HEADER ANTIMICROBIAL PROTEIN 14-MAY-19 6RPN TITLE STRUCTURE OF METALLO BETA LACTAMASE VIM-2 WITH CYCLIC BORONATE APC308. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE VIM-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CLASS B BETA-LACTAMASE,CLASS B CARBAPENEMASE VIM-2,METALLO COMPND 5 BETA LACTAMASE VIM-2,METALLO BETA-LACTAMASE,METALLO-BETA-LACTAMASE COMPND 6 VIM-2,METALLO-BETA-LACTAMASE VIM-2,METTALO-BETA-LACTAMASE VIM-2,VIM-2 COMPND 7 METALLO-BETA-LACTAMASE,VIM-2 PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, BLM, VIM- SOURCE 5 2, VIM-2, PAERUG_P32_LONDON_17_VIM_2_10_11_06255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: LEMO21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINF KEYWDS BETA LACTAMASES, ANTIMICROBIAL RESISTANCE, CYCLIC BORONATE, KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.PARKOVA,A.LUCIC,J.BREM,M.A.MCDONOUGH,G.W.LANGLEY,C.J.SCHOFIELD REVDAT 4 24-JAN-24 6RPN 1 LINK REVDAT 3 24-JUN-20 6RPN 1 JRNL REVDAT 2 15-APR-20 6RPN 1 REMARK FORMUL REVDAT 1 25-MAR-20 6RPN 0 JRNL AUTH A.PARKOVA,A.LUCIC,A.KRAJNC,J.BREM,K.CALVOPINA,G.W.LANGLEY, JRNL AUTH 2 M.A.MCDONOUGH,P.TRAPENCIERIS,C.J.SCHOFIELD JRNL TITL BROAD SPECTRUM BETA-LACTAMASE INHIBITION BY A THIOETHER JRNL TITL 2 SUBSTITUTED BICYCLIC BORONATE. JRNL REF ACS INFECT DIS. V. 6 1398 2020 JRNL REFN ESSN 2373-8227 JRNL PMID 31841636 JRNL DOI 10.1021/ACSINFECDIS.9B00330 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 75114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.450 REMARK 3 FREE R VALUE TEST SET COUNT : 1843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.3436 - 3.3126 1.00 6016 150 0.1221 0.1344 REMARK 3 2 3.3126 - 2.6297 1.00 5935 149 0.1118 0.1250 REMARK 3 3 2.6297 - 2.2974 1.00 5897 149 0.1095 0.1481 REMARK 3 4 2.2974 - 2.0874 1.00 5916 146 0.1122 0.1377 REMARK 3 5 2.0874 - 1.9378 1.00 5865 147 0.1115 0.1506 REMARK 3 6 1.9378 - 1.8236 0.99 5866 150 0.1235 0.1643 REMARK 3 7 1.8236 - 1.7323 0.98 5804 147 0.1290 0.1731 REMARK 3 8 1.7323 - 1.6569 0.97 5717 138 0.1388 0.1576 REMARK 3 9 1.6569 - 1.5931 0.94 5558 150 0.1532 0.1969 REMARK 3 10 1.5931 - 1.5381 0.92 5361 137 0.1694 0.1825 REMARK 3 11 1.5381 - 1.4900 0.90 5266 125 0.1849 0.2408 REMARK 3 12 1.4900 - 1.4474 0.87 5126 138 0.2070 0.2355 REMARK 3 13 1.4474 - 1.4093 0.84 4944 117 0.2311 0.2774 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9112 -5.1524 83.9696 REMARK 3 T TENSOR REMARK 3 T11: 0.1236 T22: 0.1386 REMARK 3 T33: 0.1629 T12: -0.0058 REMARK 3 T13: -0.0314 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 4.3871 L22: 2.1769 REMARK 3 L33: 4.2020 L12: -0.2706 REMARK 3 L13: -3.6839 L23: 0.4903 REMARK 3 S TENSOR REMARK 3 S11: 0.1271 S12: -0.3057 S13: 0.5125 REMARK 3 S21: 0.0467 S22: -0.0115 S23: 0.0469 REMARK 3 S31: -0.3561 S32: 0.2504 S33: -0.1865 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1817 -12.9849 80.2241 REMARK 3 T TENSOR REMARK 3 T11: 0.0416 T22: 0.0497 REMARK 3 T33: 0.0582 T12: 0.0170 REMARK 3 T13: -0.0118 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 2.4433 L22: 2.8738 REMARK 3 L33: 2.2767 L12: 0.6336 REMARK 3 L13: -0.4241 L23: -0.6439 REMARK 3 S TENSOR REMARK 3 S11: -0.0623 S12: -0.0738 S13: 0.0930 REMARK 3 S21: 0.0058 S22: 0.0759 S23: -0.0117 REMARK 3 S31: 0.0465 S32: 0.0719 S33: -0.0104 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9482 -16.9370 83.7710 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.1028 REMARK 3 T33: 0.0987 T12: 0.0026 REMARK 3 T13: -0.0154 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.9906 L22: 4.8360 REMARK 3 L33: 2.3942 L12: -1.1476 REMARK 3 L13: 1.0043 L23: 1.0325 REMARK 3 S TENSOR REMARK 3 S11: -0.1051 S12: -0.1385 S13: 0.1327 REMARK 3 S21: 0.1645 S22: 0.0498 S23: -0.2302 REMARK 3 S31: -0.0935 S32: 0.3295 S33: 0.0154 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1858 -19.3209 78.7419 REMARK 3 T TENSOR REMARK 3 T11: 0.0615 T22: 0.0416 REMARK 3 T33: 0.0648 T12: 0.0113 REMARK 3 T13: 0.0173 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.4402 L22: 1.3681 REMARK 3 L33: 4.5167 L12: -0.6592 REMARK 3 L13: 2.1711 L23: -0.4188 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: -0.0618 S13: -0.0109 REMARK 3 S21: 0.0453 S22: 0.0338 S23: -0.0232 REMARK 3 S31: 0.0091 S32: -0.0068 S33: 0.0325 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5748 -25.9585 73.0572 REMARK 3 T TENSOR REMARK 3 T11: 0.0874 T22: 0.0235 REMARK 3 T33: 0.0744 T12: -0.0087 REMARK 3 T13: 0.0251 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 4.7189 L22: 1.4658 REMARK 3 L33: 2.8255 L12: -0.4273 REMARK 3 L13: 1.1927 L23: 0.6437 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: 0.1338 S13: -0.1341 REMARK 3 S21: -0.0465 S22: 0.0189 S23: -0.0328 REMARK 3 S31: 0.0947 S32: 0.0391 S33: 0.0143 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.7247 -24.0554 74.4383 REMARK 3 T TENSOR REMARK 3 T11: 0.0699 T22: 0.0611 REMARK 3 T33: 0.0611 T12: -0.0160 REMARK 3 T13: -0.0003 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.5994 L22: 2.9370 REMARK 3 L33: 1.2339 L12: -2.6201 REMARK 3 L13: -0.1597 L23: 0.6087 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: 0.0407 S13: -0.3131 REMARK 3 S21: -0.0258 S22: 0.0181 S23: 0.2061 REMARK 3 S31: 0.0622 S32: -0.0178 S33: -0.0035 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.7306 -9.8712 75.9409 REMARK 3 T TENSOR REMARK 3 T11: 0.0496 T22: 0.0548 REMARK 3 T33: 0.0608 T12: 0.0038 REMARK 3 T13: 0.0115 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.8093 L22: 1.4812 REMARK 3 L33: 1.4588 L12: -0.1590 REMARK 3 L13: 0.2772 L23: -0.3055 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0123 S13: 0.0338 REMARK 3 S21: 0.0004 S22: -0.0033 S23: 0.0794 REMARK 3 S31: -0.0423 S32: -0.0724 S33: -0.0006 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6428 -4.1100 83.0994 REMARK 3 T TENSOR REMARK 3 T11: 0.0922 T22: 0.0656 REMARK 3 T33: 0.0796 T12: 0.0092 REMARK 3 T13: 0.0091 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 7.2484 L22: 0.3816 REMARK 3 L33: 3.4882 L12: 1.3810 REMARK 3 L13: -3.9793 L23: -1.1293 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: -0.2614 S13: 0.1942 REMARK 3 S21: 0.0863 S22: -0.0306 S23: 0.0420 REMARK 3 S31: -0.0856 S32: 0.0747 S33: -0.0359 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.6141 1.3388 69.2592 REMARK 3 T TENSOR REMARK 3 T11: 0.0712 T22: 0.0698 REMARK 3 T33: 0.1006 T12: 0.0187 REMARK 3 T13: -0.0017 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 3.5078 L22: 3.7933 REMARK 3 L33: 2.8012 L12: 0.3270 REMARK 3 L13: 1.9556 L23: -1.8980 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.2433 S13: 0.1731 REMARK 3 S21: -0.1598 S22: -0.0085 S23: 0.0401 REMARK 3 S31: -0.1195 S32: -0.1076 S33: 0.0146 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3281 1.4008 65.3354 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.1093 REMARK 3 T33: 0.1210 T12: 0.0272 REMARK 3 T13: -0.0551 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 4.5375 L22: 6.8449 REMARK 3 L33: 6.6777 L12: 2.1296 REMARK 3 L13: -1.6472 L23: -3.2121 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: -0.3242 S13: -0.4136 REMARK 3 S21: 0.1043 S22: -0.1201 S23: -0.0624 REMARK 3 S31: 0.2822 S32: 0.2229 S33: 0.0307 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8106 5.6257 62.6319 REMARK 3 T TENSOR REMARK 3 T11: 0.0772 T22: 0.0595 REMARK 3 T33: 0.0548 T12: -0.0072 REMARK 3 T13: -0.0175 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 7.0051 L22: 2.1307 REMARK 3 L33: 3.7095 L12: 1.3205 REMARK 3 L13: -3.3682 L23: -0.8836 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.1200 S13: -0.0532 REMARK 3 S21: 0.0659 S22: 0.0530 S23: 0.1117 REMARK 3 S31: 0.1170 S32: -0.1034 S33: -0.0144 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8735 14.4853 53.2017 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0493 REMARK 3 T33: 0.0591 T12: -0.0037 REMARK 3 T13: 0.0109 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.0955 L22: 0.7260 REMARK 3 L33: 1.4746 L12: 0.0798 REMARK 3 L13: 0.4686 L23: 0.1083 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.0158 S13: 0.0301 REMARK 3 S21: -0.0022 S22: -0.0086 S23: -0.0614 REMARK 3 S31: -0.0658 S32: 0.0664 S33: 0.0185 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 200 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3460 -0.6020 47.7236 REMARK 3 T TENSOR REMARK 3 T11: 0.0989 T22: 0.0632 REMARK 3 T33: 0.0751 T12: -0.0220 REMARK 3 T13: -0.0222 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.5003 L22: 3.0032 REMARK 3 L33: 1.2352 L12: -1.0722 REMARK 3 L13: 1.1887 L23: -0.3617 REMARK 3 S TENSOR REMARK 3 S11: 0.1066 S12: -0.0072 S13: -0.1968 REMARK 3 S21: 0.0922 S22: 0.0007 S23: 0.0641 REMARK 3 S31: 0.1651 S32: -0.1611 S33: -0.0897 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 230 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6028 -4.1887 48.7201 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.0428 REMARK 3 T33: 0.0790 T12: 0.0236 REMARK 3 T13: -0.0166 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.5200 L22: 1.7529 REMARK 3 L33: 2.2977 L12: 0.8289 REMARK 3 L13: -0.2890 L23: 0.1768 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0683 S13: -0.0636 REMARK 3 S21: -0.0035 S22: 0.0126 S23: -0.0489 REMARK 3 S31: 0.2196 S32: 0.0157 S33: -0.0436 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.3.10 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2.3.10 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.36500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 4BZ3 REMARK 200 REMARK 200 REMARK: ROD SHAPED CRYSTAL ABOUT 100 MICRONS BIG. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 25% PEG 8000, REMARK 280 0.1M TRIS BUFFER, PH 8.25, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.54050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.57750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.54050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.57750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 460 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 742 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 763 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 896 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 PRO A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 VAL A 264 REMARK 465 VAL A 265 REMARK 465 GLU A 266 REMARK 465 GLY B 25 REMARK 465 PRO B 26 REMARK 465 VAL B 27 REMARK 465 ASP B 28 REMARK 465 SER B 29 REMARK 465 SER B 30 REMARK 465 VAL B 264 REMARK 465 VAL B 265 REMARK 465 GLU B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 101 NZ REMARK 470 SER A 263 CA C O CB OG REMARK 470 LYS B 90 CD CE NZ REMARK 470 GLU B 156 CD OE1 OE2 REMARK 470 LYS B 250 CE NZ REMARK 470 SER B 263 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 32 -51.01 -136.93 REMARK 500 ASP A 84 147.42 74.98 REMARK 500 TRP A 87 63.60 69.62 REMARK 500 ALA A 178 -105.90 -153.75 REMARK 500 ASP B 84 144.42 75.68 REMARK 500 TRP B 87 65.74 67.81 REMARK 500 ALA B 178 -108.66 -154.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 757 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 935 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 936 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 937 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 938 DISTANCE = 6.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 508 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 98 OE1 REMARK 620 2 GLU A 98 OE2 46.9 REMARK 620 3 HOH B 880 O 98.0 51.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 99.2 REMARK 620 3 HIS A 179 NE2 99.9 117.4 REMARK 620 4 KDZ A 301 O01 104.3 106.9 124.5 REMARK 620 5 KL8 A 302 O01 161.9 95.4 82.6 60.8 REMARK 620 6 KL8 A 302 O03 100.9 107.5 126.0 3.4 64.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 94.5 REMARK 620 3 HIS A 240 NE2 87.3 109.4 REMARK 620 4 KDZ A 301 O18 161.5 103.5 90.5 REMARK 620 5 KDZ A 301 O23 90.2 138.4 112.1 73.7 REMARK 620 6 KL8 A 302 O18 167.4 97.9 86.6 8.3 82.0 REMARK 620 7 KL8 A 302 O23 91.3 141.9 108.5 72.0 3.9 80.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 HIS A 251 ND1 38.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 509 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 429 O REMARK 620 2 HOH A 742 O 94.2 REMARK 620 3 HOH A 742 O 94.2 0.0 REMARK 620 4 HOH B 745 O 176.7 82.6 82.6 REMARK 620 5 HOH B 813 O 98.0 104.2 104.2 83.4 REMARK 620 6 HOH B 841 O 89.1 169.9 169.9 94.0 84.7 REMARK 620 7 HOH B 896 O 80.8 73.3 73.3 97.7 177.0 97.9 REMARK 620 8 HOH B 896 O 80.7 73.3 73.3 97.7 177.0 97.9 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 NE2 REMARK 620 2 HIS B 116 ND1 99.1 REMARK 620 3 HIS B 179 NE2 99.6 117.6 REMARK 620 4 KDZ B 501 O01 103.6 110.1 122.0 REMARK 620 5 KL8 B 502 O01 102.1 105.5 127.3 5.3 REMARK 620 6 KL8 B 502 O03 164.7 92.7 83.3 62.9 65.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD2 REMARK 620 2 CYS B 198 SG 95.1 REMARK 620 3 HIS B 240 NE2 84.8 109.6 REMARK 620 4 KDZ B 501 O19 160.4 103.8 93.5 REMARK 620 5 KDZ B 501 O23 91.0 139.8 110.5 71.2 REMARK 620 6 KL8 B 502 O19 167.9 96.9 89.6 9.6 80.8 REMARK 620 7 KL8 B 502 O23 91.3 142.0 108.3 70.6 2.3 80.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 153 NE2 REMARK 620 2 HIS B 251 ND1 49.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KDZ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KL8 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KDZ B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KL8 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 510 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FQC RELATED DB: PDB REMARK 900 VIM-2 IN COMPLEX WITH BORONATE OK3 (R)-3-(4-(AMINOMETHYL)BENZAMIDO)- REMARK 900 8-CARBOXY-2,2-DIHYDROXY-3,4-DIHYDRO-2H-BENZO[E][1,2]OXABORININ-2- REMARK 900 UIDE DBREF 6RPN A 27 266 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 DBREF 6RPN B 27 266 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 SEQADV 6RPN GLY A 25 UNP Q9K2N0 EXPRESSION TAG SEQADV 6RPN PRO A 26 UNP Q9K2N0 EXPRESSION TAG SEQADV 6RPN GLY B 25 UNP Q9K2N0 EXPRESSION TAG SEQADV 6RPN PRO B 26 UNP Q9K2N0 EXPRESSION TAG SEQRES 1 A 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 A 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 A 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 A 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 A 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 A 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 A 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 A 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 A 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 A 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 A 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 A 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 A 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 A 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 A 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 A 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 A 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 A 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 A 242 HIS THR ASN ARG SER VAL VAL GLU SEQRES 1 B 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 B 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 B 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 B 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 B 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 B 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 B 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 B 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 B 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 B 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 B 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 B 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 B 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 B 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 B 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 B 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 B 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 B 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 B 242 HIS THR ASN ARG SER VAL VAL GLU HET KDZ A 301 23 HET KL8 A 302 23 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET CL A 306 1 HET CL A 307 1 HET KDZ B 501 23 HET KL8 B 502 23 HET ZN B 503 1 HET ZN B 504 1 HET ZN B 505 1 HET CL B 506 1 HET CL B 507 1 HET MG B 508 1 HET MG B 509 1 HET GOL B 510 6 HETNAM KDZ (3~{R})-2,2-BIS(OXIDANYL)-3-(PHENYLMETHYLSULFANYL)-3,4- HETNAM 2 KDZ DIHYDRO-1,2-BENZOXABORININ-2-IUM-8-CARBOXYLIC ACID HETNAM KL8 (3~{S})-2,2-BIS(OXIDANYL)-3-(PHENYLMETHYLSULFANYL)-3,4- HETNAM 2 KL8 DIHYDRO-1,2-BENZOXABORININ-2-IUM-8-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 KDZ 2(C16 H16 B O5 S 1-) FORMUL 4 KL8 2(C16 H16 B O5 S 1-) FORMUL 5 ZN 6(ZN 2+) FORMUL 8 CL 4(CL 1-) FORMUL 17 MG 2(MG 2+) FORMUL 19 GOL C3 H8 O3 FORMUL 20 HOH *695(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CYS A 198 ILE A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 ASN A 261 1 16 HELIX 9 AA9 THR B 35 ILE B 39 5 5 HELIX 10 AB1 GLY B 88 ILE B 103 1 16 HELIX 11 AB2 HIS B 116 GLY B 121 1 6 HELIX 12 AB3 GLY B 122 ALA B 129 1 8 HELIX 13 AB4 SER B 136 GLY B 147 1 12 HELIX 14 AB5 CYS B 198 ILE B 200 5 3 HELIX 15 AB6 GLU B 218 TYR B 230 1 13 HELIX 16 AB7 LEU B 246 ASN B 261 1 16 SHEET 1 AA1 7 ARG A 45 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ALA A 65 N PHE A 62 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O ILE A 83 N LEU A 72 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O TYR A 134 N ALA A 110 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ASP A 163 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 TYR A 174 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O TYR A 187 N GLU A 171 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 PHE A 235 PRO A 238 1 O PHE A 235 N LEU A 194 SHEET 1 AA3 7 ARG B 45 ALA B 50 0 SHEET 2 AA3 7 VAL B 53 PHE B 62 -1 O ILE B 57 N ARG B 45 SHEET 3 AA3 7 ALA B 65 ASP B 76 -1 O TYR B 67 N GLN B 60 SHEET 4 AA3 7 GLU B 79 ILE B 83 -1 O GLU B 79 N ASP B 76 SHEET 5 AA3 7 VAL B 107 VAL B 111 1 O ARG B 109 N LEU B 82 SHEET 6 AA3 7 ALA B 132 ALA B 135 1 O ALA B 132 N ALA B 110 SHEET 7 AA3 7 HIS B 153 SER B 154 1 O HIS B 153 N THR B 133 SHEET 1 AA4 5 ASP B 163 PHE B 167 0 SHEET 2 AA4 5 VAL B 170 TYR B 174 -1 O LEU B 172 N VAL B 165 SHEET 3 AA4 5 VAL B 185 VAL B 188 -1 O TYR B 187 N GLU B 171 SHEET 4 AA4 5 VAL B 193 GLY B 197 -1 O TYR B 195 N VAL B 186 SHEET 5 AA4 5 PHE B 235 PRO B 238 1 O PHE B 235 N LEU B 194 LINK OE1 GLU A 98 MG MG B 508 1555 2658 2.52 LINK OE2 GLU A 98 MG MG B 508 1555 2658 2.91 LINK NE2 HIS A 114 ZN ZN A 304 1555 1555 2.06 LINK ND1 HIS A 116 ZN ZN A 304 1555 1555 2.02 LINK OD2 ASP A 118 ZN ZN A 305 1555 1555 2.29 LINK NE2 HIS A 153 ZN ZN A 303 1555 1555 2.04 LINK NE2 HIS A 179 ZN ZN A 304 1555 1555 2.00 LINK SG CYS A 198 ZN ZN A 305 1555 1555 2.28 LINK NE2 HIS A 240 ZN ZN A 305 1555 1555 2.02 LINK ND1 HIS A 251 ZN ZN A 303 1555 4558 2.01 LINK O01AKDZ A 301 ZN ZN A 304 1555 1555 1.90 LINK O18AKDZ A 301 ZN ZN A 305 1555 1555 2.21 LINK O23AKDZ A 301 ZN ZN A 305 1555 1555 2.14 LINK O01BKL8 A 302 ZN ZN A 304 1555 1555 2.50 LINK O03BKL8 A 302 ZN ZN A 304 1555 1555 2.11 LINK O18BKL8 A 302 ZN ZN A 305 1555 1555 2.27 LINK O23BKL8 A 302 ZN ZN A 305 1555 1555 1.89 LINK O HOH A 429 MG MG B 509 2658 1555 2.08 LINK O HOH A 742 MG MG B 509 1555 1555 2.39 LINK O HOH A 742 MG MG B 509 2658 1555 2.39 LINK NE2 HIS B 114 ZN ZN B 503 1555 1555 2.08 LINK ND1 HIS B 116 ZN ZN B 503 1555 1555 1.98 LINK OD2 ASP B 118 ZN ZN B 505 1555 1555 2.27 LINK NE2 HIS B 153 ZN ZN B 504 1555 1555 2.01 LINK NE2 HIS B 179 ZN ZN B 503 1555 1555 2.00 LINK SG CYS B 198 ZN ZN B 505 1555 1555 2.28 LINK NE2 HIS B 240 ZN ZN B 505 1555 1555 2.06 LINK ND1 HIS B 251 ZN ZN B 504 1555 4547 2.07 LINK O01AKDZ B 501 ZN ZN B 503 1555 1555 1.85 LINK O19AKDZ B 501 ZN ZN B 505 1555 1555 2.31 LINK O23AKDZ B 501 ZN ZN B 505 1555 1555 2.12 LINK O01BKL8 B 502 ZN ZN B 503 1555 1555 2.24 LINK O03BKL8 B 502 ZN ZN B 503 1555 1555 2.49 LINK O19BKL8 B 502 ZN ZN B 505 1555 1555 2.24 LINK O23BKL8 B 502 ZN ZN B 505 1555 1555 2.00 LINK MG MG B 508 O AHOH B 880 1555 1555 2.11 LINK MG MG B 509 O HOH B 745 1555 1555 2.09 LINK MG MG B 509 O HOH B 813 1555 1555 2.07 LINK MG MG B 509 O HOH B 841 1555 1555 2.05 LINK MG MG B 509 O HOH B 896 1555 1555 2.52 LINK MG MG B 509 O HOH B 896 1555 2658 2.52 SITE 1 AC1 17 PHE A 62 TYR A 67 TRP A 87 HIS A 114 SITE 2 AC1 17 HIS A 116 ASP A 118 HIS A 179 CYS A 198 SITE 3 AC1 17 GLY A 209 ASN A 210 ASP A 213 HIS A 240 SITE 4 AC1 17 KL8 A 302 ZN A 304 ZN A 305 HOH A 409 SITE 5 AC1 17 HOH A 423 SITE 1 AC2 17 PHE A 62 TYR A 67 TRP A 87 HIS A 114 SITE 2 AC2 17 HIS A 116 ASP A 118 HIS A 179 CYS A 198 SITE 3 AC2 17 GLY A 209 ASN A 210 HIS A 240 KDZ A 301 SITE 4 AC2 17 ZN A 304 ZN A 305 HOH A 409 HOH A 423 SITE 5 AC2 17 HOH A 558 SITE 1 AC3 2 HIS A 153 CL A 306 SITE 1 AC4 5 HIS A 114 HIS A 116 HIS A 179 KDZ A 301 SITE 2 AC4 5 KL8 A 302 SITE 1 AC5 5 ASP A 118 CYS A 198 HIS A 240 KDZ A 301 SITE 2 AC5 5 KL8 A 302 SITE 1 AC6 2 HIS A 153 ZN A 303 SITE 1 AC7 2 HIS A 251 ASN A 254 SITE 1 AC8 19 PHE B 62 TYR B 67 TRP B 87 HIS B 114 SITE 2 AC8 19 HIS B 116 ASP B 118 HIS B 179 CYS B 198 SITE 3 AC8 19 ARG B 205 GLY B 209 ASN B 210 ASP B 213 SITE 4 AC8 19 HIS B 240 KL8 B 502 ZN B 503 ZN B 505 SITE 5 AC8 19 HOH B 620 HOH B 628 HOH B 822 SITE 1 AC9 17 PHE B 62 TYR B 67 TRP B 87 HIS B 114 SITE 2 AC9 17 HIS B 116 ASP B 118 HIS B 179 CYS B 198 SITE 3 AC9 17 ARG B 205 ASN B 210 HIS B 240 KDZ B 501 SITE 4 AC9 17 ZN B 503 ZN B 505 HOH B 620 HOH B 628 SITE 5 AC9 17 HOH B 786 SITE 1 AD1 5 HIS B 114 HIS B 116 HIS B 179 KDZ B 501 SITE 2 AD1 5 KL8 B 502 SITE 1 AD2 4 HIS B 153 HIS B 251 CL B 506 CL B 507 SITE 1 AD3 5 ASP B 118 CYS B 198 HIS B 240 KDZ B 501 SITE 2 AD3 5 KL8 B 502 SITE 1 AD4 7 ALA B 132 HIS B 153 HIS B 251 ASN B 254 SITE 2 AD4 7 ZN B 504 CL B 507 HOH B 866 SITE 1 AD5 6 HIS B 153 HIS B 251 ASN B 254 ZN B 504 SITE 2 AD5 6 CL B 506 HOH B 618 SITE 1 AD6 2 GLY B 31 HOH B 880 SITE 1 AD7 5 HOH A 742 HOH B 745 HOH B 813 HOH B 841 SITE 2 AD7 5 HOH B 896 SITE 1 AD8 5 PRO B 106 VAL B 107 ALA B 129 HOH B 739 SITE 2 AD8 5 HOH B 790 CRYST1 101.081 79.155 67.746 90.00 130.03 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009893 0.000000 0.008310 0.00000 SCALE2 0.000000 0.012633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019278 0.00000