.1116 S12: -0.0789 S13: -0.0536 REMARK 3 S21: -0.1178 S22: -0.1328 S23: 0.2899 REMARK 3 S31: -0.2218 S32: -0.3795 S33: 0.1446 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 721 THROUGH 920 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6218 -13.7294 34.5303 REMARK 3 T TENSOR REMARK 3 T11: 0.2715 T22: 0.2973 REMARK 3 T33: 0.3760 T12: -0.0064 REMARK 3 T13: -0.0497 T23: 0.0796 REMARK 3 L TENSOR REMARK 3 L11: 1.9980 L22: 1.9121 REMARK 3 L33: 2.2953 L12: 0.1688 REMARK 3 L13: 0.1652 L23: 0.1683 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.1315 S13: -0.1302 REMARK 3 S21: 0.0543 S22: 0.1176 S23: 0.2734 REMARK 3 S31: 0.1052 S32: -0.2976 S33: -0.0230 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 208 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2238 16.5168 37.1053 REMARK 3 T TENSOR REMARK 3 T11: 0.4036 T22: 0.3242 REMARK 3 T33: 0.3942 T12: -0.0359 REMARK 3 T13: -0.0926 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 3.2727 L22: 6.4725 REMARK 3 L33: 4.5907 L12: 0.8428 REMARK 3 L13: 0.4115 L23: -1.7407 REMARK 3 S TENSOR REMARK 3 S11: 0.0409 S12: -0.3677 S13: -0.0162 REMARK 3 S21: 0.3098 S22: -0.0836 S23: -0.0321 REMARK 3 S31: -0.6290 S32: -0.0199 S33: 0.0391 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 223 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6679 24.0988 31.9438 REMARK 3 T TENSOR REMARK 3 T11: 0.6138 T22: 0.3969 REMARK 3 T33: 0.8075 T12: 0.0199 REMARK 3 T13: -0.2058 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 4.3972 L22: 2.9915 REMARK 3 L33: 4.1186 L12: -0.4787 REMARK 3 L13: 0.6393 L23: 0.3389 REMARK 3 S TENSOR REMARK 3 S11: -0.3140 S12: -0.2341 S13: 0.6533 REMARK 3 S21: -0.2700 S22: 0.2025 S23: 0.8045 REMARK 3 S31: -0.6283 S32: -0.4730 S33: 0.2847 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 233 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6415 11.0366 31.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.8106 T22: 0.9429 REMARK 3 T33: 1.3640 T12: 0.0133 REMARK 3 T13: -0.1111 T23: -0.1746 REMARK 3 L TENSOR REMARK 3 L11: 0.0041 L22: 0.0022 REMARK 3 L33: 0.0030 L12: -0.0030 REMARK 3 L13: 0.0034 L23: -0.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.3011 S13: 0.1155 REMARK 3 S21: 0.1154 S22: -0.2030 S23: -0.0252 REMARK 3 S31: -0.6529 S32: 0.0252 S33: 0.3609 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 238 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.1595 6.6584 32.5139 REMARK 3 T TENSOR REMARK 3 T11: 0.5283 T22: 1.0275 REMARK 3 T33: 0.8341 T12: 0.0587 REMARK 3 T13: -0.1806 T23: -0.2293 REMARK 3 L TENSOR REMARK 3 L11: 3.4190 L22: 2.7751 REMARK 3 L33: 4.8273 L12: 0.3736 REMARK 3 L13: 0.8539 L23: 2.2175 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: -1.1909 S13: -0.1352 REMARK 3 S21: 0.5622 S22: -0.3198 S23: 0.1941 REMARK 3 S31: -0.3792 S32: -0.9115 S33: 0.3622 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55604 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 42.526 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.368 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.75 REMARK 200 R MERGE FOR SHELL (I) : 1.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FA5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.5, 350 MM CALCIUM REMARK 280 ACETATE, 19% (W/V) PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.17000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.22000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.22000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.17000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -194.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 262 REMARK 465 PRO A 263 REMARK 465 LEU A 264 REMARK 465 GLY A 265 REMARK 465 ALA A 921 REMARK 465 GLU C 253 REMARK 465 ASP C 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 721 CG CD OE1 OE2 REMARK 470 GLU A 791 CG CD OE1 OE2 REMARK 470 LYS C 231 CG CD CE NZ REMARK 470 LYS C 233 CG CD CE NZ REMARK 470 GLU C 234 CG CD OE1 OE2 REMARK 470 VAL C 235 CG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 292 CD REMARK 480 GLU A 517 CD REMARK 480 ASP A 886 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 373 -108.00 -95.34 REMARK 500 PHE A 462 45.01 -99.26 REMARK 500 PRO A 505 -176.77 -66.79 REMARK 500 ARG A 536 -69.83 -14.06 REMARK 500 THR A 572 -168.95 -79.03 REMARK 500 LEU A 637 44.22 -80.70 REMARK 500 ARG A 657 16.74 -152.49 REMARK 500 ARG A 657 18.88 -153.51 REMARK 500 LEU A 827 -109.46 -100.73 REMARK 500 ASP A 828 27.30 -142.59 REMARK 500 ASN A 854 33.57 -98.23 REMARK 500 THR A 900 -105.67 -125.83 REMARK 500 SER A 907 89.79 63.04 REMARK 500 LYS C 233 94.55 -65.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 327 OG1 REMARK 620 2 ADP A1001 O3B 79.1 REMARK 620 3 HOH A1111 O 88.3 82.5 REMARK 620 4 HOH A1131 O 175.3 102.6 87.7 REMARK 620 5 HOH A1151 O 85.5 101.3 172.0 98.3 REMARK 620 6 HOH A1185 O 92.1 158.4 77.6 84.8 97.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTB A 1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1016 DBREF 6RM8 A 270 921 UNP G0SEG4 G0SEG4_CHATD 270 921 DBREF 6RM8 C 211 254 UNP G0SFN3 G0SFN3_CHATD 211 254 SEQADV 6RM8 GLY A 262 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM8 PRO A 263 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM8 LEU A 264 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM8 GLY A 265 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM8 SER A 266 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM8 PRO A 267 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM8 GLU A 268 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM8 PHE A 269 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM8 GLY C 208 UNP G0SFN3 EXPRESSION TAG SEQADV 6RM8 PRO C 209 UNP G0SFN3 EXPRESSION TAG SEQADV 6RM8 MET C 210 UNP G0SFN3 EXPRESSION TAG SEQRES 1 A 660 GLY PRO LEU GLY SER PRO GLU PHE THR PRO GLU GLN ARG SEQRES 2 A 660 LEU LEU LYS GLN LYS ILE GLU GLU ALA GLU ARG ALA GLN SEQRES 3 A 660 ARG THR ILE GLN GLU VAL ARG LYS SER LEU PRO VAL TYR SEQRES 4 A 660 ALA TYR ARG ASP ALA PHE LEU ASP ALA VAL LYS GLU TYR SEQRES 5 A 660 GLN VAL LEU ILE LEU VAL GLY GLU THR GLY SER GLY LYS SEQRES 6 A 660 THR THR GLN ILE PRO GLN TYR LEU HIS GLU ALA GLY TYR SEQRES 7 A 660 THR LYS GLY ASN ARG LYS ILE ALA CYS THR GLN PRO ARG SEQRES 8 A 660 ARG VAL ALA ALA MET SER VAL ALA ALA ARG VAL ALA ASP SEQRES 9 A 660 GLU MET GLY VAL ARG LEU GLY HIS GLU VAL GLY TYR SER SEQRES 10 A 660 ILE ARG PHE GLU ASP CYS THR SER GLU LYS THR ILE LEU SEQRES 11 A 660 LYS TYR MET THR ASP GLY MET LEU LEU ARG GLU MET VAL SEQRES 12 A 660 THR SER PRO ASP LEU ALA ASP TYR SER CYS ILE MET ILE SEQRES 13 A 660 ASP GLU ALA HIS GLU ARG THR VAL HIS THR ASP ILE LEU SEQRES 14 A 660 LEU ALA LEU ILE LYS ASP LEU THR ARG ALA ARG PRO GLU SEQRES 15 A 660 LEU ARG LEU ILE ILE SER SER ALA THR LEU ASN ALA GLU SEQRES 16 A 660 LYS PHE SER ALA TYR PHE ASP ASP ALA PRO ILE PHE ASN SEQRES 17 A 660 VAL PRO GLY ARG VAL HIS PRO VAL GLU VAL TYR TYR THR SEQRES 18 A 660 SER ALA PRO GLU SER ASN TYR LEU GLU ALA ALA LEU VAL SEQRES 19 A 660 THR VAL PHE GLN ILE HIS ALA THR GLN PRO GLU GLY ASP SEQRES 20 A 660 ILE LEU VAL PHE LEU THR GLY GLN GLU GLU ILE GLU ARG SEQRES 21 A 660 ALA CYS GLU ARG VAL GLU GLU ILE ARG ARG LYS LEU GLY SEQRES 22 A 660 LYS ARG VAL PRO GLU ILE ILE ALA LEU PRO ILE TYR SER SEQRES 23 A 660 ASN MET PRO SER GLU MET GLN ALA LYS ILE PHE GLU PRO SEQRES 24 A 660 THR PRO PRO GLY ALA ARG LYS VAL VAL PHE SER THR ASN SEQRES 25 A 660 ILE ALA GLU THR SER LEU THR ILE ASP GLY ILE VAL TYR SEQRES 26 A 660 VAL ILE ASP SER GLY TYR VAL LYS GLU ASN THR PHE SER SEQRES 27 A 660 PRO VAL GLY THR THR GLY GLN SER THR LEU ALA VAL VAL SEQRES 28 A 660 PRO CYS SER ARG ALA ALA ALA ASN GLN ARG MET GLY ARG SEQRES 29 A 660 ALA GLY ARG VAL LYS PRO GLY LYS CYS PHE ARG LEU TYR SEQRES 30 A 660 THR LYS TYR ALA TYR LEU SER GLU MET ASP GLU SER PRO SEQRES 31 A 660 THR PRO GLU ILE GLN ARG THR SER LEU SER SER VAL VAL SEQRES 32 A 660 LEU GLN LEU LYS ALA LEU GLY ILE ASP ASP LEU LEU GLY SEQRES 33 A 660 PHE ASP PHE LEU ASP PRO PRO PRO THR GLU LEU LEU ILE SEQRES 34 A 660 LYS SER LEU ASN MET LEU TYR ALA LEU GLY ALA LEU ASN SEQRES 35 A 660 SER ALA GLY GLN LEU THR ARG VAL GLY ARG GLN MET GLY SEQRES 36 A 660 GLU PHE PRO THR GLU PRO MET LEU ALA LYS ALA LEU ILE SEQRES 37 A 660 ALA ALA THR GLN GLU GLY CYS VAL SER GLU VAL LEU THR SEQRES 38 A 660 ILE VAL SER MET LEU GLY GLU VAL GLY THR LEU PHE PHE SEQRES 39 A 660 ARG PRO LYS ASP LYS LYS VAL HIS ALA ASP SER ALA ARG SEQRES 40 A 660 ALA ARG PHE THR VAL ARG ASP GLY GLY ASP HIS LEU THR SEQRES 41 A 660 LEU LEU ASN ILE TYR ASN GLN TRP VAL GLU ALA GLU TYR SEQRES 42 A 660 SER PRO ILE TRP ALA ARG GLU ASN PHE LEU ALA GLN ARG SEQRES 43 A 660 SER LEU THR ARG ALA ARG ASP VAL ARG ASP GLN LEU ALA SEQRES 44 A 660 LYS LEU CYS ASP ARG ILE LEU ASP GLY SER GLU ALA SER SEQRES 45 A 660 CYS GLY GLY VAL ASN ASN PRO THR PRO ILE LEU ARG ALA SEQRES 46 A 660 LEU THR ALA ALA PHE PHE LEU ASN ALA ALA ARG LEU ASN SEQRES 47 A 660 ARG ALA GLY ASP GLY TYR ARG THR LEU LYS ASN ASN ILE SEQRES 48 A 660 THR VAL TYR VAL HIS PRO SER SER VAL VAL ARG GLY MET SEQRES 49 A 660 ASP PRO PRO PRO LYS VAL ILE ILE TYR HIS GLU LEU VAL SEQRES 50 A 660 VAL THR SER LYS GLU TYR VAL ARG SER VAL ILE PRO VAL SEQRES 51 A 660 GLU PRO ARG TRP LEU SER GLU PHE GLY ALA SEQRES 1 C 47 GLY PRO MET VAL ASP ASP PHE GLY GLU ASN LEU LEU ARG SEQRES 2 C 47 SER PHE GLY TRP ASP GLY LYS MET ARG GLY LYS VAL LYS SEQRES 3 C 47 GLU VAL LYS ARG TYR ALA ASN LEU ALA GLY LEU GLY ALA SEQRES 4 C 47 ARG ASN VAL LYS GLU ALA GLU ASP HET ADP A1001 27 HET MG A1002 1 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 A1007 5 HET SO4 A1008 5 HET SO4 A1009 5 HET SO4 A1010 5 HET SO4 A1011 5 HET CL A1012 1 HET CL A1013 1 HET CL A1014 1 HET BTB A1015 14 HET PEG A1016 7 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN BTB BIS-TRIS BUFFER FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ FORMUL 5 SO4 9(O4 S 2-) FORMUL 14 CL 3(CL 1-) FORMUL 17 BTB C8 H19 N O5 FORMUL 18 PEG C4 H10 O3 FORMUL 19 HOH *190(H2 O) HELIX 1 AA1 GLU A 272 SER A 296 1 25 HELIX 2 AA2 TYR A 302 TYR A 313 1 12 HELIX 3 AA3 GLY A 325 ALA A 337 1 13 HELIX 4 AA4 ARG A 352 MET A 367 1 16 HELIX 5 AA5 ASP A 396 SER A 406 1 11 HELIX 6 AA6 GLU A 419 ARG A 423 5 5 HELIX 7 AA7 THR A 424 ARG A 441 1 18 HELIX 8 AA8 ALA A 455 PHE A 462 1 8 HELIX 9 AA9 ASN A 488 GLN A 504 1 17 HELIX 10 AB1 GLY A 515 LEU A 533 1 19 HELIX 11 AB2 PRO A 550 PHE A 558 1 9 HELIX 12 AB3 ASN A 573 SER A 578 1 6 HELIX 13 AB4 SER A 615 ARG A 625 1 11 HELIX 14 AB5 THR A 639 GLU A 646 1 8 HELIX 15 AB6 PRO A 653 ARG A 657 5 5 HELIX 16 AB7 LEU A 660 LEU A 670 1 11 HELIX 17 AB8 PRO A 685 LEU A 699 1 15 HELIX 18 AB9 THR A 709 PHE A 718 1 10 HELIX 19 AC1 GLU A 721 GLY A 735 1 15 HELIX 20 AC2 CYS A 736 GLY A 748 1 13 HELIX 21 AC3 LYS A 760 PHE A 771 1 12 HELIX 22 AC4 GLY A 776 ALA A 792 1 17 HELIX 23 AC5 SER A 795 ASN A 802 1 8 HELIX 24 AC6 ALA A 805 LEU A 827 1 23 HELIX 25 AC7 GLY A 835 ASN A 838 5 4 HELIX 26 AC8 ASN A 839 PHE A 852 1 14 HELIX 27 AC9 SER A 880 MET A 885 5 6 HELIX 28 AD1 GLU A 912 GLY A 920 1 9 HELIX 29 AD2 MET C 210 SER C 221 1 12 HELIX 30 AD3 ASN C 248 ALA C 252 5 5 SHEET 1 AA1 8 GLU A 382 CYS A 384 0 SHEET 2 AA1 8 VAL A 375 ILE A 379 -1 N ILE A 379 O GLU A 382 SHEET 3 AA1 8 LEU A 391 THR A 395 1 O TYR A 393 N GLY A 376 SHEET 4 AA1 8 LYS A 345 GLN A 350 1 N GLN A 350 O MET A 394 SHEET 5 AA1 8 TYR A 412 ILE A 417 1 O MET A 416 N ALA A 347 SHEET 6 AA1 8 ARG A 445 SER A 450 1 O ILE A 447 N ILE A 415 SHEET 7 AA1 8 VAL A 315 GLY A 320 1 N LEU A 316 O ILE A 448 SHEET 8 AA1 8 ILE A 467 VAL A 470 1 O PHE A 468 N ILE A 317 SHEET 1 AA2 6 VAL A 477 TYR A 481 0 SHEET 2 AA2 6 GLY A 632 ARG A 636 1 O CYS A 634 N TYR A 480 SHEET 3 AA2 6 ILE A 584 ASP A 589 1 N VAL A 587 O PHE A 635 SHEET 4 AA2 6 ASP A 508 PHE A 512 1 N PHE A 512 O ILE A 588 SHEET 5 AA2 6 ARG A 566 SER A 571 1 O VAL A 569 N VAL A 511 SHEET 6 AA2 6 ILE A 540 ILE A 545 1 N ILE A 541 O VAL A 568 SHEET 1 AA3 2 TYR A 592 SER A 599 0 SHEET 2 AA3 2 GLN A 606 PRO A 613 -1 O ALA A 610 N GLU A 595 SHEET 1 AA4 6 ALA A 855 LEU A 858 0 SHEET 2 AA4 6 TYR A 865 THR A 867 -1 O ARG A 866 N ARG A 857 SHEET 3 AA4 6 THR A 873 VAL A 876 -1 O VAL A 874 N TYR A 865 SHEET 4 AA4 6 GLU A 903 PRO A 910 1 O VAL A 905 N TYR A 875 SHEET 5 AA4 6 VAL A 891 VAL A 899 -1 N VAL A 898 O TYR A 904 SHEET 6 AA4 6 ALA A 855 LEU A 858 -1 N ALA A 856 O ILE A 892 LINK OG1 THR A 327 MG MG A1002 1555 1555 2.00 LINK O3B ADP A1001 MG MG A1002 1555 1555 2.23 LINK MG MG A1002 O HOH A1111 1555 1555 2.17 LINK MG MG A1002 O HOH A1131 1555 1555 2.05 LINK MG MG A1002 O HOH A1151 1555 1555 2.14 LINK MG MG A1002 O HOH A1185 1555 1555 2.13 SITE 1 AC1 17 GLY A 323 SER A 324 GLY A 325 LYS A 326 SITE 2 AC1 17 THR A 327 THR A 328 SER A 358 ARG A 362 SITE 3 AC1 17 PHE A 558 THR A 580 ASP A 582 ARG A 628 SITE 4 AC1 17 MG A1002 HOH A1111 HOH A1119 HOH A1131 SITE 5 AC1 17 HOH A1161 SITE 1 AC2 7 THR A 327 GLU A 419 ADP A1001 HOH A1111 SITE 2 AC2 7 HOH A1131 HOH A1151 HOH A1185 SITE 1 AC3 8 GLY A 515 GLN A 516 TYR A 546 SER A 547 SITE 2 AC3 8 LYS A 594 HOH A1101 HOH A1133 HOH A1168 SITE 1 AC4 5 GLY A 751 ARG A 768 SER A 879 HOH A1102 SITE 2 AC4 5 HOH A1109 SITE 1 AC5 6 ARG A 370 HIS A 373 ARG A 530 HOH A1103 SITE 2 AC5 6 HOH A1106 HOH A1195 SITE 1 AC6 7 ARG A 353 MET A 357 PHE A 381 GLU A 382 SITE 2 AC6 7 ARG A 811 HOH A1104 HOH A1107 SITE 1 AC7 3 ASP A 778 SER A 879 HOH A1105 SITE 1 AC8 3 THR A 709 ARG A 710 HOH A1162 SITE 1 AC9 3 ASN A 859 ARG A 860 ARG A 866 SITE 1 AD1 5 LYS A 760 HIS A 763 PHE A 803 ARG A 866 SITE 2 AD1 5 THR A 873 SITE 1 AD2 4 ARG A 380 ASN A 548 GLU A 749 ARG A 811 SITE 1 AD3 3 PRO A 351 ARG A 353 CL A1013 SITE 1 AD4 2 ARG A 352 CL A1012 SITE 1 AD5 2 ASP A 673 ASP A 674 SITE 1 AD6 10 THR A 732 GLN A 733 GLY A 735 ASP A 828 SITE 2 AD6 10 ALA A 832 HOH A1165 HOH A1211 ASP C 213 SITE 3 AD6 10 GLU C 216 ASN C 217 SITE 1 AD7 4 ARG A 380 THR A 395 GLY A 397 ARG A 401 CRYST1 64.340 75.460 154.440 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015542 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006475 0.00000