HEADER HYDROLASE 06-MAY-19 6RMB TITLE CRYSTAL STRUCTURE OF THE DEAH-BOX ATPASE PRP2 IN COMPLEX WITH SPP2 AND TITLE 2 ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MRNA SPLICING FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PUTATIVE PRE-MRNA SPLICING PROTEIN; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 3 1495; SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 GENE: CTHT_0063660; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 10 1495; SOURCE 11 ORGANISM_TAXID: 759272; SOURCE 12 GENE: CTHT_0071470; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRP2, DEAH-BOX ATPASE, G-PATCH, SPLICEOSOME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.HAMANN,P.NEUMANN,R.FICNER REVDAT 3 15-MAY-24 6RMB 1 REMARK LINK REVDAT 2 19-FEB-20 6RMB 1 JRNL REVDAT 1 05-FEB-20 6RMB 0 JRNL AUTH F.HAMANN,A.SCHMITT,F.FAVRETTO,R.HOFELE,P.NEUMANN,S.XIANG, JRNL AUTH 2 H.URLAUB,M.ZWECKSTETTER,R.FICNER JRNL TITL STRUCTURAL ANALYSIS OF THE INTRINSICALLY DISORDERED SPLICING JRNL TITL 2 FACTOR SPP2 AND ITS BINDING TO THE DEAH-BOX ATPASE PRP2. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 2948 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 31974312 JRNL DOI 10.1073/PNAS.1907960117 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 23930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.1817 - 5.1995 0.96 2542 134 0.1756 0.2022 REMARK 3 2 5.1995 - 4.1271 0.98 2535 134 0.1642 0.2181 REMARK 3 3 4.1271 - 3.6055 0.99 2546 134 0.1831 0.2366 REMARK 3 4 3.6055 - 3.2758 0.99 2535 133 0.2233 0.2797 REMARK 3 5 3.2758 - 3.0410 0.99 2525 133 0.2413 0.3117 REMARK 3 6 3.0410 - 2.8617 0.99 2529 134 0.2499 0.2926 REMARK 3 7 2.8617 - 2.7184 0.99 2502 131 0.2839 0.3631 REMARK 3 8 2.7184 - 2.6001 0.99 2490 131 0.3026 0.3452 REMARK 3 9 2.6001 - 2.5000 0.99 2529 133 0.3243 0.3805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 288 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8629 24.7754 28.9066 REMARK 3 T TENSOR REMARK 3 T11: 0.3160 T22: 0.3572 REMARK 3 T33: 0.7286 T12: 0.0083 REMARK 3 T13: -0.0828 T23: 0.0601 REMARK 3 L TENSOR REMARK 3 L11: 1.3321 L22: 1.4449 REMARK 3 L33: 1.6601 L12: 0.1237 REMARK 3 L13: 0.0608 L23: 0.2387 REMARK 3 S TENSOR REMARK 3 S11: -0.0919 S12: 0.0386 S13: 0.0639 REMARK 3 S21: -0.1636 S22: -0.0069 S23: 0.5801 REMARK 3 S31: -0.1712 S32: -0.1939 S33: 0.0659 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 476 THROUGH 652 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2079 4.0876 11.4692 REMARK 3 T TENSOR REMARK 3 T11: 0.4520 T22: 0.4780 REMARK 3 T33: 0.6873 T12: -0.0681 REMARK 3 T13: -0.1941 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.6041 L22: 1.5157 REMARK 3 L33: 1.3670 L12: 0.0806 REMARK 3 L13: 0.0570 L23: 0.2686 REMARK 3 S TENSOR REMARK 3 S11: -0.1209 S12: 0.1459 S13: -0.1319 REMARK 3 S21: -0.3140 S22: 0.0403 S23: 0.5556 REMARK 3 S31: 0.0775 S32: -0.3033 S33: 0.0670 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 653 THROUGH 919 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5110 9.6779 17.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.3114 T22: 0.3157 REMARK 3 T33: 0.3900 T12: -0.0460 REMARK 3 T13: -0.0198 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.8904 L22: 1.8083 REMARK 3 L33: 1.2933 L12: -0.2922 REMARK 3 L13: -0.4266 L23: 0.0408 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: 0.0644 S13: 0.1212 REMARK 3 S21: -0.2735 S22: 0.0723 S23: -0.0503 REMARK 3 S31: -0.0036 S32: 0.0394 S33: 0.0196 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 208 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8541 3.8758 44.5697 REMARK 3 T TENSOR REMARK 3 T11: 0.4984 T22: 0.4677 REMARK 3 T33: 0.5308 T12: 0.0568 REMARK 3 T13: -0.0591 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 6.0017 L22: 1.1621 REMARK 3 L33: 6.5056 L12: 0.5434 REMARK 3 L13: -2.8330 L23: -0.6031 REMARK 3 S TENSOR REMARK 3 S11: -0.5257 S12: -0.2730 S13: -0.7260 REMARK 3 S21: 0.2347 S22: 0.1138 S23: -0.0448 REMARK 3 S31: 0.0319 S32: 0.8281 S33: 0.4293 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 223 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9178 -0.9467 44.8509 REMARK 3 T TENSOR REMARK 3 T11: 0.7247 T22: 0.4746 REMARK 3 T33: 0.4095 T12: 0.1016 REMARK 3 T13: 0.0763 T23: 0.1235 REMARK 3 L TENSOR REMARK 3 L11: 1.1350 L22: 0.4007 REMARK 3 L33: 1.8868 L12: -0.6293 REMARK 3 L13: -1.4597 L23: 0.8304 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.3697 S13: -0.0595 REMARK 3 S21: 0.3404 S22: 0.0853 S23: 0.2867 REMARK 3 S31: 0.5998 S32: -0.7545 S33: -0.2617 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 236 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9185 -9.1505 15.2119 REMARK 3 T TENSOR REMARK 3 T11: 0.6447 T22: 0.4998 REMARK 3 T33: 0.6739 T12: -0.0097 REMARK 3 T13: 0.0053 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.3349 L22: 0.6808 REMARK 3 L33: 4.6086 L12: -0.6951 REMARK 3 L13: -3.1017 L23: 1.3771 REMARK 3 S TENSOR REMARK 3 S11: -0.5696 S12: -0.0754 S13: -0.0952 REMARK 3 S21: -0.0084 S22: 0.4196 S23: 0.3982 REMARK 3 S31: 0.1078 S32: -0.2901 S33: 0.2753 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97620 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 70.154 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.159 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.07 REMARK 200 R MERGE FOR SHELL (I) : 0.66100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES/NAOH PH 7, 8% (W/V) REMARK 280 POLYVINYL ALCOHOL, 7.5% (V/V) ISOPROPYL ALCOHOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.32000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 284 REMARK 465 PRO A 285 REMARK 465 ALA A 286 REMARK 465 GLN A 287 REMARK 465 GLY A 507 REMARK 465 LYS A 532 REMARK 465 LEU A 533 REMARK 465 GLY A 534 REMARK 465 LYS A 535 REMARK 465 ARG A 536 REMARK 465 VAL A 537 REMARK 465 PRO A 538 REMARK 465 GLU A 539 REMARK 465 ARG A 860 REMARK 465 ALA A 861 REMARK 465 GLY A 862 REMARK 465 ASP A 863 REMARK 465 GLY A 864 REMARK 465 GLY A 920 REMARK 465 ALA A 921 REMARK 465 GLU D 234 REMARK 465 VAL D 235 REMARK 465 ASN D 248 REMARK 465 VAL D 249 REMARK 465 LYS D 250 REMARK 465 GLU D 251 REMARK 465 ALA D 252 REMARK 465 GLU D 253 REMARK 465 ASP D 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 288 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 ASN A 343 CG OD1 ND2 REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 ARG A 439 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 456 CG CD OE1 OE2 REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 ARG A 473 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 475 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 478 CG CD OE1 OE2 REMARK 470 GLU A 506 CG CD OE1 OE2 REMARK 470 ARG A 521 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 524 CG CD OE1 OE2 REMARK 470 ARG A 531 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 628 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 774 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 791 CG CD OE1 OE2 REMARK 470 ARG A 800 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 801 CG CD OE1 OE2 REMARK 470 ARG A 807 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 811 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 831 CG CD OE1 OE2 REMARK 470 LYS A 869 CG CD CE NZ REMARK 470 LYS A 890 CG CD CE NZ REMARK 470 ARG A 914 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 231 CG CD CE NZ REMARK 470 LYS D 233 CG CD CE NZ REMARK 470 ARG D 247 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 687 CD REMARK 480 ASP A 886 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 373 -102.54 -107.61 REMARK 500 ASP A 383 78.96 -102.97 REMARK 500 ASN A 454 87.40 -66.44 REMARK 500 PHE A 462 46.72 -91.60 REMARK 500 ARG A 473 51.94 -117.70 REMARK 500 LEU A 513 -168.48 -111.14 REMARK 500 GLU A 528 45.66 -87.99 REMARK 500 ASN A 573 14.21 -69.62 REMARK 500 THR A 577 -20.68 -150.16 REMARK 500 LEU A 637 46.46 -82.38 REMARK 500 ASP A 674 85.27 -62.39 REMARK 500 LEU A 827 -152.17 -120.37 REMARK 500 ASN A 870 -11.16 -140.49 REMARK 500 THR A 900 -119.94 -127.70 REMARK 500 SER A 907 99.83 63.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 327 OG1 REMARK 620 2 ADP A1001 O2B 84.3 REMARK 620 3 HOH A1101 O 81.2 79.4 REMARK 620 4 HOH A1102 O 96.6 151.3 72.5 REMARK 620 5 HOH A1103 O 101.6 111.4 169.0 96.6 REMARK 620 6 HOH A1104 O 162.0 94.5 81.0 75.9 95.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 DBREF 6RMB A 286 921 UNP G0SEG4 G0SEG4_CHATD 286 921 DBREF 6RMB D 211 254 UNP G0SFN3 G0SFN3_CHATD 211 254 SEQADV 6RMB GLY A 284 UNP G0SEG4 EXPRESSION TAG SEQADV 6RMB PRO A 285 UNP G0SEG4 EXPRESSION TAG SEQADV 6RMB GLY D 208 UNP G0SFN3 EXPRESSION TAG SEQADV 6RMB PRO D 209 UNP G0SFN3 EXPRESSION TAG SEQADV 6RMB MET D 210 UNP G0SFN3 EXPRESSION TAG SEQRES 1 A 638 GLY PRO ALA GLN ARG THR ILE GLN GLU VAL ARG LYS SER SEQRES 2 A 638 LEU PRO VAL TYR ALA TYR ARG ASP ALA PHE LEU ASP ALA SEQRES 3 A 638 VAL LYS GLU TYR GLN VAL LEU ILE LEU VAL GLY GLU THR SEQRES 4 A 638 GLY SER GLY LYS THR THR GLN ILE PRO GLN TYR LEU HIS SEQRES 5 A 638 GLU ALA GLY TYR THR LYS GLY ASN ARG LYS ILE ALA CYS SEQRES 6 A 638 THR GLN PRO ARG ARG VAL ALA ALA MET SER VAL ALA ALA SEQRES 7 A 638 ARG VAL ALA ASP GLU MET GLY VAL ARG LEU GLY HIS GLU SEQRES 8 A 638 VAL GLY TYR SER ILE ARG PHE GLU ASP CYS THR SER GLU SEQRES 9 A 638 LYS THR ILE LEU LYS TYR MET THR ASP GLY MET LEU LEU SEQRES 10 A 638 ARG GLU MET VAL THR SER PRO ASP LEU ALA ASP TYR SER SEQRES 11 A 638 CYS ILE MET ILE ASP GLU ALA HIS GLU ARG THR VAL HIS SEQRES 12 A 638 THR ASP ILE LEU LEU ALA LEU ILE LYS ASP LEU THR ARG SEQRES 13 A 638 ALA ARG PRO GLU LEU ARG LEU ILE ILE SER SER ALA THR SEQRES 14 A 638 LEU ASN ALA GLU LYS PHE SER ALA TYR PHE ASP ASP ALA SEQRES 15 A 638 PRO ILE PHE ASN VAL PRO GLY ARG VAL HIS PRO VAL GLU SEQRES 16 A 638 VAL TYR TYR THR SER ALA PRO GLU SER ASN TYR LEU GLU SEQRES 17 A 638 ALA ALA LEU VAL THR VAL PHE GLN ILE HIS ALA THR GLN SEQRES 18 A 638 PRO GLU GLY ASP ILE LEU VAL PHE LEU THR GLY GLN GLU SEQRES 19 A 638 GLU ILE GLU ARG ALA CYS GLU ARG VAL GLU GLU ILE ARG SEQRES 20 A 638 ARG LYS LEU GLY LYS ARG VAL PRO GLU ILE ILE ALA LEU SEQRES 21 A 638 PRO ILE TYR SER ASN MET PRO SER GLU MET GLN ALA LYS SEQRES 22 A 638 ILE PHE GLU PRO THR PRO PRO GLY ALA ARG LYS VAL VAL SEQRES 23 A 638 PHE SER THR ASN ILE ALA GLU THR SER LEU THR ILE ASP SEQRES 24 A 638 GLY ILE VAL TYR VAL ILE ASP SER GLY TYR VAL LYS GLU SEQRES 25 A 638 ASN THR PHE SER PRO VAL GLY THR THR GLY GLN SER THR SEQRES 26 A 638 LEU ALA VAL VAL PRO CYS SER ARG ALA ALA ALA ASN GLN SEQRES 27 A 638 ARG MET GLY ARG ALA GLY ARG VAL LYS PRO GLY LYS CYS SEQRES 28 A 638 PHE ARG LEU TYR THR LYS TYR ALA TYR LEU SER GLU MET SEQRES 29 A 638 ASP GLU SER PRO THR PRO GLU ILE GLN ARG THR SER LEU SEQRES 30 A 638 SER SER VAL VAL LEU GLN LEU LYS ALA LEU GLY ILE ASP SEQRES 31 A 638 ASP LEU LEU GLY PHE ASP PHE LEU ASP PRO PRO PRO THR SEQRES 32 A 638 GLU LEU LEU ILE LYS SER LEU ASN MET LEU TYR ALA LEU SEQRES 33 A 638 GLY ALA LEU ASN SER ALA GLY GLN LEU THR ARG VAL GLY SEQRES 34 A 638 ARG GLN MET GLY GLU PHE PRO THR GLU PRO MET LEU ALA SEQRES 35 A 638 LYS ALA LEU ILE ALA ALA THR GLN GLU GLY CYS VAL SER SEQRES 36 A 638 GLU VAL LEU THR ILE VAL SER MET LEU GLY GLU VAL GLY SEQRES 37 A 638 THR LEU PHE PHE ARG PRO LYS ASP LYS LYS VAL HIS ALA SEQRES 38 A 638 ASP SER ALA ARG ALA ARG PHE THR VAL ARG ASP GLY GLY SEQRES 39 A 638 ASP HIS LEU THR LEU LEU ASN ILE TYR ASN GLN TRP VAL SEQRES 40 A 638 GLU ALA GLU TYR SER PRO ILE TRP ALA ARG GLU ASN PHE SEQRES 41 A 638 LEU ALA GLN ARG SER LEU THR ARG ALA ARG ASP VAL ARG SEQRES 42 A 638 ASP GLN LEU ALA LYS LEU CYS ASP ARG ILE LEU ASP GLY SEQRES 43 A 638 SER GLU ALA SER CYS GLY GLY VAL ASN ASN PRO THR PRO SEQRES 44 A 638 ILE LEU ARG ALA LEU THR ALA ALA PHE PHE LEU ASN ALA SEQRES 45 A 638 ALA ARG LEU ASN ARG ALA GLY ASP GLY TYR ARG THR LEU SEQRES 46 A 638 LYS ASN ASN ILE THR VAL TYR VAL HIS PRO SER SER VAL SEQRES 47 A 638 VAL ARG GLY MET ASP PRO PRO PRO LYS VAL ILE ILE TYR SEQRES 48 A 638 HIS GLU LEU VAL VAL THR SER LYS GLU TYR VAL ARG SER SEQRES 49 A 638 VAL ILE PRO VAL GLU PRO ARG TRP LEU SER GLU PHE GLY SEQRES 50 A 638 ALA SEQRES 1 D 47 GLY PRO MET VAL ASP ASP PHE GLY GLU ASN LEU LEU ARG SEQRES 2 D 47 SER PHE GLY TRP ASP GLY LYS MET ARG GLY LYS VAL LYS SEQRES 3 D 47 GLU VAL LYS ARG TYR ALA ASN LEU ALA GLY LEU GLY ALA SEQRES 4 D 47 ARG ASN VAL LYS GLU ALA GLU ASP HET ADP A1001 27 HET MG A1002 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ FORMUL 5 HOH *4(H2 O) HELIX 1 AA1 THR A 289 LEU A 297 1 9 HELIX 2 AA2 PRO A 298 ALA A 301 5 4 HELIX 3 AA3 TYR A 302 TYR A 313 1 12 HELIX 4 AA4 GLY A 325 ALA A 337 1 13 HELIX 5 AA5 ARG A 352 MET A 367 1 16 HELIX 6 AA6 ASP A 396 SER A 406 1 11 HELIX 7 AA7 ALA A 420 ARG A 423 5 4 HELIX 8 AA8 THR A 424 ARG A 441 1 18 HELIX 9 AA9 ALA A 455 PHE A 462 1 8 HELIX 10 AB1 ASN A 488 GLN A 504 1 17 HELIX 11 AB2 GLY A 515 GLU A 528 1 14 HELIX 12 AB3 PRO A 550 GLU A 559 1 10 HELIX 13 AB4 ASN A 573 SER A 578 1 6 HELIX 14 AB5 SER A 615 ARG A 625 1 11 HELIX 15 AB6 THR A 639 GLU A 646 1 8 HELIX 16 AB7 PRO A 653 ARG A 657 5 5 HELIX 17 AB8 LEU A 660 LEU A 670 1 11 HELIX 18 AB9 PRO A 685 LEU A 699 1 15 HELIX 19 AC1 THR A 709 GLU A 717 1 9 HELIX 20 AC2 GLU A 721 GLY A 735 1 15 HELIX 21 AC3 CYS A 736 GLY A 748 1 13 HELIX 22 AC4 PRO A 757 ASP A 759 5 3 HELIX 23 AC5 LYS A 760 ALA A 769 1 10 HELIX 24 AC6 GLY A 776 ALA A 792 1 17 HELIX 25 AC7 SER A 795 ASN A 802 1 8 HELIX 26 AC8 ALA A 805 LEU A 827 1 23 HELIX 27 AC9 GLY A 835 ASN A 839 5 5 HELIX 28 AD1 PRO A 840 PHE A 852 1 13 HELIX 29 AD2 SER A 880 MET A 885 5 6 HELIX 30 AD3 GLU A 912 PHE A 919 1 8 HELIX 31 AD4 PRO D 209 PHE D 222 1 14 SHEET 1 AA1 8 GLU A 382 CYS A 384 0 SHEET 2 AA1 8 VAL A 375 ILE A 379 -1 N ILE A 379 O GLU A 382 SHEET 3 AA1 8 LEU A 391 THR A 395 1 O TYR A 393 N GLY A 376 SHEET 4 AA1 8 LYS A 345 GLN A 350 1 N ILE A 346 O LYS A 392 SHEET 5 AA1 8 TYR A 412 ASP A 418 1 O MET A 416 N ALA A 347 SHEET 6 AA1 8 ARG A 445 SER A 450 1 O ARG A 445 N ILE A 415 SHEET 7 AA1 8 VAL A 315 GLY A 320 1 N LEU A 318 O ILE A 448 SHEET 8 AA1 8 ILE A 467 VAL A 470 1 O PHE A 468 N ILE A 317 SHEET 1 AA2 6 VAL A 477 TYR A 480 0 SHEET 2 AA2 6 GLY A 632 ARG A 636 1 O CYS A 634 N GLU A 478 SHEET 3 AA2 6 TYR A 586 ASP A 589 1 N VAL A 587 O PHE A 635 SHEET 4 AA2 6 ILE A 509 PHE A 512 1 N LEU A 510 O TYR A 586 SHEET 5 AA2 6 LYS A 567 SER A 571 1 O VAL A 569 N VAL A 511 SHEET 6 AA2 6 ILE A 541 ILE A 545 1 N ILE A 541 O VAL A 568 SHEET 1 AA3 5 TYR A 592 SER A 599 0 SHEET 2 AA3 5 GLN A 606 PRO A 613 -1 O THR A 608 N THR A 597 SHEET 3 AA3 5 VAL A 891 VAL A 899 1 O VAL A 899 N LEU A 609 SHEET 4 AA3 5 ALA A 855 ARG A 857 -1 N ALA A 856 O ILE A 892 SHEET 5 AA3 5 ARG A 866 THR A 867 -1 O ARG A 866 N ARG A 857 SHEET 1 AA4 5 TYR A 592 SER A 599 0 SHEET 2 AA4 5 GLN A 606 PRO A 613 -1 O THR A 608 N THR A 597 SHEET 3 AA4 5 VAL A 891 VAL A 899 1 O VAL A 899 N LEU A 609 SHEET 4 AA4 5 GLU A 903 PRO A 910 -1 O TYR A 904 N VAL A 898 SHEET 5 AA4 5 TYR A 875 VAL A 876 1 N TYR A 875 O GLU A 903 LINK OG1 THR A 327 MG MG A1002 1555 1555 1.99 LINK O2B ADP A1001 MG MG A1002 1555 1555 2.21 LINK MG MG A1002 O HOH A1101 1555 1555 2.26 LINK MG MG A1002 O HOH A1102 1555 1555 2.20 LINK MG MG A1002 O HOH A1103 1555 1555 1.97 LINK MG MG A1002 O HOH A1104 1555 1555 2.02 SITE 1 AC1 16 GLU A 321 THR A 322 GLY A 323 SER A 324 SITE 2 AC1 16 GLY A 325 LYS A 326 THR A 327 THR A 328 SITE 3 AC1 16 SER A 358 ARG A 362 PHE A 558 THR A 580 SITE 4 AC1 16 ASP A 582 MG A1002 HOH A1101 HOH A1104 SITE 1 AC2 6 THR A 327 ADP A1001 HOH A1101 HOH A1102 SITE 2 AC2 6 HOH A1103 HOH A1104 CRYST1 69.360 72.640 70.270 90.00 93.29 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014418 0.000000 0.000829 0.00000 SCALE2 0.000000 0.013767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014254 0.00000