HEADER HYDROLASE 06-MAY-19 6RM9 TITLE CRYSTAL STRUCTURE OF THE DEAH-BOX ATPASE PRP2 IN COMPLEX WITH SPP2 AND TITLE 2 ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MRNA SPLICING FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PUTATIVE PRE-MRNA SPLICING PROTEIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 3 1495; SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 GENE: CTHT_0063660; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 10 1495; SOURCE 11 ORGANISM_TAXID: 759272; SOURCE 12 GENE: CTHT_0071470; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRP2, DEAH-BOX ATPASE, G-PATCH, SPLICEOSOME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.HAMANN,P.NEUMANN,R.FICNER REVDAT 3 24-JAN-24 6RM9 1 REMARK LINK REVDAT 2 19-FEB-20 6RM9 1 JRNL REVDAT 1 05-FEB-20 6RM9 0 JRNL AUTH F.HAMANN,A.SCHMITT,F.FAVRETTO,R.HOFELE,P.NEUMANN,S.XIANG, JRNL AUTH 2 H.URLAUB,M.ZWECKSTETTER,R.FICNER JRNL TITL STRUCTURAL ANALYSIS OF THE INTRINSICALLY DISORDERED SPLICING JRNL TITL 2 FACTOR SPP2 AND ITS BINDING TO THE DEAH-BOX ATPASE PRP2. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 2948 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 31974312 JRNL DOI 10.1073/PNAS.1907960117 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 65546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.7362 - 5.2601 0.99 2904 154 0.1851 0.2216 REMARK 3 2 5.2601 - 4.1753 0.99 2779 146 0.1557 0.1525 REMARK 3 3 4.1753 - 3.6475 0.99 2734 144 0.1594 0.1519 REMARK 3 4 3.6475 - 3.3141 0.99 2737 144 0.1787 0.1872 REMARK 3 5 3.3141 - 3.0765 1.00 2734 144 0.1934 0.1857 REMARK 3 6 3.0765 - 2.8951 1.00 2709 143 0.2041 0.2192 REMARK 3 7 2.8951 - 2.7501 1.00 2694 141 0.1972 0.2013 REMARK 3 8 2.7501 - 2.6304 1.00 2714 142 0.2043 0.2228 REMARK 3 9 2.6304 - 2.5292 1.00 2712 143 0.2035 0.2008 REMARK 3 10 2.5292 - 2.4419 1.00 2683 141 0.2102 0.2188 REMARK 3 11 2.4419 - 2.3655 1.00 2697 142 0.2163 0.2710 REMARK 3 12 2.3655 - 2.2979 0.99 2706 143 0.2310 0.3043 REMARK 3 13 2.2979 - 2.2374 1.00 2699 142 0.2426 0.2600 REMARK 3 14 2.2374 - 2.1828 1.00 2682 141 0.2452 0.3019 REMARK 3 15 2.1828 - 2.1332 1.00 2673 140 0.2472 0.2685 REMARK 3 16 2.1332 - 2.0878 1.00 2681 142 0.2481 0.2952 REMARK 3 17 2.0878 - 2.0460 1.00 2682 141 0.2641 0.3355 REMARK 3 18 2.0460 - 2.0074 1.00 2674 141 0.2726 0.2937 REMARK 3 19 2.0074 - 1.9716 1.00 2712 142 0.2834 0.3106 REMARK 3 20 1.9716 - 1.9381 1.00 2627 139 0.3096 0.3638 REMARK 3 21 1.9381 - 1.9069 1.00 2699 142 0.3346 0.3566 REMARK 3 22 1.9069 - 1.8775 1.00 2667 140 0.3377 0.3384 REMARK 3 23 1.8775 - 1.8499 0.99 2669 141 0.3493 0.3602 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2610 2.3587 2.1452 REMARK 3 T TENSOR REMARK 3 T11: 0.3963 T22: 0.4565 REMARK 3 T33: 0.3001 T12: 0.0950 REMARK 3 T13: -0.0229 T23: -0.0938 REMARK 3 L TENSOR REMARK 3 L11: 0.8063 L22: 1.6465 REMARK 3 L33: 1.2168 L12: 0.0396 REMARK 3 L13: 0.2969 L23: -0.7811 REMARK 3 S TENSOR REMARK 3 S11: -0.0911 S12: -0.2124 S13: 0.0183 REMARK 3 S21: 0.2753 S22: 0.0643 S23: 0.0074 REMARK 3 S31: -0.3640 S32: -0.4256 S33: 0.0325 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 476 THROUGH 720 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9923 1.0513 -16.8378 REMARK 3 T TENSOR REMARK 3 T11: 0.2391 T22: 0.1823 REMARK 3 T33: 0.2106 T12: 0.0018 REMARK 3 T13: 0.0052 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 1.8615 L22: 0.9708 REMARK 3 L33: 1.1587 L12: 0.0927 REMARK 3 L13: 0.4892 L23: -0.0911 REMARK 3 S TENSOR REMARK 3 S11: -0.0967 S12: -0.0583 S13: 0.0562 REMARK 3 S21: -0.0680 S22: 0.0621 S23: -0.1008 REMARK 3 S31: -0.2069 S32: -0.0100 S33: 0.0429 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 721 THROUGH 920 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9752 -13.6750 -33.1280 REMARK 3 T TENSOR REMARK 3 T11: 0.2895 T22: 0.3275 REMARK 3 T33: 0.3019 T12: -0.0109 REMARK 3 T13: -0.0192 T23: -0.0939 REMARK 3 L TENSOR REMARK 3 L11: 3.0179 L22: 2.5110 REMARK 3 L33: 2.6629 L12: 0.1230 REMARK 3 L13: 0.1767 L23: -0.2847 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: 0.4809 S13: -0.2436 REMARK 3 S21: -0.2926 S22: 0.1007 S23: -0.2167 REMARK 3 S31: 0.0300 S32: 0.1728 S33: -0.0124 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 208 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6093 17.3477 -35.4814 REMARK 3 T TENSOR REMARK 3 T11: 0.6698 T22: 0.5089 REMARK 3 T33: 0.5688 T12: 0.1815 REMARK 3 T13: -0.1082 T23: 0.0901 REMARK 3 L TENSOR REMARK 3 L11: 6.2851 L22: 8.7430 REMARK 3 L33: 5.6188 L12: 0.3642 REMARK 3 L13: -0.6874 L23: 4.6067 REMARK 3 S TENSOR REMARK 3 S11: -0.0535 S12: 1.0949 S13: -0.1675 REMARK 3 S21: -0.7831 S22: -0.1359 S23: 0.0275 REMARK 3 S31: -0.7062 S32: 0.3544 S33: 0.1049 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 223 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9940 24.7582 -30.0742 REMARK 3 T TENSOR REMARK 3 T11: 0.6510 T22: 0.3159 REMARK 3 T33: 0.7877 T12: 0.0058 REMARK 3 T13: -0.2001 T23: 0.0791 REMARK 3 L TENSOR REMARK 3 L11: 0.4625 L22: 1.6258 REMARK 3 L33: 2.1662 L12: 0.7734 REMARK 3 L13: 0.3460 L23: -0.2195 REMARK 3 S TENSOR REMARK 3 S11: -0.2333 S12: -0.0708 S13: 1.2125 REMARK 3 S21: 0.1333 S22: 0.0375 S23: 0.2059 REMARK 3 S31: -0.5754 S32: -0.0323 S33: 0.1042 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 233 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0651 11.3262 -31.2048 REMARK 3 T TENSOR REMARK 3 T11: 0.9882 T22: 0.8312 REMARK 3 T33: 1.2845 T12: 0.2564 REMARK 3 T13: 0.3120 T23: 0.3209 REMARK 3 L TENSOR REMARK 3 L11: 0.7201 L22: 1.3557 REMARK 3 L33: 0.4343 L12: -0.8912 REMARK 3 L13: -0.5060 L23: 0.7633 REMARK 3 S TENSOR REMARK 3 S11: -0.1979 S12: -0.1179 S13: -0.2842 REMARK 3 S21: -0.0551 S22: -0.4155 S23: 0.2153 REMARK 3 S31: 0.1290 S32: 0.0978 S33: 0.3588 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 238 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0459 2.7749 -28.4931 REMARK 3 T TENSOR REMARK 3 T11: 0.6508 T22: 0.7318 REMARK 3 T33: 0.6674 T12: -0.0696 REMARK 3 T13: -0.0013 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 3.3456 L22: 7.4535 REMARK 3 L33: 4.7248 L12: -1.4194 REMARK 3 L13: 2.6437 L23: 3.0998 REMARK 3 S TENSOR REMARK 3 S11: -0.1409 S12: 0.6198 S13: -0.2627 REMARK 3 S21: -0.2911 S22: -0.0118 S23: 0.3308 REMARK 3 S31: -0.1436 S32: 0.1998 S33: 0.1933 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65564 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 68.689 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.552 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.53 REMARK 200 R MERGE FOR SHELL (I) : 1.09900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FA5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 5.5, 400 MM REMARK 280 AMMONIUM SULFATE, 23% (W/V) PEG3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.44500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.44500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.92500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 262 REMARK 465 PRO A 263 REMARK 465 LEU A 264 REMARK 465 GLY A 265 REMARK 465 ALA A 921 REMARK 465 ASN C 248 REMARK 465 VAL C 249 REMARK 465 LYS C 250 REMARK 465 GLU C 251 REMARK 465 ALA C 252 REMARK 465 GLU C 253 REMARK 465 ASP C 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 453 CG CD1 CD2 REMARK 470 LYS A 758 CG CD CE NZ REMARK 470 ASP A 759 CG OD1 OD2 REMARK 470 LYS A 869 CG CD CE NZ REMARK 470 ASP A 886 CG OD1 OD2 REMARK 470 LYS C 231 CG CD CE NZ REMARK 470 LYS C 233 CG CD CE NZ REMARK 470 GLU C 234 CG CD OE1 OE2 REMARK 470 ARG C 237 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 247 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 282 CD REMARK 480 GLU A 284 CD REMARK 480 GLU A 292 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 373 -107.97 -95.26 REMARK 500 PHE A 381 -4.37 74.55 REMARK 500 CSO A 384 65.08 -107.00 REMARK 500 PHE A 462 35.10 -91.12 REMARK 500 GLU A 506 130.08 -33.03 REMARK 500 ASN A 573 5.47 -64.64 REMARK 500 THR A 577 -18.16 -148.50 REMARK 500 ARG A 657 17.74 -146.57 REMARK 500 ARG A 657 18.68 -147.04 REMARK 500 LYS A 760 61.72 -114.75 REMARK 500 LEU A 827 -134.61 -103.66 REMARK 500 THR A 900 -123.94 -123.23 REMARK 500 SER A 907 91.60 65.42 REMARK 500 SER A 907 91.60 66.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 327 OG1 REMARK 620 2 ADP A1001 O2B 82.5 REMARK 620 3 HOH A1142 O 166.3 90.5 REMARK 620 4 HOH A1148 O 95.5 87.3 95.9 REMARK 620 5 HOH A1180 O 82.5 92.7 86.1 178.0 REMARK 620 6 HOH A1228 O 97.8 175.8 90.0 88.5 91.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 301 DBREF 6RM9 A 270 921 UNP G0SEG4 G0SEG4_CHATD 270 921 DBREF 6RM9 C 211 254 UNP G0SFN3 G0SFN3_CHATD 211 254 SEQADV 6RM9 GLY A 262 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM9 PRO A 263 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM9 LEU A 264 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM9 GLY A 265 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM9 SER A 266 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM9 PRO A 267 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM9 GLU A 268 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM9 PHE A 269 UNP G0SEG4 EXPRESSION TAG SEQADV 6RM9 GLY C 208 UNP G0SFN3 EXPRESSION TAG SEQADV 6RM9 PRO C 209 UNP G0SFN3 EXPRESSION TAG SEQADV 6RM9 MET C 210 UNP G0SFN3 EXPRESSION TAG SEQRES 1 A 660 GLY PRO LEU GLY SER PRO GLU PHE THR PRO GLU GLN ARG SEQRES 2 A 660 LEU LEU LYS GLN LYS ILE GLU GLU ALA GLU ARG ALA GLN SEQRES 3 A 660 ARG THR ILE GLN GLU VAL ARG LYS SER LEU PRO VAL TYR SEQRES 4 A 660 ALA TYR ARG ASP ALA PHE LEU ASP ALA VAL LYS GLU TYR SEQRES 5 A 660 GLN VAL LEU ILE LEU VAL GLY GLU THR GLY SER GLY LYS SEQRES 6 A 660 THR THR GLN ILE PRO GLN TYR LEU HIS GLU ALA GLY TYR SEQRES 7 A 660 THR LYS GLY ASN ARG LYS ILE ALA CYS THR GLN PRO ARG SEQRES 8 A 660 ARG VAL ALA ALA MET SER VAL ALA ALA ARG VAL ALA ASP SEQRES 9 A 660 GLU MET GLY VAL ARG LEU GLY HIS GLU VAL GLY TYR SER SEQRES 10 A 660 ILE ARG PHE GLU ASP CSO THR SER GLU LYS THR ILE LEU SEQRES 11 A 660 LYS TYR MET THR ASP GLY MET LEU LEU ARG GLU MET VAL SEQRES 12 A 660 THR SER PRO ASP LEU ALA ASP TYR SER CYS ILE MET ILE SEQRES 13 A 660 ASP GLU ALA HIS GLU ARG THR VAL HIS THR ASP ILE LEU SEQRES 14 A 660 LEU ALA LEU ILE LYS ASP LEU THR ARG ALA ARG PRO GLU SEQRES 15 A 660 LEU ARG LEU ILE ILE SER SER ALA THR LEU ASN ALA GLU SEQRES 16 A 660 LYS PHE SER ALA TYR PHE ASP ASP ALA PRO ILE PHE ASN SEQRES 17 A 660 VAL PRO GLY ARG VAL HIS PRO VAL GLU VAL TYR TYR THR SEQRES 18 A 660 SER ALA PRO GLU SER ASN TYR LEU GLU ALA ALA LEU VAL SEQRES 19 A 660 THR VAL PHE GLN ILE HIS ALA THR GLN PRO GLU GLY ASP SEQRES 20 A 660 ILE LEU VAL PHE LEU THR GLY GLN GLU GLU ILE GLU ARG SEQRES 21 A 660 ALA CYS GLU ARG VAL GLU GLU ILE ARG ARG LYS LEU GLY SEQRES 22 A 660 LYS ARG VAL PRO GLU ILE ILE ALA LEU PRO ILE TYR SER SEQRES 23 A 660 ASN MET PRO SER GLU MET GLN ALA LYS ILE PHE GLU PRO SEQRES 24 A 660 THR PRO PRO GLY ALA ARG LYS VAL VAL PHE SER THR ASN SEQRES 25 A 660 ILE ALA GLU THR SER LEU THR ILE ASP GLY ILE VAL TYR SEQRES 26 A 660 VAL ILE ASP SER GLY TYR VAL LYS GLU ASN THR PHE SER SEQRES 27 A 660 PRO VAL GLY THR THR GLY GLN SER THR LEU ALA VAL VAL SEQRES 28 A 660 PRO CYS SER ARG ALA ALA ALA ASN GLN ARG MET GLY ARG SEQRES 29 A 660 ALA GLY ARG VAL LYS PRO GLY LYS CYS PHE ARG LEU TYR SEQRES 30 A 660 THR LYS TYR ALA TYR LEU SER GLU MET ASP GLU SER PRO SEQRES 31 A 660 THR PRO GLU ILE GLN ARG THR SER LEU SER SER VAL VAL SEQRES 32 A 660 LEU GLN LEU LYS ALA LEU GLY ILE ASP ASP LEU LEU GLY SEQRES 33 A 660 PHE ASP PHE LEU ASP PRO PRO PRO THR GLU LEU LEU ILE SEQRES 34 A 660 LYS SER LEU ASN MET LEU TYR ALA LEU GLY ALA LEU ASN SEQRES 35 A 660 SER ALA GLY GLN LEU THR ARG VAL GLY ARG GLN MET GLY SEQRES 36 A 660 GLU PHE PRO THR GLU PRO MET LEU ALA LYS ALA LEU ILE SEQRES 37 A 660 ALA ALA THR GLN GLU GLY CYS VAL SER GLU VAL LEU THR SEQRES 38 A 660 ILE VAL SER MET LEU GLY GLU VAL GLY THR LEU PHE PHE SEQRES 39 A 660 ARG PRO LYS ASP LYS LYS VAL HIS ALA ASP SER ALA ARG SEQRES 40 A 660 ALA ARG PHE THR VAL ARG ASP GLY GLY ASP HIS LEU THR SEQRES 41 A 660 LEU LEU ASN ILE TYR ASN GLN TRP VAL GLU ALA GLU TYR SEQRES 42 A 660 SER PRO ILE TRP ALA ARG GLU ASN PHE LEU ALA GLN ARG SEQRES 43 A 660 SER LEU THR ARG ALA ARG ASP VAL ARG ASP GLN LEU ALA SEQRES 44 A 660 LYS LEU CYS ASP ARG ILE LEU ASP GLY SER GLU ALA SER SEQRES 45 A 660 CYS GLY GLY VAL ASN ASN PRO THR PRO ILE LEU ARG ALA SEQRES 46 A 660 LEU THR ALA ALA PHE PHE LEU ASN ALA ALA ARG LEU ASN SEQRES 47 A 660 ARG ALA GLY ASP GLY TYR ARG THR LEU LYS ASN ASN ILE SEQRES 48 A 660 THR VAL TYR VAL HIS PRO SER SER VAL VAL ARG GLY MET SEQRES 49 A 660 ASP PRO PRO PRO LYS VAL ILE ILE TYR HIS GLU LEU VAL SEQRES 50 A 660 VAL THR SER LYS GLU TYR VAL ARG SER VAL ILE PRO VAL SEQRES 51 A 660 GLU PRO ARG TRP LEU SER GLU PHE GLY ALA SEQRES 1 C 47 GLY PRO MET VAL ASP ASP PHE GLY GLU ASN LEU LEU ARG SEQRES 2 C 47 SER PHE GLY TRP ASP GLY LYS MET ARG GLY LYS VAL LYS SEQRES 3 C 47 GLU VAL LYS ARG TYR ALA ASN LEU ALA GLY LEU GLY ALA SEQRES 4 C 47 ARG ASN VAL LYS GLU ALA GLU ASP MODRES 6RM9 CSO A 384 CYS MODIFIED RESIDUE HET CSO A 384 7 HET ADP A1001 27 HET MG A1002 1 HET ACT A1003 4 HET ACT A1004 4 HET GOL A1005 12 HET GOL A1006 6 HET PEG C 301 7 HETNAM CSO S-HYDROXYCYSTEINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 PEG C4 H10 O3 FORMUL 10 HOH *319(H2 O) HELIX 1 AA1 GLU A 272 LEU A 297 1 26 HELIX 2 AA2 PRO A 298 ALA A 301 5 4 HELIX 3 AA3 TYR A 302 TYR A 313 1 12 HELIX 4 AA4 GLY A 325 ALA A 337 1 13 HELIX 5 AA5 ARG A 352 GLY A 368 1 17 HELIX 6 AA6 ASP A 396 SER A 406 1 11 HELIX 7 AA7 GLU A 419 ARG A 423 5 5 HELIX 8 AA8 THR A 424 ARG A 441 1 18 HELIX 9 AA9 ALA A 455 PHE A 462 1 8 HELIX 10 AB1 ASN A 488 GLN A 504 1 17 HELIX 11 AB2 GLY A 515 LEU A 533 1 19 HELIX 12 AB3 PRO A 550 GLU A 559 1 10 HELIX 13 AB4 ASN A 573 SER A 578 1 6 HELIX 14 AB5 SER A 615 ARG A 625 1 11 HELIX 15 AB6 ALA A 626 ARG A 628 5 3 HELIX 16 AB7 THR A 639 GLU A 646 1 8 HELIX 17 AB8 PRO A 653 ARG A 657 5 5 HELIX 18 AB9 LEU A 660 LEU A 670 1 11 HELIX 19 AC1 PRO A 685 LEU A 699 1 15 HELIX 20 AC2 THR A 709 GLY A 716 1 8 HELIX 21 AC3 GLU A 721 GLY A 735 1 15 HELIX 22 AC4 CYS A 736 GLY A 748 1 13 HELIX 23 AC5 LYS A 760 ARG A 770 1 11 HELIX 24 AC6 GLY A 776 ALA A 792 1 17 HELIX 25 AC7 SER A 795 ASN A 802 1 8 HELIX 26 AC8 ALA A 805 LEU A 827 1 23 HELIX 27 AC9 GLY A 835 ASN A 838 5 4 HELIX 28 AD1 ASN A 839 PHE A 852 1 14 HELIX 29 AD2 SER A 880 MET A 885 5 6 HELIX 30 AD3 GLU A 912 GLY A 920 1 9 HELIX 31 AD4 MET C 210 ASP C 212 5 3 HELIX 32 AD5 ASP C 213 PHE C 222 1 10 SHEET 1 AA1 8 GLU A 382 CSO A 384 0 SHEET 2 AA1 8 VAL A 375 ILE A 379 -1 N ILE A 379 O GLU A 382 SHEET 3 AA1 8 LEU A 391 THR A 395 1 O LEU A 391 N GLY A 376 SHEET 4 AA1 8 LYS A 345 GLN A 350 1 N ILE A 346 O LYS A 392 SHEET 5 AA1 8 TYR A 412 ILE A 417 1 O MET A 416 N ALA A 347 SHEET 6 AA1 8 ARG A 445 SER A 450 1 O ARG A 445 N ILE A 415 SHEET 7 AA1 8 VAL A 315 GLY A 320 1 N LEU A 318 O SER A 450 SHEET 8 AA1 8 ILE A 467 VAL A 470 1 O PHE A 468 N ILE A 317 SHEET 1 AA2 6 VAL A 477 TYR A 481 0 SHEET 2 AA2 6 GLY A 632 ARG A 636 1 O ARG A 636 N TYR A 480 SHEET 3 AA2 6 ILE A 584 ASP A 589 1 N VAL A 587 O PHE A 635 SHEET 4 AA2 6 ASP A 508 PHE A 512 1 N PHE A 512 O ILE A 588 SHEET 5 AA2 6 ARG A 566 SER A 571 1 O VAL A 569 N VAL A 511 SHEET 6 AA2 6 ILE A 540 ILE A 545 1 N ILE A 541 O VAL A 568 SHEET 1 AA3 2 TYR A 592 SER A 599 0 SHEET 2 AA3 2 GLN A 606 PRO A 613 -1 O GLN A 606 N SER A 599 SHEET 1 AA4 6 ALA A 855 LEU A 858 0 SHEET 2 AA4 6 TYR A 865 THR A 867 -1 O ARG A 866 N ARG A 857 SHEET 3 AA4 6 THR A 873 VAL A 876 -1 O VAL A 874 N TYR A 865 SHEET 4 AA4 6 GLU A 903 PRO A 910 1 O VAL A 905 N TYR A 875 SHEET 5 AA4 6 VAL A 891 VAL A 899 -1 N VAL A 898 O TYR A 904 SHEET 6 AA4 6 ALA A 855 LEU A 858 -1 N ALA A 856 O ILE A 892 LINK C ASP A 383 N CSO A 384 1555 1555 1.33 LINK C CSO A 384 N THR A 385 1555 1555 1.36 LINK OG1 THR A 327 MG MG A1002 1555 1555 2.06 LINK O2B ADP A1001 MG MG A1002 1555 1555 2.18 LINK MG MG A1002 O HOH A1142 1555 1555 2.18 LINK MG MG A1002 O HOH A1148 1555 1555 1.93 LINK MG MG A1002 O HOH A1180 1555 1555 2.12 LINK MG MG A1002 O HOH A1228 1555 1555 2.31 SITE 1 AC1 23 GLU A 321 THR A 322 GLY A 323 SER A 324 SITE 2 AC1 23 GLY A 325 LYS A 326 THR A 327 THR A 328 SITE 3 AC1 23 SER A 358 ARG A 362 PHE A 558 THR A 580 SITE 4 AC1 23 ASP A 582 ARG A 628 MG A1002 ACT A1003 SITE 5 AC1 23 HOH A1118 HOH A1142 HOH A1148 HOH A1156 SITE 6 AC1 23 HOH A1169 HOH A1213 HOH A1306 SITE 1 AC2 6 THR A 327 ADP A1001 HOH A1142 HOH A1148 SITE 2 AC2 6 HOH A1180 HOH A1228 SITE 1 AC3 6 SER A 358 ARG A 536 ALA A 555 PHE A 558 SITE 2 AC3 6 ADP A1001 HOH A1292 SITE 1 AC4 4 ARG A 380 THR A 720 HOH A1171 HOH A1229 SITE 1 AC5 7 PRO A 351 ARG A 352 ARG A 353 VAL A 354 SITE 2 AC5 7 SER A 547 ILE A 574 HOH A1150 SITE 1 AC6 3 ASN A 548 GLY A 748 HOH A1105 SITE 1 AC7 1 GLU C 216 CRYST1 65.850 77.420 148.890 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015186 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006716 0.00000