HEADER DNA 09-MAY-19 6RNL TITLE L-[RU(TAP)2(DPPZ)]2+ BOUND TO THE G-QUADRUPLEX FORMING SEQUENCE TITLE 2 D(TAGGGTT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*AP*GP*GP*GP*TP*T)-3'); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RUTHENIUM, INTERCALATION, DNA, ASYMMETRIC EXPDTA X-RAY DIFFRACTION AUTHOR K.T.MCQUAID,J.P.HALL,C.J.CARDIN REVDAT 2 11-SEP-19 6RNL 1 JRNL REVDAT 1 28-AUG-19 6RNL 0 JRNL AUTH K.MCQUAID,J.P.HALL,L.BAUMGAERTNER,D.J.CARDIN,C.J.CARDIN JRNL TITL THREE THYMINE/ADENINE BINDING MODES OF THE RUTHENIUM COMPLEX JRNL TITL 2 LAMBDA-[RU(TAP)2(DPPZ)]2+TO THE G-QUADRUPLEX FORMING JRNL TITL 3 SEQUENCE D(TAGGGTT) SHOWN BY X-RAY CRYSTALLOGRAPHY. JRNL REF CHEM.COMMUN.(CAMB.) V. 55 9116 2019 JRNL REFN ESSN 1364-548X JRNL PMID 31298665 JRNL DOI 10.1039/C9CC04316K REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15RC2_3433: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 17170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2941 - 3.4156 1.00 2748 146 0.1242 0.1475 REMARK 3 2 3.4156 - 2.7115 1.00 2785 128 0.1763 0.2214 REMARK 3 3 2.7115 - 2.3688 1.00 2718 149 0.2461 0.2770 REMARK 3 4 2.3688 - 2.1523 1.00 2754 112 0.3056 0.3513 REMARK 3 5 2.1523 - 1.9981 1.00 2774 154 0.3143 0.3399 REMARK 3 6 1.9981 - 1.8803 0.93 2561 141 0.4118 0.3905 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 900 REMARK 3 ANGLE : 2.287 1428 REMARK 3 CHIRALITY : 0.052 108 REMARK 3 PLANARITY : 0.015 40 REMARK 3 DIHEDRAL : 34.296 264 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3017 11.4391 -2.3338 REMARK 3 T TENSOR REMARK 3 T11: 0.4704 T22: 0.3449 REMARK 3 T33: 0.3925 T12: 0.1018 REMARK 3 T13: -0.1077 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 1.8673 L22: 1.5021 REMARK 3 L33: 3.8548 L12: -0.0107 REMARK 3 L13: -1.1727 L23: 2.1515 REMARK 3 S TENSOR REMARK 3 S11: -0.3876 S12: 0.3703 S13: 0.1812 REMARK 3 S21: 0.2446 S22: 0.0871 S23: 0.0369 REMARK 3 S31: -0.7258 S32: 0.0488 S33: 0.1115 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2441 3.6921 -0.2447 REMARK 3 T TENSOR REMARK 3 T11: 0.3096 T22: 0.3886 REMARK 3 T33: 0.3428 T12: 0.0497 REMARK 3 T13: -0.0489 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 5.2080 L22: 3.3668 REMARK 3 L33: 5.8628 L12: 0.3501 REMARK 3 L13: 1.4077 L23: 1.4194 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.1404 S13: 0.0350 REMARK 3 S21: -0.1085 S22: -0.1535 S23: -0.1155 REMARK 3 S31: -0.3611 S32: -0.6418 S33: 0.2003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0395 0.3157 1.0612 REMARK 3 T TENSOR REMARK 3 T11: 0.3057 T22: 0.6128 REMARK 3 T33: 0.4266 T12: 0.0690 REMARK 3 T13: -0.0157 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 4.1630 L22: 1.6979 REMARK 3 L33: 4.8383 L12: 1.7533 REMARK 3 L13: 4.1448 L23: 0.9025 REMARK 3 S TENSOR REMARK 3 S11: 0.2925 S12: -0.4246 S13: -0.7569 REMARK 3 S21: 0.2117 S22: -0.0840 S23: 0.3286 REMARK 3 S31: 0.3051 S32: -1.0382 S33: -0.1968 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5777 8.2858 -1.4727 REMARK 3 T TENSOR REMARK 3 T11: 0.4261 T22: 0.6655 REMARK 3 T33: 0.4676 T12: 0.1654 REMARK 3 T13: -0.0289 T23: -0.1129 REMARK 3 L TENSOR REMARK 3 L11: 1.6657 L22: 4.7907 REMARK 3 L33: 6.4524 L12: -0.2949 REMARK 3 L13: 2.7828 L23: -0.8221 REMARK 3 S TENSOR REMARK 3 S11: -0.1966 S12: -0.5071 S13: 0.3281 REMARK 3 S21: 0.0031 S22: 0.3009 S23: 0.0499 REMARK 3 S31: -0.8191 S32: -1.0749 S33: -0.0370 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RNL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.5570 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS, XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17170 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 32.289 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : 0.12020 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RED RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M POTASSIUM CHLORIDE, 0.025 SODIUM REMARK 280 CACODYLATE, 17.5% TACSIMATE PH 6.0, AND 0.0005 M SPERMINE., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.86933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.93467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.40200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.46733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 107.33667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 5 O3' DG D 5 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 226 DISTANCE = 6.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 3 O6 REMARK 620 2 DG A 4 O6 68.6 REMARK 620 3 DG B 3 O6 74.0 88.7 REMARK 620 4 DG B 4 O6 123.8 66.3 73.2 REMARK 620 5 DG C 3 O6 125.2 151.3 73.9 86.6 REMARK 620 6 DG C 4 O6 148.5 98.3 136.1 70.4 80.2 REMARK 620 7 DG D 3 O6 82.5 124.7 127.9 152.3 83.8 82.4 REMARK 620 8 DG D 4 O6 91.3 63.3 151.7 96.9 133.0 57.8 71.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 4 O6 REMARK 620 2 DG A 5 O6 73.2 REMARK 620 3 DG B 4 O6 69.7 89.9 REMARK 620 4 DG B 5 O6 126.8 71.3 71.9 REMARK 620 5 DG C 4 O6 107.7 161.8 73.9 95.2 REMARK 620 6 DG C 5 O6 161.0 107.7 128.8 69.4 77.6 REMARK 620 7 DG D 4 O6 73.2 128.9 112.7 157.8 66.8 93.2 REMARK 620 8 DG D 5 O6 89.2 70.0 154.6 113.5 127.9 73.8 72.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 216 O REMARK 620 2 HOH A 211 O 102.5 REMARK 620 3 HOH A 221 O 165.9 85.6 REMARK 620 4 HOH B 120 O 97.4 89.3 94.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RKL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RKL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RKL C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RKL D 101 DBREF 6RNL A 1 7 PDB 6RNL 6RNL 1 7 DBREF 6RNL B 1 7 PDB 6RNL 6RNL 1 7 DBREF 6RNL C 1 7 PDB 6RNL 6RNL 1 7 DBREF 6RNL D 1 7 PDB 6RNL 6RNL 1 7 SEQRES 1 A 7 DT DA DG DG DG DT DT SEQRES 1 B 7 DT DA DG DG DG DT DT SEQRES 1 C 7 DT DA DG DG DG DT DT SEQRES 1 D 7 DT DA DG DG DG DT DT HET K A 101 1 HET RKL A 102 73 HET RKL A 103 73 HET NA A 104 1 HET K C 101 1 HET RKL C 102 73 HET RKL D 101 73 HETNAM K POTASSIUM ION HETNAM RKL RU(TAP)2(DPPZ) COMPLEX HETNAM NA SODIUM ION FORMUL 5 K 2(K 1+) FORMUL 6 RKL 4(C38 H22 N12 RU 2+) FORMUL 8 NA NA 1+ FORMUL 12 HOH *75(H2 O) LINK O6 DG A 3 K K C 101 1555 1555 2.64 LINK O6 DG A 4 K K A 101 1555 1555 2.81 LINK O6 DG A 4 K K C 101 1555 1555 3.00 LINK O6 DG A 5 K K A 101 1555 1555 2.76 LINK O6 DG B 3 K K C 101 1555 1555 2.63 LINK O6 DG B 4 K K A 101 1555 1555 2.77 LINK O6 DG B 4 K K C 101 1555 1555 2.83 LINK O6 DG B 5 K K A 101 1555 1555 2.77 LINK O6 DG C 3 K K C 101 1555 1555 2.58 LINK O6 DG C 4 K K A 101 1555 1555 2.74 LINK O6 DG C 4 K K C 101 1555 1555 2.92 LINK O6 DG C 5 K K A 101 1555 1555 2.80 LINK O6 DG D 3 K K C 101 1555 1555 2.45 LINK O6 DG D 4 K K A 101 1555 1555 2.73 LINK O6 DG D 4 K K C 101 1555 1555 3.28 LINK O6 DG D 5 K K A 101 1555 1555 2.77 LINK NA NA A 104 O HOH A 216 1555 1555 2.50 LINK NA NA A 104 O HOH A 211 1555 1555 2.50 LINK NA NA A 104 O HOH A 221 1555 1555 2.39 LINK NA NA A 104 O HOH B 120 1555 6554 2.47 SITE 1 AC1 9 DG A 4 DG A 5 DG B 4 DG B 5 SITE 2 AC1 9 DG C 4 DG C 5 K C 101 DG D 4 SITE 3 AC1 9 DG D 5 SITE 1 AC2 7 DT A 6 DT A 7 RKL A 103 NA A 104 SITE 2 AC2 7 DT C 1 DA C 2 DT C 7 SITE 1 AC3 17 DT A 6 RKL A 102 HOH A 211 HOH A 215 SITE 2 AC3 17 HOH A 218 DT B 1 DA B 2 DG B 3 SITE 3 AC3 17 DG B 4 DT B 6 DT B 7 HOH B 108 SITE 4 AC3 17 DA C 2 DT D 1 DA D 2 DT D 7 SITE 5 AC3 17 RKL D 101 SITE 1 AC4 5 RKL A 102 HOH A 211 HOH A 216 HOH A 221 SITE 2 AC4 5 HOH B 120 SITE 1 AC5 9 DG A 3 DG A 4 K A 101 DG B 3 SITE 2 AC5 9 DG B 4 DG C 3 DG C 4 DG D 3 SITE 3 AC5 9 DG D 4 SITE 1 AC6 6 DT A 1 DA A 2 DT A 7 DT C 6 SITE 2 AC6 6 DT C 7 HOH C 207 SITE 1 AC7 10 DA A 2 RKL A 103 DT B 6 DT B 7 SITE 2 AC7 10 HOH B 107 DG C 5 DT C 6 DT D 6 SITE 3 AC7 10 DT D 7 HOH D 208 CRYST1 38.514 38.514 128.804 90.00 90.00 120.00 P 65 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025964 0.014991 0.000000 0.00000 SCALE2 0.000000 0.029981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007764 0.00000