HEADER HYDROLASE 09-MAY-19 6RNR TITLE THE CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE LLFPG PROTEIN, A THF- TITLE 2 DNA AND AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAPY-DNA GLYCOSYLASE,DNA-(APURINIC OR APYRIMIDINIC SITE) COMPND 5 LYASE MUTM,AP LYASE MUTM; COMPND 6 EC: 3.2.2.23,4.2.99.18; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)- COMPND 10 3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'); COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS; SOURCE 3 ORGANISM_TAXID: 1359; SOURCE 4 GENE: MUTM, FPG, NCDO763_0992; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS DNA GLYCOSYLASE COMPLEX, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.COSTE,S.GOFFINONT,B.CASTAING REVDAT 2 24-JAN-24 6RNR 1 REMARK REVDAT 1 15-APR-20 6RNR 0 JRNL AUTH C.RIEUX,S.GOFFINONT,F.COSTE,Z.TBER,J.CROS,V.ROY,M.GUERIN, JRNL AUTH 2 V.GAUDON,S.BOURG,A.BIELA,V.AUCAGNE,L.AGROFOGLIO,N.GARNIER, JRNL AUTH 3 B.CASTAING JRNL TITL THIOPURINE DERIVATIVE-INDUCED FPG/NEI DNA GLYCOSYLASE JRNL TITL 2 INHIBITION: STRUCTURAL, DYNAMIC AND FUNCTIONAL INSIGHTS. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 32192183 JRNL DOI 10.3390/IJMS21062058 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 41035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9185 - 4.9370 0.99 2845 141 0.1541 0.1609 REMARK 3 2 4.9370 - 3.9193 1.00 2691 154 0.1240 0.1209 REMARK 3 3 3.9193 - 3.4241 1.00 2644 146 0.1549 0.1605 REMARK 3 4 3.4241 - 3.1111 0.99 2640 129 0.1868 0.2065 REMARK 3 5 3.1111 - 2.8881 1.00 2621 148 0.2252 0.2869 REMARK 3 6 2.8881 - 2.7179 0.99 2605 133 0.2263 0.2939 REMARK 3 7 2.7179 - 2.5818 1.00 2606 146 0.2228 0.2789 REMARK 3 8 2.5818 - 2.4694 1.00 2566 153 0.1996 0.2458 REMARK 3 9 2.4694 - 2.3743 1.00 2602 134 0.1868 0.2361 REMARK 3 10 2.3743 - 2.2924 1.00 2575 144 0.1921 0.2399 REMARK 3 11 2.2924 - 2.2207 0.86 2233 128 0.1872 0.2362 REMARK 3 12 2.2207 - 2.1572 1.00 2578 133 0.1914 0.2261 REMARK 3 13 2.1572 - 2.1005 1.00 2580 143 0.2121 0.2389 REMARK 3 14 2.1005 - 2.0492 1.00 2546 161 0.2300 0.2837 REMARK 3 15 2.0492 - 2.0026 1.00 2594 116 0.2387 0.2497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2821 REMARK 3 ANGLE : 0.979 3917 REMARK 3 CHIRALITY : 0.056 438 REMARK 3 PLANARITY : 0.005 399 REMARK 3 DIHEDRAL : 18.143 1627 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6875 3.4790 11.4591 REMARK 3 T TENSOR REMARK 3 T11: 0.4562 T22: 0.5132 REMARK 3 T33: 0.4900 T12: 0.0514 REMARK 3 T13: -0.0819 T23: -0.0783 REMARK 3 L TENSOR REMARK 3 L11: 1.4762 L22: 2.5313 REMARK 3 L33: 1.9006 L12: 0.5683 REMARK 3 L13: -0.1627 L23: -0.6782 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: -0.1052 S13: 0.1679 REMARK 3 S21: -0.3330 S22: -0.0428 S23: 0.6905 REMARK 3 S31: -0.0741 S32: -0.8247 S33: 0.0148 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 15 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9158 2.9213 11.0030 REMARK 3 T TENSOR REMARK 3 T11: 0.3236 T22: 0.5651 REMARK 3 T33: 0.3544 T12: 0.0359 REMARK 3 T13: -0.0727 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: 4.4807 L22: 2.5839 REMARK 3 L33: 3.7977 L12: 1.0916 REMARK 3 L13: -0.7257 L23: -0.7115 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: -0.0356 S13: -0.0259 REMARK 3 S21: -0.0827 S22: 0.2327 S23: 0.2509 REMARK 3 S31: 0.3783 S32: -0.8390 S33: -0.1329 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9228 12.1310 14.4931 REMARK 3 T TENSOR REMARK 3 T11: 0.3560 T22: 0.2501 REMARK 3 T33: 0.3186 T12: -0.0059 REMARK 3 T13: 0.0099 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 3.4762 L22: 2.0652 REMARK 3 L33: 3.4012 L12: 0.7635 REMARK 3 L13: -0.6646 L23: -0.7727 REMARK 3 S TENSOR REMARK 3 S11: 0.1472 S12: -0.1622 S13: 0.0628 REMARK 3 S21: -0.0711 S22: -0.2239 S23: -0.3734 REMARK 3 S31: -0.3091 S32: 0.2703 S33: 0.0674 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5173 6.1643 2.2754 REMARK 3 T TENSOR REMARK 3 T11: 0.4139 T22: 0.3529 REMARK 3 T33: 0.3570 T12: 0.0467 REMARK 3 T13: 0.0095 T23: -0.0765 REMARK 3 L TENSOR REMARK 3 L11: 3.2045 L22: 0.3019 REMARK 3 L33: 3.4087 L12: 0.3830 REMARK 3 L13: -1.5209 L23: -0.9311 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: 0.5474 S13: -0.1646 REMARK 3 S21: -0.2530 S22: 0.0366 S23: -0.0407 REMARK 3 S31: 0.2495 S32: -0.2352 S33: -0.0860 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3312 1.6718 24.3538 REMARK 3 T TENSOR REMARK 3 T11: 0.3296 T22: 0.3063 REMARK 3 T33: 0.3386 T12: -0.0031 REMARK 3 T13: -0.0303 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.2574 L22: 1.7254 REMARK 3 L33: 3.0718 L12: 0.8004 REMARK 3 L13: -0.7528 L23: -0.8086 REMARK 3 S TENSOR REMARK 3 S11: 0.1328 S12: -0.2086 S13: -0.1779 REMARK 3 S21: 0.1424 S22: -0.1724 S23: -0.0537 REMARK 3 S31: 0.1223 S32: -0.1580 S33: 0.0350 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0923 -10.8713 22.5282 REMARK 3 T TENSOR REMARK 3 T11: 0.5302 T22: 0.2890 REMARK 3 T33: 0.5369 T12: 0.0197 REMARK 3 T13: -0.0240 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 3.1145 L22: 4.6672 REMARK 3 L33: 1.9013 L12: 1.8556 REMARK 3 L13: -0.8021 L23: -1.0714 REMARK 3 S TENSOR REMARK 3 S11: -0.0974 S12: 0.0402 S13: -0.5883 REMARK 3 S21: -0.2956 S22: -0.1384 S23: -0.7166 REMARK 3 S31: 0.3942 S32: 0.4138 S33: 0.3087 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2861 -19.4569 16.7099 REMARK 3 T TENSOR REMARK 3 T11: 0.5679 T22: 0.4769 REMARK 3 T33: 0.5964 T12: -0.1274 REMARK 3 T13: 0.0278 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 8.4841 L22: 2.8727 REMARK 3 L33: 6.7179 L12: 0.3117 REMARK 3 L13: -4.1455 L23: 3.5019 REMARK 3 S TENSOR REMARK 3 S11: -0.3595 S12: -0.0715 S13: -1.3922 REMARK 3 S21: -0.4050 S22: -0.0905 S23: 0.1811 REMARK 3 S31: 0.8096 S32: 0.0524 S33: 0.4885 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4981 -14.4776 22.4701 REMARK 3 T TENSOR REMARK 3 T11: 0.7073 T22: 0.4421 REMARK 3 T33: 0.5377 T12: -0.2096 REMARK 3 T13: 0.0179 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 1.6070 L22: 5.8497 REMARK 3 L33: 4.4677 L12: 2.3136 REMARK 3 L13: -2.0560 L23: -3.2806 REMARK 3 S TENSOR REMARK 3 S11: -0.0731 S12: 0.1256 S13: -0.5095 REMARK 3 S21: 0.6391 S22: -0.2855 S23: -0.3037 REMARK 3 S31: 0.4497 S32: -0.5448 S33: 0.3677 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41111 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PM5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, CITRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.80850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.90650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.90650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.40425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.90650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.90650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.21275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.90650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.90650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.40425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.90650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.90650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.21275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.80850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 137A REMARK 465 ILE A 219 REMARK 465 ARG A 220 REMARK 465 THR A 221 REMARK 465 TYR A 222 REMARK 465 SER A 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CD CE NZ REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 LYS A 130 CD CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 74 -123.52 49.83 REMARK 500 GLU A 76 12.37 -141.69 REMARK 500 ASP A 107 101.96 -161.89 REMARK 500 VAL A 237 -37.20 -130.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KBN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 DBREF1 6RNR A 1 271 UNP A0A165FVI1_LACLC DBREF2 6RNR A A0A165FVI1 2 272 DBREF 6RNR D 1 14 PDB 6RNR 6RNR 1 14 DBREF 6RNR E 15 28 PDB 6RNR 6RNR 15 28 SEQADV 6RNR ASP A 137A UNP A0A165FVI INSERTION SEQRES 1 A 272 PRO GLU LEU PRO GLU VAL GLU THR VAL ARG ARG GLU LEU SEQRES 2 A 272 GLU LYS ARG ILE VAL GLY GLN LYS ILE ILE SER ILE GLU SEQRES 3 A 272 ALA THR TYR PRO ARG MET VAL LEU THR GLY PHE GLU GLN SEQRES 4 A 272 LEU LYS LYS GLU LEU THR GLY LYS THR ILE GLN GLY ILE SEQRES 5 A 272 SER ARG ARG GLY LYS TYR LEU ILE PHE GLU ILE GLY ASP SEQRES 6 A 272 ASP PHE ARG LEU ILE SER HIS LEU ARG MET GLU GLY LYS SEQRES 7 A 272 TYR ARG LEU ALA THR LEU ASP ALA PRO ARG GLU LYS HIS SEQRES 8 A 272 ASP HIS LEU THR MET LYS PHE ALA ASP GLY GLN LEU ILE SEQRES 9 A 272 TYR ALA ASP VAL ARG LYS PHE GLY THR TRP GLU LEU ILE SEQRES 10 A 272 SER THR ASP GLN VAL LEU PRO TYR PHE LEU LYS LYS LYS SEQRES 11 A 272 ILE GLY PRO GLU PRO THR TYR ASP GLU ASP PHE ASP GLU SEQRES 12 A 272 LYS LEU PHE ARG GLU LYS LEU ARG LYS SER THR LYS LYS SEQRES 13 A 272 ILE LYS PRO TYR LEU LEU GLU GLN THR LEU VAL ALA GLY SEQRES 14 A 272 LEU GLY ASN ILE TYR VAL ASP GLU VAL LEU TRP LEU ALA SEQRES 15 A 272 LYS ILE HIS PRO GLU LYS GLU THR ASN GLN LEU ILE GLU SEQRES 16 A 272 SER SER ILE HIS LEU LEU HIS ASP SER ILE ILE GLU ILE SEQRES 17 A 272 LEU GLN LYS ALA ILE LYS LEU GLY GLY SER SER ILE ARG SEQRES 18 A 272 THR TYR SER ALA LEU GLY SER THR GLY LYS MET GLN ASN SEQRES 19 A 272 GLU LEU GLN VAL TYR GLY LYS THR GLY GLU LYS CYS SER SEQRES 20 A 272 ARG CYS GLY ALA GLU ILE GLN LYS ILE LYS VAL ALA GLY SEQRES 21 A 272 ARG GLY THR HIS PHE CYS PRO VAL CYS GLN GLN LYS SEQRES 1 D 14 DC DT DC DT DT DT 3DR DT DT DT DC DT DC SEQRES 2 D 14 DG SEQRES 1 E 14 DG DC DG DA DG DA DA DA DC DA DA DA DG SEQRES 2 E 14 DA HET 3DR D 7 11 HET KBN A 301 14 HET GOL A 302 6 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM KBN 2-(TRIFLUOROMETHYL)-9~{H}-PURINE-6-THIOL HETNAM GOL GLYCEROL HETSYN 3DR ABASIC DIDEOXYRIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 3DR C5 H11 O6 P FORMUL 4 KBN C6 H3 F3 N4 S FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *112(H2 O) HELIX 1 AA1 GLU A 2 VAL A 18 1 17 HELIX 2 AA2 TYR A 29 VAL A 33 5 5 HELIX 3 AA3 GLY A 36 THR A 45 1 10 HELIX 4 AA4 GLN A 121 LYS A 129 1 9 HELIX 5 AA5 ASP A 141 SER A 152 1 12 HELIX 6 AA6 LYS A 155 GLU A 162 1 8 HELIX 7 AA7 GLY A 170 ALA A 181 1 12 HELIX 8 AA8 GLU A 188 LEU A 192 5 5 HELIX 9 AA9 ILE A 193 LEU A 214 1 22 HELIX 10 AB1 LYS A 230 LEU A 235 5 6 SHEET 1 AA1 4 SER A 24 ALA A 27 0 SHEET 2 AA1 4 ASP A 92 LYS A 97 -1 O LYS A 97 N SER A 24 SHEET 3 AA1 4 GLN A 102 ALA A 106 -1 O TYR A 105 N HIS A 93 SHEET 4 AA1 4 LYS A 78 ALA A 82 -1 N ARG A 80 O ILE A 104 SHEET 1 AA2 4 ILE A 49 ARG A 55 0 SHEET 2 AA2 4 TYR A 58 ILE A 63 -1 O GLU A 62 N GLN A 50 SHEET 3 AA2 4 PHE A 67 HIS A 72 -1 O SER A 71 N LEU A 59 SHEET 4 AA2 4 THR A 113 SER A 118 -1 O GLU A 115 N ILE A 70 SHEET 1 AA3 2 GLN A 253 VAL A 257 0 SHEET 2 AA3 2 ARG A 260 PHE A 264 -1 O THR A 262 N ILE A 255 SSBOND 1 CYS A 245 CYS A 265 1555 1555 2.05 LINK O3' DT D 6 P 3DR D 7 1555 1555 1.60 LINK O3' 3DR D 7 P DT D 8 1555 1555 1.61 SITE 1 AC1 6 LYS A 57 LEU A 161 ARG A 260 DT D 8 SITE 2 AC1 6 DT D 9 DT D 10 SITE 1 AC2 9 TYR A 58 HIS A 72 ARG A 74 THR A 113 SITE 2 AC2 9 GLU A 115 TYR A 125 LYS A 129 DT D 9 SITE 3 AC2 9 DT D 10 CRYST1 91.813 91.813 141.617 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010892 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007061 0.00000