HEADER HYDROLASE 13-MAY-19 6RP0 TITLE THE CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE LLFPG PROTEIN, A THF- TITLE 2 DNA AND AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)- COMPND 7 3'); COMPND 8 CHAIN: B, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS; SOURCE 3 ORGANISM_TAXID: 1359; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS DNA GLYCOSYLASE COMPLEX, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.COSTE,S.GOFFINONT,B.CASTAING REVDAT 2 24-JAN-24 6RP0 1 REMARK REVDAT 1 15-APR-20 6RP0 0 JRNL AUTH C.RIEUX,S.GOFFINONT,F.COSTE,Z.TBER,J.CROS,V.ROY,M.GUERIN, JRNL AUTH 2 V.GAUDON,S.BOURG,A.BIELA,V.AUCAGNE,L.AGROFOGLIO,N.GARNIER, JRNL AUTH 3 B.CASTAING JRNL TITL THIOPURINE DERIVATIVE-INDUCED FPG/NEI DNA GLYCOSYLASE JRNL TITL 2 INHIBITION: STRUCTURAL, DYNAMIC AND FUNCTIONAL INSIGHTS. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 32192183 JRNL DOI 10.3390/IJMS21062058 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 54226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5774 - 5.9984 0.99 2693 148 0.1474 0.1655 REMARK 3 2 5.9984 - 4.7633 0.99 2691 139 0.1289 0.1604 REMARK 3 3 4.7633 - 4.1618 1.00 2739 132 0.1019 0.1171 REMARK 3 4 4.1618 - 3.7816 0.99 2724 139 0.1222 0.1642 REMARK 3 5 3.7816 - 3.5107 1.00 2696 151 0.1312 0.1869 REMARK 3 6 3.5107 - 3.3038 1.00 2727 150 0.1371 0.1664 REMARK 3 7 3.3038 - 3.1384 1.00 2728 136 0.1699 0.2290 REMARK 3 8 3.1384 - 3.0018 1.00 2709 157 0.1850 0.2275 REMARK 3 9 3.0018 - 2.8863 1.00 2697 139 0.2079 0.2298 REMARK 3 10 2.8863 - 2.7867 0.99 2693 148 0.2132 0.3028 REMARK 3 11 2.7867 - 2.6996 0.99 2678 168 0.2248 0.2500 REMARK 3 12 2.6996 - 2.6224 0.99 2738 124 0.2250 0.2621 REMARK 3 13 2.6224 - 2.5534 0.99 2730 141 0.2440 0.3280 REMARK 3 14 2.5534 - 2.4911 0.99 2691 149 0.2362 0.3016 REMARK 3 15 2.4911 - 2.4345 1.00 2754 132 0.2427 0.2829 REMARK 3 16 2.4345 - 2.3827 0.99 2703 157 0.2483 0.3134 REMARK 3 17 2.3827 - 2.3350 0.99 2726 128 0.2660 0.3206 REMARK 3 18 2.3350 - 2.2910 0.99 2678 127 0.2814 0.2952 REMARK 3 19 2.2910 - 2.2501 0.99 2744 122 0.2904 0.3241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2923 REMARK 3 ANGLE : 1.181 4081 REMARK 3 CHIRALITY : 0.044 462 REMARK 3 PLANARITY : 0.005 398 REMARK 3 DIHEDRAL : 20.137 1145 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1285 3.1437 -16.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.4021 T22: 0.3597 REMARK 3 T33: 0.5310 T12: 0.0573 REMARK 3 T13: 0.0471 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 6.0149 L22: 6.1931 REMARK 3 L33: 4.3610 L12: 2.3200 REMARK 3 L13: -2.2261 L23: -2.6990 REMARK 3 S TENSOR REMARK 3 S11: -0.1482 S12: 0.2893 S13: -0.5695 REMARK 3 S21: -0.3221 S22: 0.0419 S23: -0.6026 REMARK 3 S31: 0.3122 S32: 0.1476 S33: 0.1593 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0952 4.2714 -5.7795 REMARK 3 T TENSOR REMARK 3 T11: 0.2715 T22: 0.4830 REMARK 3 T33: 0.3716 T12: 0.0037 REMARK 3 T13: -0.0382 T23: 0.0654 REMARK 3 L TENSOR REMARK 3 L11: 1.3860 L22: 7.4342 REMARK 3 L33: 4.7155 L12: 0.8426 REMARK 3 L13: -1.2933 L23: 2.5660 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: -0.2986 S13: -0.0141 REMARK 3 S21: 0.5517 S22: 0.1016 S23: 0.3160 REMARK 3 S31: 0.3195 S32: -0.1933 S33: -0.0065 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9493 5.4720 -15.9468 REMARK 3 T TENSOR REMARK 3 T11: 0.2413 T22: 0.3797 REMARK 3 T33: 0.3380 T12: -0.0796 REMARK 3 T13: -0.0531 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.0892 L22: 1.9208 REMARK 3 L33: 3.6312 L12: -0.2659 REMARK 3 L13: -1.9723 L23: -0.8212 REMARK 3 S TENSOR REMARK 3 S11: -0.1922 S12: 0.2650 S13: -0.3851 REMARK 3 S21: -0.1578 S22: 0.0774 S23: 0.2695 REMARK 3 S31: 0.3611 S32: -0.6161 S33: 0.1365 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1357 7.8115 -2.6287 REMARK 3 T TENSOR REMARK 3 T11: 0.3561 T22: 0.4360 REMARK 3 T33: 0.3799 T12: -0.0328 REMARK 3 T13: -0.0725 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.3236 L22: 4.5217 REMARK 3 L33: 4.2146 L12: -0.5669 REMARK 3 L13: -0.4242 L23: -2.7814 REMARK 3 S TENSOR REMARK 3 S11: 0.1507 S12: -0.3231 S13: -0.1100 REMARK 3 S21: 0.6960 S22: -0.2123 S23: -0.0408 REMARK 3 S31: -0.1029 S32: 0.4569 S33: 0.0887 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7806 9.8151 -17.2986 REMARK 3 T TENSOR REMARK 3 T11: 0.2642 T22: 0.4010 REMARK 3 T33: 0.3578 T12: 0.0100 REMARK 3 T13: -0.0519 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.6080 L22: 1.9046 REMARK 3 L33: 2.7374 L12: 1.1577 REMARK 3 L13: -0.6676 L23: -0.8484 REMARK 3 S TENSOR REMARK 3 S11: -0.1667 S12: 0.1389 S13: -0.2508 REMARK 3 S21: -0.1103 S22: 0.1324 S23: -0.1388 REMARK 3 S31: 0.3335 S32: -0.1974 S33: -0.0078 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3778 22.9669 -30.7765 REMARK 3 T TENSOR REMARK 3 T11: 0.2735 T22: 0.3478 REMARK 3 T33: 0.3455 T12: -0.0611 REMARK 3 T13: 0.0135 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 4.6990 L22: 4.5844 REMARK 3 L33: 6.0348 L12: 1.0136 REMARK 3 L13: -0.3568 L23: 0.7287 REMARK 3 S TENSOR REMARK 3 S11: -0.1666 S12: 0.2298 S13: 0.0702 REMARK 3 S21: -0.4226 S22: 0.1446 S23: -0.2142 REMARK 3 S31: -0.4745 S32: 0.2235 S33: 0.0521 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1634 12.5429 -31.1781 REMARK 3 T TENSOR REMARK 3 T11: 0.3034 T22: 0.5078 REMARK 3 T33: 0.5605 T12: 0.0078 REMARK 3 T13: 0.0945 T23: -0.0764 REMARK 3 L TENSOR REMARK 3 L11: 3.3393 L22: 6.8505 REMARK 3 L33: 7.9640 L12: 2.1596 REMARK 3 L13: -2.7609 L23: -5.7041 REMARK 3 S TENSOR REMARK 3 S11: -0.2231 S12: 0.3495 S13: -0.6816 REMARK 3 S21: -0.6447 S22: -0.2877 S23: -0.5589 REMARK 3 S31: 0.7643 S32: 0.5589 S33: 0.5613 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4339 9.5659 -13.9538 REMARK 3 T TENSOR REMARK 3 T11: 0.4260 T22: 0.7654 REMARK 3 T33: 0.8719 T12: -0.0157 REMARK 3 T13: -0.0770 T23: 0.1680 REMARK 3 L TENSOR REMARK 3 L11: 5.6070 L22: 8.0452 REMARK 3 L33: 0.0128 L12: 6.6148 REMARK 3 L13: -0.1332 L23: -0.1814 REMARK 3 S TENSOR REMARK 3 S11: 0.3872 S12: -0.7824 S13: -1.1036 REMARK 3 S21: 0.2590 S22: -0.7903 S23: -1.1848 REMARK 3 S31: 0.1276 S32: 0.4126 S33: 0.4625 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1566 25.8904 -20.0792 REMARK 3 T TENSOR REMARK 3 T11: 0.3723 T22: 0.6232 REMARK 3 T33: 0.6846 T12: -0.1456 REMARK 3 T13: -0.0210 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.2522 L22: 3.3022 REMARK 3 L33: 6.1514 L12: 1.5794 REMARK 3 L13: 0.4793 L23: -0.9020 REMARK 3 S TENSOR REMARK 3 S11: -0.2422 S12: 0.2235 S13: -0.1565 REMARK 3 S21: -0.3023 S22: -0.1172 S23: -0.9783 REMARK 3 S31: -0.3316 S32: 1.0652 S33: 0.2737 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7154 31.2410 -11.7905 REMARK 3 T TENSOR REMARK 3 T11: 0.4986 T22: 0.4917 REMARK 3 T33: 0.4674 T12: 0.0034 REMARK 3 T13: -0.0330 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 3.1209 L22: 1.9143 REMARK 3 L33: 3.8009 L12: 0.6089 REMARK 3 L13: 0.1317 L23: 0.2092 REMARK 3 S TENSOR REMARK 3 S11: 0.2007 S12: -0.2515 S13: 0.3593 REMARK 3 S21: -0.1910 S22: -0.1558 S23: 0.2267 REMARK 3 S31: -0.8274 S32: -0.0972 S33: -0.0291 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0939 33.9149 -19.4550 REMARK 3 T TENSOR REMARK 3 T11: 0.6652 T22: 0.5287 REMARK 3 T33: 0.4688 T12: 0.1426 REMARK 3 T13: -0.0905 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 3.4493 L22: 5.1560 REMARK 3 L33: 7.5210 L12: 4.1041 REMARK 3 L13: -5.0112 L23: -6.1295 REMARK 3 S TENSOR REMARK 3 S11: 0.7759 S12: -0.0822 S13: -0.0823 REMARK 3 S21: 0.0542 S22: -0.3759 S23: 0.7877 REMARK 3 S31: -0.1749 S32: 0.4293 S33: -0.1837 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 23 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5505 25.5545 0.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.4709 T22: 0.4732 REMARK 3 T33: 0.5794 T12: -0.0425 REMARK 3 T13: -0.1123 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 5.4381 L22: 5.3038 REMARK 3 L33: 5.6059 L12: 5.3261 REMARK 3 L13: 3.3274 L23: 2.6852 REMARK 3 S TENSOR REMARK 3 S11: -0.2958 S12: -1.0964 S13: -0.1186 REMARK 3 S21: 0.3362 S22: 0.0425 S23: -1.1647 REMARK 3 S31: -0.4716 S32: -0.0032 S33: 0.1892 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7598 27.8370 6.4436 REMARK 3 T TENSOR REMARK 3 T11: 1.0551 T22: 1.2819 REMARK 3 T33: 1.1006 T12: -0.1935 REMARK 3 T13: -0.2193 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 6.5886 L22: 7.7934 REMARK 3 L33: 2.3540 L12: 3.4048 REMARK 3 L13: 3.5824 L23: 1.6075 REMARK 3 S TENSOR REMARK 3 S11: -1.0195 S12: 1.1483 S13: -1.9909 REMARK 3 S21: 0.7184 S22: 1.2571 S23: -0.1197 REMARK 3 S31: -1.6069 S32: 0.1159 S33: -0.2339 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29044 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 47.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PM5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, CITRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.86300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.09000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.93150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.09000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.79450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.09000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.09000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.93150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.09000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.09000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.79450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.86300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 219 REMARK 465 ARG A 220 REMARK 465 THR A 221 REMARK 465 TYR A 222 REMARK 465 SER A 223 REMARK 465 DC F 101 REMARK 465 DT F 102 REMARK 465 DC F 103 REMARK 465 DT F 104 REMARK 465 DT F 105 REMARK 465 DT F 106 REMARK 465 3DR F 107 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LYS A 15 CD CE NZ REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 42 CD CE NZ REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 LYS A 130 CD CE NZ REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 213 CD CE NZ REMARK 470 LYS A 230 CD CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 SER A 246 OG REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 256 CE NZ REMARK 470 DT F 112 O4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 13 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 74 -120.96 48.97 REMARK 500 GLU A 76 12.46 -141.39 REMARK 500 ASP A 107 105.01 -161.11 REMARK 500 ARG A 247 52.27 -61.19 REMARK 500 CYS A 248 -28.66 -141.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5JL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 DBREF1 6RP0 A 1 271 UNP A0A165FVI1_LACLC DBREF2 6RP0 A A0A165FVI1 2 272 DBREF 6RP0 B 1 14 PDB 6RP0 6RP0 1 14 DBREF 6RP0 C 15 28 PDB 6RP0 6RP0 15 28 DBREF 6RP0 F 101 114 PDB 6RP0 6RP0 101 114 SEQRES 1 A 271 PRO GLU LEU PRO GLU VAL GLU THR VAL ARG ARG GLU LEU SEQRES 2 A 271 GLU LYS ARG ILE VAL GLY GLN LYS ILE ILE SER ILE GLU SEQRES 3 A 271 ALA THR TYR PRO ARG MET VAL LEU THR GLY PHE GLU GLN SEQRES 4 A 271 LEU LYS LYS GLU LEU THR GLY LYS THR ILE GLN GLY ILE SEQRES 5 A 271 SER ARG ARG GLY LYS TYR LEU ILE PHE GLU ILE GLY ASP SEQRES 6 A 271 ASP PHE ARG LEU ILE SER HIS LEU ARG MET GLU GLY LYS SEQRES 7 A 271 TYR ARG LEU ALA THR LEU ASP ALA PRO ARG GLU LYS HIS SEQRES 8 A 271 ASP HIS LEU THR MET LYS PHE ALA ASP GLY GLN LEU ILE SEQRES 9 A 271 TYR ALA ASP VAL ARG LYS PHE GLY THR TRP GLU LEU ILE SEQRES 10 A 271 SER THR ASP GLN VAL LEU PRO TYR PHE LEU LYS LYS LYS SEQRES 11 A 271 ILE GLY PRO GLU PRO THR TYR GLU ASP PHE ASP GLU LYS SEQRES 12 A 271 LEU PHE ARG GLU LYS LEU ARG LYS SER THR LYS LYS ILE SEQRES 13 A 271 LYS PRO TYR LEU LEU GLU GLN THR LEU VAL ALA GLY LEU SEQRES 14 A 271 GLY ASN ILE TYR VAL ASP GLU VAL LEU TRP LEU ALA LYS SEQRES 15 A 271 ILE HIS PRO GLU LYS GLU THR ASN GLN LEU ILE GLU SER SEQRES 16 A 271 SER ILE HIS LEU LEU HIS ASP SER ILE ILE GLU ILE LEU SEQRES 17 A 271 GLN LYS ALA ILE LYS LEU GLY GLY SER SER ILE ARG THR SEQRES 18 A 271 TYR SER ALA LEU GLY SER THR GLY LYS MET GLN ASN GLU SEQRES 19 A 271 LEU GLN VAL TYR GLY LYS THR GLY GLU LYS CYS SER ARG SEQRES 20 A 271 CYS GLY ALA GLU ILE GLN LYS ILE LYS VAL ALA GLY ARG SEQRES 21 A 271 GLY THR HIS PHE CYS PRO VAL CYS GLN GLN LYS SEQRES 1 B 14 DC DT DC DT DT DT 3DR DT DT DT DC DT DC SEQRES 2 B 14 DG SEQRES 1 C 14 DG DC DG DA DG DA DA DA DC DA DA DA DG SEQRES 2 C 14 DA SEQRES 1 F 14 DC DT DC DT DT DT 3DR DT DT DT DC DT DC SEQRES 2 F 14 DG HET 3DR B 7 11 HET 5JL A 301 12 HET GOL A 302 6 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM 5JL 2,8-DITHIOXO-1,2,3,7,8,9-HEXAHYDRO-6H-PURIN-6-ONE HETNAM GOL GLYCEROL HETSYN 3DR ABASIC DIDEOXYRIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 3DR C5 H11 O6 P FORMUL 5 5JL C5 H4 N4 O S2 FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *126(H2 O) HELIX 1 AA1 GLU A 2 VAL A 18 1 17 HELIX 2 AA2 TYR A 29 VAL A 33 5 5 HELIX 3 AA3 GLY A 36 THR A 45 1 10 HELIX 4 AA4 GLN A 121 LYS A 129 1 9 HELIX 5 AA5 ASP A 141 LYS A 151 1 11 HELIX 6 AA6 LYS A 155 LEU A 161 1 7 HELIX 7 AA7 GLY A 170 ALA A 181 1 12 HELIX 8 AA8 GLU A 188 LEU A 192 5 5 HELIX 9 AA9 ILE A 193 LEU A 214 1 22 HELIX 10 AB1 LYS A 230 LEU A 235 5 6 SHEET 1 AA1 4 SER A 24 ALA A 27 0 SHEET 2 AA1 4 ASP A 92 LYS A 97 -1 O LYS A 97 N SER A 24 SHEET 3 AA1 4 GLN A 102 ALA A 106 -1 O TYR A 105 N HIS A 93 SHEET 4 AA1 4 LYS A 78 ALA A 82 -1 N LYS A 78 O ALA A 106 SHEET 1 AA2 4 ILE A 49 ARG A 55 0 SHEET 2 AA2 4 TYR A 58 ILE A 63 -1 O GLU A 62 N GLN A 50 SHEET 3 AA2 4 PHE A 67 HIS A 72 -1 O LEU A 69 N PHE A 61 SHEET 4 AA2 4 THR A 113 SER A 118 -1 O GLU A 115 N ILE A 70 SHEET 1 AA3 2 GLN A 253 VAL A 257 0 SHEET 2 AA3 2 ARG A 260 PHE A 264 -1 O PHE A 264 N GLN A 253 SSBOND 1 CYS A 245 CYS A 265 1555 1555 2.04 LINK O3' DT B 6 P 3DR B 7 1555 1555 1.61 LINK O3' 3DR B 7 P DT B 8 1555 1555 1.60 SITE 1 AC1 10 LYS A 57 LEU A 161 ARG A 260 HOH A 419 SITE 2 AC1 10 HOH A 434 HOH A 445 DT B 8 DT B 9 SITE 3 AC1 10 DT B 10 HOH B 107 SITE 1 AC2 9 TYR A 58 HIS A 72 ARG A 74 THR A 113 SITE 2 AC2 9 GLU A 115 TYR A 125 LYS A 129 DT B 9 SITE 3 AC2 9 DT B 10 CRYST1 92.180 92.180 139.726 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007157 0.00000