HEADER ANTIMICROBIAL PROTEIN 10-MAY-19 6RO3 TITLE 2YR-X: LYSOZYME WITH RE CLUSTER 2 YEAR ON SHELF COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS RADIO-PHARMACEUTICALS, ORGANOMETALLIC COMPLEX, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BRINK,J.R.HELLIWELL REVDAT 3 24-JAN-24 6RO3 1 REMARK REVDAT 2 31-JUL-19 6RO3 1 JRNL REMARK REVDAT 1 19-JUN-19 6RO3 0 JRNL AUTH A.BRINK,J.R.HELLIWELL JRNL TITL FORMATION OF A HIGHLY DENSE TETRA-RHENIUM CLUSTER IN A JRNL TITL 2 PROTEIN CRYSTAL AND ITS IMPLICATIONS IN MEDICAL IMAGING. JRNL REF IUCRJ V. 6 695 2019 JRNL REFN ESSN 2052-2525 JRNL PMID 31316813 JRNL DOI 10.1107/S2052252519006651 REMARK 2 REMARK 2 RESOLUTION. 1.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 55334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.112 REMARK 3 R VALUE (WORKING SET) : 0.111 REMARK 3 FREE R VALUE : 0.118 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 2834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0001 - 2.7956 1.00 3033 159 0.1566 0.1486 REMARK 3 2 2.7956 - 2.2190 1.00 2875 154 0.1330 0.1370 REMARK 3 3 2.2190 - 1.9385 1.00 2825 160 0.1207 0.1266 REMARK 3 4 1.9385 - 1.7612 1.00 2822 149 0.1115 0.1189 REMARK 3 5 1.7612 - 1.6350 1.00 2824 147 0.0948 0.1046 REMARK 3 6 1.6350 - 1.5386 1.00 2781 151 0.0864 0.0972 REMARK 3 7 1.5386 - 1.4615 1.00 2800 130 0.0822 0.0986 REMARK 3 8 1.4615 - 1.3979 1.00 2765 165 0.0824 0.1002 REMARK 3 9 1.3979 - 1.3441 1.00 2781 152 0.0830 0.0947 REMARK 3 10 1.3441 - 1.2977 1.00 2784 147 0.0837 0.0944 REMARK 3 11 1.2977 - 1.2571 1.00 2733 157 0.0883 0.0920 REMARK 3 12 1.2571 - 1.2212 1.00 2782 145 0.0862 0.1067 REMARK 3 13 1.2212 - 1.1890 1.00 2755 142 0.0861 0.0917 REMARK 3 14 1.1890 - 1.1600 1.00 2766 154 0.0848 0.0936 REMARK 3 15 1.1600 - 1.1337 0.97 2682 141 0.0872 0.0918 REMARK 3 16 1.1337 - 1.1095 0.92 2494 157 0.0949 0.1103 REMARK 3 17 1.1095 - 1.0873 0.84 2340 115 0.0963 0.1044 REMARK 3 18 1.0873 - 1.0668 0.77 2125 109 0.1098 0.1227 REMARK 3 19 1.0668 - 1.0478 0.69 1905 114 0.1163 0.1365 REMARK 3 20 1.0478 - 1.0300 0.59 1628 86 0.1329 0.1351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.040 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 7.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1227 REMARK 3 ANGLE : 1.764 1784 REMARK 3 CHIRALITY : 0.093 166 REMARK 3 PLANARITY : 0.007 199 REMARK 3 DIHEDRAL : 12.539 451 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55335 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.030 REMARK 200 RESOLUTION RANGE LOW (A) : 39.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.16460 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2W1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: STANDARD HEN EGG WHITE LYSOZYME (20 REMARK 280 MG) CRYSTALLISATION CONDITIONS WERE USED OF 10% NACL, NAOAC 0.04 REMARK 280 M (PH 4.7) AND THE FAC-[ET4N]2[RE(CO)3(BR)3] AT 0.03 M IN 1.4 ML REMARK 280 WATER, IN SITTING DROP CONDITIONS, INITIALLY INCLUDED WITH DMSO REMARK 280 (AT 7.5 % V/V)., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.23000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.97000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.34500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.97000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.11500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.97000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.97000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.34500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.97000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.97000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.11500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 364 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 411 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 121 CG CD OE1 NE2 REMARK 480 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 480 LEU A 129 C O OXT REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ALA A 122 O7 KBW A 209 3744 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 KBW A 208 REMARK 615 KBW A 209 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RE A 206 RE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 1 NZ REMARK 620 2 GLU A 7 OE2 92.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RRE A 211 RE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 RRE A 211 C4 95.1 REMARK 620 3 RRE A 211 C6 92.7 88.0 REMARK 620 4 RRE A 211 C5 175.4 87.8 90.9 REMARK 620 5 RRE A 211 O12 82.2 176.7 90.2 95.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 215 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 HOH A 328 O 107.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 91.6 REMARK 620 3 SER A 72 OG 87.6 165.1 REMARK 620 4 ARG A 73 O 96.5 91.1 103.8 REMARK 620 5 HOH A 340 O 100.5 88.0 77.5 162.9 REMARK 620 6 HOH A 359 O 169.3 98.7 81.6 86.0 77.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RE A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RE A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KBW A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KBW A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KBW A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RRE A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RRE A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 215 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NBJ RELATED DB: PDB DBREF 6RO3 A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET CL A 201 1 HET CL A 202 1 HET CL A 203 1 HET NA A 204 1 HET RE A 205 1 HET RE A 206 1 HET KBW A 207 32 HET KBW A 208 32 HET KBW A 209 32 HET RRE A 210 10 HET RRE A 211 8 HET CL A 212 1 HET BR A 213 1 HET ACT A 214 7 HET NA A 215 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM RE RHENIUM HETNAM KBW RE4(MU3-OH)4(CO)12 HETNAM RRE FAC-TRICARBONYL-TRIAQUA RHENIUM(I) HETNAM BR BROMIDE ION HETNAM ACT ACETATE ION FORMUL 2 CL 4(CL 1-) FORMUL 5 NA 2(NA 1+) FORMUL 6 RE 2(RE) FORMUL 8 KBW 3(C12 O16 RE4) FORMUL 11 RRE 2(C3 O6 RE 1+) FORMUL 14 BR BR 1- FORMUL 15 ACT C2 H3 O2 1- FORMUL 17 HOH *120(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.04 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.04 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.05 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.04 LINK NZ ALYS A 1 RE RE A 206 1555 1555 2.24 LINK OE2 GLU A 7 RE RE A 206 1555 1555 2.07 LINK NE2 HIS A 15 RE1 RRE A 211 1555 1555 2.22 LINK OE1 GLU A 35 NA NA A 215 1555 1555 2.78 LINK O SER A 60 NA NA A 204 1555 1555 2.38 LINK O CYS A 64 NA NA A 204 1555 1555 2.37 LINK OG SER A 72 NA NA A 204 1555 1555 2.44 LINK O ARG A 73 NA NA A 204 1555 1555 2.40 LINK OD2 ASP A 119 RE RE A 205 1555 1555 2.27 LINK NA NA A 204 O HOH A 340 1555 1555 2.50 LINK NA NA A 204 O HOH A 359 1555 1555 2.47 LINK NA NA A 215 O HOH A 328 1555 1555 2.34 SITE 1 AC1 2 TYR A 23 ASN A 113 SITE 1 AC2 5 ASN A 65 GLY A 67 ARG A 68 THR A 69 SITE 2 AC2 5 SER A 72 SITE 1 AC3 4 ASN A 65 PRO A 79 HOH A 396 HOH A 418 SITE 1 AC4 6 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 AC4 6 HOH A 340 HOH A 359 SITE 1 AC5 1 ASP A 119 SITE 1 AC6 2 LYS A 1 GLU A 7 SITE 1 AC7 16 LYS A 13 LEU A 25 ASP A 48 ARG A 61 SITE 2 AC7 16 THR A 69 PRO A 70 GLY A 71 SER A 72 SITE 3 AC7 16 ILE A 124 ARG A 125 LEU A 129 HOH A 304 SITE 4 AC7 16 HOH A 305 HOH A 308 HOH A 376 HOH A 415 SITE 1 AC8 13 ARG A 5 LYS A 33 PHE A 38 TRP A 62 SITE 2 AC8 13 TRP A 63 ARG A 73 LEU A 75 ASP A 101 SITE 3 AC8 13 ASN A 103 TRP A 123 KBW A 209 RRE A 210 SITE 4 AC8 13 HOH A 363 SITE 1 AC9 6 ASP A 101 GLY A 117 THR A 118 ASP A 119 SITE 2 AC9 6 KBW A 208 HOH A 354 SITE 1 AD1 10 SER A 24 ASN A 27 LYS A 33 PHE A 34 SITE 2 AD1 10 ARG A 114 THR A 118 ASP A 119 VAL A 120 SITE 3 AD1 10 KBW A 208 CL A 212 SITE 1 AD2 5 ALA A 11 ARG A 14 HIS A 15 ASP A 87 SITE 2 AD2 5 BR A 213 SITE 1 AD3 5 SER A 24 GLY A 26 GLN A 121 RRE A 210 SITE 2 AD3 5 HOH A 415 SITE 1 AD4 3 HIS A 15 ILE A 88 RRE A 211 SITE 1 AD5 7 GLN A 57 ILE A 58 ASN A 59 TRP A 63 SITE 2 AD5 7 ALA A 107 TRP A 108 HOH A 381 SITE 1 AD6 2 GLU A 35 HOH A 328 CRYST1 79.940 79.940 36.460 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012509 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012509 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027427 0.00000