HEADER IMMUNE SYSTEM 14-MAY-19 6RPA TITLE CRYSTAL STRUCTURE OF THE T-CELL RECEPTOR NYE_S2 BOUND TO HLA A2*01- TITLE 2 SLLMWITQV COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MHC CLASS I ANTIGEN A*2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HETEROCLITIC NY-ESO-1 157-165 PEPTIDE; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: T-CELL RECEPTOR ALPHA CHAIN; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: T-CELL RECEPTOR BETA CHAIN; COMPND 20 CHAIN: E; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A, HLAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 MOL_ID: 5; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS T-CELL RECEPTOR, PEPTIDE-HUMAN LEUKOCYTE ANTIGEN COMPLEX, NY-ESO-1, KEYWDS 2 CANCER TESTIS ANTIGEN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.H.COLES,R.MULVANEY,S.MALLA,A.LLOYD,K.SMITH,F.CHESTER,A.KNOX, AUTHOR 2 A.R.STACEY,J.DUKES,E.BASTON,S.GRIFFIN,A.VUIDEPOT,B.K.JAKOBSEN, AUTHOR 3 S.HARPER REVDAT 4 24-JAN-24 6RPA 1 REMARK REVDAT 3 08-APR-20 6RPA 1 JRNL REVDAT 2 11-MAR-20 6RPA 1 JRNL REVDAT 1 15-JAN-20 6RPA 0 JRNL AUTH C.H.COLES,R.M.MULVANEY,S.MALLA,A.WALKER,K.J.SMITH,A.LLOYD, JRNL AUTH 2 K.L.LOWE,M.L.MCCULLY,R.MARTINEZ HAGUE,M.ALEKSIC,J.HARPER, JRNL AUTH 3 S.J.PASTON,Z.DONNELLAN,F.CHESTER,K.WIEDERHOLD,R.A.ROBINSON, JRNL AUTH 4 A.KNOX,A.R.STACEY,J.DUKES,E.BASTON,S.GRIFFIN,B.K.JAKOBSEN, JRNL AUTH 5 A.VUIDEPOT,S.HARPER JRNL TITL TCRS WITH DISTINCT SPECIFICITY PROFILES USE DIFFERENT JRNL TITL 2 BINDING MODES TO ENGAGE AN IDENTICAL PEPTIDE-HLA COMPLEX. JRNL REF J IMMUNOL. V. 204 1943 2020 JRNL REFN ESSN 1550-6606 JRNL PMID 32102902 JRNL DOI 10.4049/JIMMUNOL.1900915 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 37679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1945 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2745 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.4290 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.4350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.15000 REMARK 3 B22 (A**2) : 3.12000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.466 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.314 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.384 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.147 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6444 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5656 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8752 ; 1.155 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13157 ; 0.846 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 776 ; 6.076 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 322 ;33.197 ;24.006 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1036 ;14.575 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;13.361 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 932 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7195 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1370 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3131 ; 3.256 ; 8.246 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3130 ; 3.253 ; 8.245 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3898 ; 5.427 ;12.350 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3899 ; 5.427 ;12.351 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3313 ; 2.606 ; 8.321 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3314 ; 2.605 ; 8.322 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4855 ; 4.541 ;12.424 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 23647 ; 9.727 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 23645 ; 9.727 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292100909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.5.436-G557F8872-DIALS-1.7 REMARK 200 DATA SCALING SOFTWARE : XIA2 0.5.436-G557F8872-DIALS-1.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37679 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 66.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.660 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.94 REMARK 200 R MERGE FOR SHELL (I) : 2.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 5E00 (CHAINS A AND B), 3REV (CHAIN A) AND 4DZB REMARK 200 (CHAIN B) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M SODIUM/POTASSIUM PHOSPHATE, 20 REMARK 280 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.58000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.58000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 465 MET D 0 REMARK 465 SER D 145 REMARK 465 SER D 146 REMARK 465 ASP D 147 REMARK 465 THR D 160 REMARK 465 ASN D 161 REMARK 465 VAL D 162 REMARK 465 SER D 163 REMARK 465 GLN D 164 REMARK 465 SER D 165 REMARK 465 LYS D 166 REMARK 465 MET D 180 REMARK 465 ARG D 181 REMARK 465 SER D 182 REMARK 465 MET D 183 REMARK 465 ASP D 184 REMARK 465 TRP D 193 REMARK 465 SER D 194 REMARK 465 ASN D 195 REMARK 465 LYS D 196 REMARK 465 SER D 197 REMARK 465 ASP D 198 REMARK 465 PHE D 199 REMARK 465 ALA D 200 REMARK 465 CYS D 201 REMARK 465 ALA D 202 REMARK 465 ASN D 203 REMARK 465 ALA D 204 REMARK 465 PHE D 205 REMARK 465 ASN D 206 REMARK 465 ASN D 207 REMARK 465 SER D 208 REMARK 465 ILE D 209 REMARK 465 ILE D 210 REMARK 465 PRO D 211 REMARK 465 GLU D 212 REMARK 465 ASP D 213 REMARK 465 THR D 214 REMARK 465 PHE D 215 REMARK 465 PHE D 216 REMARK 465 PRO D 217 REMARK 465 SER D 218 REMARK 465 PRO D 219 REMARK 465 GLU D 220 REMARK 465 SER D 221 REMARK 465 SER D 222 REMARK 465 MET E 0 REMARK 465 TRP E 236 REMARK 465 THR E 237 REMARK 465 GLN E 238 REMARK 465 ASP E 239 REMARK 465 ARG E 240 REMARK 465 TRP E 253 REMARK 465 GLY E 254 REMARK 465 ARG E 255 REMARK 465 ALA E 256 REMARK 465 ASP E 257 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -118.15 48.23 REMARK 500 ASN B 42 60.32 60.86 REMARK 500 TRP B 60 -1.67 77.88 REMARK 500 ASP B 98 48.64 -106.18 REMARK 500 LEU D 53 -75.68 -102.31 REMARK 500 ILE D 57 -75.09 -86.39 REMARK 500 PHE D 87 66.73 -154.50 REMARK 500 ASP D 134 67.28 -155.40 REMARK 500 SER E 100 -170.42 -175.05 REMARK 500 PRO E 165 -168.32 -75.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 6RPA A 1 276 UNP P01892 1A02_HUMAN 25 300 DBREF 6RPA B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 6RPA C 1 9 PDB 6RPA 6RPA 1 9 DBREF 6RPA D 0 222 PDB 6RPA 6RPA 0 222 DBREF 6RPA E 0 257 PDB 6RPA 6RPA 0 257 SEQADV 6RPA MET A 0 UNP P01892 INITIATING METHIONINE SEQADV 6RPA MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 277 MET GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SEQRES 2 A 277 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 A 277 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 277 ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 A 277 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR SEQRES 6 A 277 ARG LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP SEQRES 7 A 277 LEU GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA SEQRES 8 A 277 GLY SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL SEQRES 9 A 277 GLY SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR SEQRES 10 A 277 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP SEQRES 11 A 277 LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR SEQRES 12 A 277 THR LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN SEQRES 13 A 277 LEU ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU SEQRES 14 A 277 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 A 277 THR ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SEQRES 16 A 277 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER SEQRES 17 A 277 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 A 277 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 A 277 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 277 VAL VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS SEQRES 21 A 277 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 A 277 ARG TRP GLU PRO SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 SER LEU LEU MET TRP ILE THR GLN VAL SEQRES 1 D 212 MET ALA GLN SER VAL ALA GLN PRO GLU ASP GLN VAL ASN SEQRES 2 D 212 VAL ALA GLU GLY ASN PRO LEU THR VAL LYS CYS THR TYR SEQRES 3 D 212 SER VAL SER GLY ASN PRO TYR LEU PHE TRP TYR VAL GLN SEQRES 4 D 212 TYR PRO ASN ARG GLY LEU GLN PHE LEU LEU LYS TYR ILE SEQRES 5 D 212 THR GLY ASP ASN LEU VAL LYS GLY SER TYR GLY PHE GLU SEQRES 6 D 212 ALA GLU PHE ASN LYS SER GLN THR SER PHE HIS LEU LYS SEQRES 7 D 212 LYS PRO SER ALA LEU VAL SER ASP SER ALA LEU TYR PHE SEQRES 8 D 212 CYS ALA VAL ARG ASP ILE ASN SER GLY ALA GLY SER TYR SEQRES 9 D 212 GLN LEU THR PHE GLY LYS GLY THR LYS LEU SER VAL ILE SEQRES 10 D 212 PRO ASN ILE GLN ASN PRO ASP PRO ALA VAL TYR GLN LEU SEQRES 11 D 212 ARG ASP SER ASP SER SER ASP LYS SER VAL CYS LEU PHE SEQRES 12 D 212 THR ASP PHE ASP SER GLN THR ASN VAL SER GLN SER LYS SEQRES 13 D 212 ASP SER ASP VAL TYR ILE THR ASP LYS CYS VAL LEU ASP SEQRES 14 D 212 MET ARG SER MET ASP PHE LYS SER ASN SER ALA VAL ALA SEQRES 15 D 212 TRP SER ASN LYS SER ASP PHE ALA CYS ALA ASN ALA PHE SEQRES 16 D 212 ASN ASN SER ILE ILE PRO GLU ASP THR PHE PHE PRO SER SEQRES 17 D 212 PRO GLU SER SER SEQRES 1 E 246 MET SER ALA VAL ILE SER GLN LYS PRO SER ARG ASP ILE SEQRES 2 E 246 LYS GLN ARG GLY THR SER LEU THR ILE GLN CYS GLN VAL SEQRES 3 E 246 ASP SER GLN VAL THR MET MET PHE TRP TYR ARG GLN GLN SEQRES 4 E 246 PRO GLY GLN SER LEU THR LEU ILE ALA THR ALA ASN GLN SEQRES 5 E 246 GLY SER GLU ALA THR TYR GLU SER GLY PHE VAL ILE ASP SEQRES 6 E 246 LYS PHE PRO ILE SER ARG PRO ASN LEU THR PHE SER THR SEQRES 7 E 246 LEU THR VAL SER ASN MET SER PRO GLU ASP SER SER ILE SEQRES 8 E 246 TYR LEU CYS SER VAL GLY GLY SER GLY GLY ALA ASP THR SEQRES 9 E 246 GLN TYR PHE GLY PRO GLY THR ARG LEU THR VAL LEU GLU SEQRES 10 E 246 ASP LEU LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE SEQRES 11 E 246 GLU PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA SEQRES 12 E 246 THR LEU VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS SEQRES 13 E 246 VAL GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SEQRES 14 E 246 SER GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN SEQRES 15 E 246 PRO ALA LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG SEQRES 16 E 246 LEU ARG VAL SER ALA THR PHE TRP GLN ASP PRO ARG ASN SEQRES 17 E 246 HIS PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU SEQRES 18 E 246 ASN ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR SEQRES 19 E 246 GLN ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP FORMUL 6 HOH *49(H2 O) HELIX 1 AA1 ALA A 49 GLN A 54 1 6 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 HIS A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLN A 253 GLN A 255 5 3 HELIX 8 AA8 LEU D 95 SER D 99 5 5 HELIX 9 AA9 SER E 95 SER E 99 5 5 HELIX 10 AB1 ASP E 129 VAL E 133 5 5 HELIX 11 AB2 SER E 144 GLN E 152 1 9 HELIX 12 AB3 ALA E 211 ASP E 216 1 6 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O TYR A 99 N TYR A 7 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O GLN A 115 N MET A 98 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O TYR A 123 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 ALA A 193 0 SHEET 2 AA2 4 ALA A 199 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 VAL A 249 -1 O VAL A 249 N ALA A 199 SHEET 4 AA2 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA3 3 GLU A 222 ASP A 223 0 SHEET 2 AA3 3 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA3 3 TYR A 257 GLN A 262 -1 O THR A 258 N GLN A 218 SHEET 1 AA4 4 LYS B 6 SER B 11 0 SHEET 2 AA4 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA4 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA4 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA5 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA6 4 GLU B 44 ARG B 45 0 SHEET 2 AA6 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA6 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 AA6 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA7 2 GLN D 2 ALA D 5 0 SHEET 2 AA7 2 THR D 24 VAL D 27 -1 O SER D 26 N SER D 3 SHEET 1 AA8 5 GLN D 10 ALA D 14 0 SHEET 2 AA8 5 THR D 122 ILE D 127 1 O SER D 125 N VAL D 11 SHEET 3 AA8 5 ALA D 100 ASP D 108 -1 N ALA D 100 O LEU D 124 SHEET 4 AA8 5 PRO D 37 GLN D 44 -1 N TYR D 42 O PHE D 103 SHEET 5 AA8 5 GLN D 51 TYR D 56 -1 O GLN D 51 N VAL D 43 SHEET 1 AA9 4 GLN D 10 ALA D 14 0 SHEET 2 AA9 4 THR D 122 ILE D 127 1 O SER D 125 N VAL D 11 SHEET 3 AA9 4 ALA D 100 ASP D 108 -1 N ALA D 100 O LEU D 124 SHEET 4 AA9 4 THR D 117 PHE D 118 -1 O THR D 117 N VAL D 106 SHEET 1 AB1 4 LEU D 19 VAL D 21 0 SHEET 2 AB1 4 LEU D 89 LYS D 91 -1 O LEU D 89 N VAL D 21 SHEET 3 AB1 4 GLU D 77 GLU D 79 -1 N GLU D 77 O LYS D 90 SHEET 4 AB1 4 LEU D 64 LYS D 66 -1 N VAL D 65 O ALA D 78 SHEET 1 AB2 6 SER D 149 THR D 154 0 SHEET 2 AB2 6 ALA D 136 ASP D 142 -1 N LEU D 140 O VAL D 150 SHEET 3 AB2 6 GLU E 137 GLU E 142 -1 O GLU E 142 N ARG D 141 SHEET 4 AB2 6 LYS E 153 PHE E 163 -1 O VAL E 157 N PHE E 141 SHEET 5 AB2 6 TYR E 201 SER E 210 -1 O LEU E 207 N LEU E 156 SHEET 6 AB2 6 VAL E 183 THR E 185 -1 N CYS E 184 O ARG E 206 SHEET 1 AB3 6 SER D 149 THR D 154 0 SHEET 2 AB3 6 ALA D 136 ASP D 142 -1 N LEU D 140 O VAL D 150 SHEET 3 AB3 6 GLU E 137 GLU E 142 -1 O GLU E 142 N ARG D 141 SHEET 4 AB3 6 LYS E 153 PHE E 163 -1 O VAL E 157 N PHE E 141 SHEET 5 AB3 6 TYR E 201 SER E 210 -1 O LEU E 207 N LEU E 156 SHEET 6 AB3 6 LEU E 190 LYS E 191 -1 N LEU E 190 O ALA E 202 SHEET 1 AB4 2 CYS D 176 VAL D 177 0 SHEET 2 AB4 2 ASN D 188 SER D 189 -1 O SER D 189 N CYS D 176 SHEET 1 AB5 4 ILE E 4 LYS E 7 0 SHEET 2 AB5 4 LEU E 19 VAL E 25 -1 O GLN E 24 N SER E 5 SHEET 3 AB5 4 PHE E 86 VAL E 91 -1 O LEU E 89 N ILE E 21 SHEET 4 AB5 4 ILE E 78 SER E 79 -1 N SER E 79 O THR E 88 SHEET 1 AB6 6 ARG E 10 GLN E 14 0 SHEET 2 AB6 6 ARG E 123 LEU E 127 1 O THR E 125 N LYS E 13 SHEET 3 AB6 6 SER E 100 GLY E 107 -1 N SER E 100 O LEU E 124 SHEET 4 AB6 6 MET E 38 GLN E 44 -1 N TYR E 42 O LEU E 103 SHEET 5 AB6 6 LEU E 50 THR E 55 -1 O ILE E 53 N TRP E 41 SHEET 6 AB6 6 THR E 66 TYR E 67 -1 O THR E 66 N THR E 55 SHEET 1 AB7 4 LYS E 177 VAL E 179 0 SHEET 2 AB7 4 VAL E 168 VAL E 174 -1 N VAL E 174 O LYS E 177 SHEET 3 AB7 4 PHE E 221 PHE E 227 -1 O GLN E 224 N SER E 171 SHEET 4 AB7 4 GLN E 246 ALA E 252 -1 O GLN E 246 N PHE E 227 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS D 23 CYS D 104 1555 1555 2.03 SSBOND 5 CYS D 176 CYS E 184 1555 1555 2.03 SSBOND 6 CYS E 23 CYS E 104 1555 1555 2.03 SSBOND 7 CYS E 158 CYS E 223 1555 1555 2.04 CISPEP 1 TYR A 209 PRO A 210 0 1.50 CISPEP 2 HIS B 31 PRO B 32 0 2.64 CISPEP 3 LYS E 7 PRO E 8 0 7.17 CISPEP 4 TYR E 164 PRO E 165 0 -1.75 CRYST1 173.160 84.250 111.510 90.00 129.81 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005775 0.000000 0.004813 0.00000 SCALE2 0.000000 0.011869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011674 0.00000