HEADER TRANSPORT PROTEIN 15-MAY-19 6RQ7 TITLE GADOLINIUM MRI CONTRAST COMPOUND BINDING IN HUMAN PLASMA GLYCOPROTEIN TITLE 2 AFAMIN - RESURRECTION OF HIGHLY ANISOTROPIC DATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AFAMIN; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ALPHA-ALBUMIN,ALPHA-ALB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AFM, ALB2, ALBA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL: SF21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: AFM-PLENTI-III-EF1-ALPHA; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBACHBM/TOPO KEYWDS AFAMIN, GLYCOPROTEINS, HYDROPHOBIC LIGANDS, CONFORMATIONAL KEYWDS 2 VARIABILITY, WNT-SIGNALLING, GADOTERIDOL, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.RUPP,M.W.BOWLER,A.NASCHBERGER,P.JUYOUX,J.VONVELSEN REVDAT 4 29-JUL-20 6RQ7 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 08-JUL-20 6RQ7 1 REMARK REVDAT 2 18-DEC-19 6RQ7 1 JRNL REVDAT 1 10-JUL-19 6RQ7 0 JRNL AUTH A.NASCHBERGER,P.JUYOUX,J.VON VELSEN,B.RUPP,M.W.BOWLER JRNL TITL CONTROLLED DEHYDRATION, STRUCTURAL FLEXIBILITY AND JRNL TITL 2 GADOLINIUM MRI CONTRAST COMPOUND BINDING IN THE HUMAN PLASMA JRNL TITL 3 GLYCOPROTEIN AFAMIN. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 1071 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31793901 JRNL DOI 10.1107/S2059798319013500 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 59.6 REMARK 3 NUMBER OF REFLECTIONS : 9041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 482 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 60 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 2 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 143 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 1.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.719 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.567 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.777 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.886 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.801 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4027 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3694 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5443 ; 1.191 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8638 ; 1.029 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 5.599 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;34.840 ;23.411 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 729 ;18.934 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;11.986 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 533 ; 0.040 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4393 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 814 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1913 ; 4.210 ;12.049 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1912 ; 4.209 ;12.049 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2383 ; 6.902 ;22.583 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2384 ; 6.902 ;22.583 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2114 ; 4.315 ;12.913 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2115 ; 4.314 ;12.913 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3060 ; 7.348 ;23.836 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4554 ;10.570 ;80.095 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4555 ;10.568 ;80.088 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96598 REMARK 200 MONOCHROMATOR : C110 REMARK 200 OPTICS : BE CRL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS, AIMLESS, STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9591 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 75.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OKL_B REMARK 200 REMARK 200 REMARK: CRAP 0.071 X 0.074 X 0.081 MM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: STOCK: 5 MG/ML AFM IN 20MM HEPES PH REMARK 280 7.5, 150MM NACL, INCUBATED WITH 10MM GD-DO3A DROP: 200 NL AFM REMARK 280 STOCK + 200 NL OF PRECIPITATE IN HANGING DROP VAPOR DIFFUSION REMARK 280 (EMBL HTX) PRECIPITANT: 23 TO 28% PEG4K, 0.2M NH4SO4, 0.1 M REMARK 280 CH3COONH4, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 51.67600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.86700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.67600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.86700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 PRO B 5 REMARK 465 ARG B 6 REMARK 465 ASP B 7 REMARK 465 ILE B 8 REMARK 465 GLU B 9 REMARK 465 ASN B 10 REMARK 465 PHE B 11 REMARK 465 ASN B 12 REMARK 465 PRO B 119 REMARK 465 THR B 120 REMARK 465 LEU B 121 REMARK 465 ASP B 122 REMARK 465 PRO B 123 REMARK 465 GLU B 124 REMARK 465 GLU B 125 REMARK 465 LYS B 126 REMARK 465 CYS B 127 REMARK 465 GLN B 128 REMARK 465 ALA B 129 REMARK 465 TYR B 130 REMARK 465 GLU B 131 REMARK 465 SER B 132 REMARK 465 ASN B 133 REMARK 465 ARG B 134 REMARK 465 GLU B 135 REMARK 465 SER B 136 REMARK 465 LEU B 137 REMARK 465 SER B 170 REMARK 465 CYS B 171 REMARK 465 CYS B 172 REMARK 465 GLU B 173 REMARK 465 GLU B 174 REMARK 465 GLN B 175 REMARK 465 ASN B 176 REMARK 465 LYS B 177 REMARK 465 VAL B 178 REMARK 465 ASN B 179 REMARK 465 CYS B 180 REMARK 465 LEU B 181 REMARK 465 GLN B 182 REMARK 465 THR B 183 REMARK 465 ARG B 184 REMARK 465 ALA B 185 REMARK 465 ILE B 186 REMARK 465 SER B 306 REMARK 465 LEU B 307 REMARK 465 ARG B 308 REMARK 465 GLN B 505 REMARK 465 ASP B 506 REMARK 465 LEU B 507 REMARK 465 PHE B 508 REMARK 465 THR B 509 REMARK 465 PHE B 510 REMARK 465 HIS B 511 REMARK 465 ALA B 512 REMARK 465 ASP B 513 REMARK 465 MET B 514 REMARK 465 CYS B 515 REMARK 465 GLN B 516 REMARK 465 SER B 517 REMARK 465 GLN B 518 REMARK 465 ASN B 519 REMARK 465 GLU B 520 REMARK 465 SER B 547 REMARK 465 LEU B 548 REMARK 465 PHE B 549 REMARK 465 THR B 550 REMARK 465 ASN B 551 REMARK 465 PHE B 552 REMARK 465 ALA B 553 REMARK 465 ASN B 554 REMARK 465 VAL B 555 REMARK 465 VAL B 556 REMARK 465 ASP B 557 REMARK 465 LYS B 558 REMARK 465 CYS B 559 REMARK 465 CYS B 560 REMARK 465 LYS B 561 REMARK 465 ALA B 562 REMARK 465 GLU B 563 REMARK 465 SER B 564 REMARK 465 PRO B 565 REMARK 465 GLU B 566 REMARK 465 VAL B 567 REMARK 465 CYS B 568 REMARK 465 PHE B 569 REMARK 465 ASN B 570 REMARK 465 GLU B 571 REMARK 465 GLU B 572 REMARK 465 SER B 573 REMARK 465 PRO B 574 REMARK 465 LYS B 575 REMARK 465 ILE B 576 REMARK 465 GLY B 577 REMARK 465 ASN B 578 REMARK 465 LYS B 579 REMARK 465 GLY B 580 REMARK 465 GLU B 581 REMARK 465 ASN B 582 REMARK 465 LEU B 583 REMARK 465 TYR B 584 REMARK 465 PHE B 585 REMARK 465 GLN B 586 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 303 CG CD CE NZ REMARK 470 LEU B 305 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 59 118.80 -164.81 REMARK 500 THR B 61 70.32 -111.23 REMARK 500 ASN B 88 66.07 39.71 REMARK 500 PHE B 89 29.76 -145.69 REMARK 500 VAL B 145 -63.64 -91.47 REMARK 500 GLU B 165 82.32 -60.92 REMARK 500 VAL B 167 -46.80 -138.20 REMARK 500 ASP B 252 88.22 -60.73 REMARK 500 ILE B 274 -63.09 -127.13 REMARK 500 SER B 276 14.26 -144.14 REMARK 500 ILE B 286 131.96 -29.71 REMARK 500 ARG B 301 149.83 74.14 REMARK 500 PRO B 302 -167.48 -76.98 REMARK 500 ASN B 317 56.05 -104.61 REMARK 500 ASP B 325 80.42 -152.86 REMARK 500 CYS B 364 22.49 -74.55 REMARK 500 ASN B 368 74.55 62.78 REMARK 500 TYR B 375 53.20 -109.82 REMARK 500 GLU B 382 -74.69 -66.95 REMARK 500 LEU B 401 -57.48 -159.59 REMARK 500 THR B 442 51.91 168.64 REMARK 500 CYS B 449 -67.44 -105.65 REMARK 500 ALA B 473 -51.59 167.34 REMARK 500 LYS B 479 58.42 -95.87 REMARK 500 THR B 480 -65.92 -144.18 REMARK 500 ASP B 495 85.48 -62.91 REMARK 500 PHE B 503 -93.74 -142.16 REMARK 500 LYS B 537 53.70 -93.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 DO3 B 808 REMARK 615 DO3 B 809 REMARK 615 DO3 B 810 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD B 801 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DO3 B 808 N4 REMARK 620 2 DO3 B 808 N3 76.4 REMARK 620 3 DO3 B 808 O3 149.4 73.2 REMARK 620 4 DO3 B 808 O5 91.0 60.3 71.3 REMARK 620 5 DO3 B 808 O7 60.1 120.8 136.7 81.3 REMARK 620 6 DO3 B 808 N1 68.8 108.5 124.3 159.3 91.9 REMARK 620 7 DO3 B 808 N2 104.1 67.0 66.5 119.3 155.7 64.3 REMARK 620 8 DO3 B 808 O1 113.7 157.9 95.9 135.4 80.4 61.3 91.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD B 802 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DO3 B 810 O7 REMARK 620 2 DO3 B 810 N2 143.6 REMARK 620 3 DO3 B 810 N3 133.3 61.3 REMARK 620 4 DO3 B 810 N4 59.9 95.8 84.6 REMARK 620 5 DO3 B 810 O1 88.5 75.2 135.1 111.4 REMARK 620 6 DO3 B 810 O3 136.2 58.7 89.1 153.2 57.4 REMARK 620 7 DO3 B 810 O5 118.9 97.4 66.8 137.1 111.5 61.2 REMARK 620 8 DO3 B 810 N1 78.9 64.9 107.8 57.0 58.1 100.9 160.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD B 803 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DO3 B 809 O3 REMARK 620 2 DO3 B 809 O6 59.2 REMARK 620 3 DO3 B 809 N4 142.5 105.9 REMARK 620 4 DO3 B 809 O7 161.4 122.2 56.0 REMARK 620 5 DO3 B 809 O1 76.9 135.4 114.1 96.9 REMARK 620 6 DO3 B 809 N1 115.7 150.7 59.1 72.6 55.4 REMARK 620 7 DO3 B 809 N2 58.3 82.0 87.0 138.8 81.2 72.8 REMARK 620 8 DO3 B 809 N3 86.1 54.4 60.2 109.9 134.5 97.8 54.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5OKL RELATED DB: PDB REMARK 900 MONOCLINIC FORM, CHAINS A, B REMARK 900 RELATED ID: 6FAK RELATED DB: PDB REMARK 900 ORTHORHOMBIC FORM, CHAIN A DBREF 6RQ7 B 1 578 UNP P43652 AFAM_HUMAN 22 599 SEQADV 6RQ7 LYS B 579 UNP P43652 EXPRESSION TAG SEQADV 6RQ7 GLY B 580 UNP P43652 EXPRESSION TAG SEQADV 6RQ7 GLU B 581 UNP P43652 EXPRESSION TAG SEQADV 6RQ7 ASN B 582 UNP P43652 EXPRESSION TAG SEQADV 6RQ7 LEU B 583 UNP P43652 EXPRESSION TAG SEQADV 6RQ7 TYR B 584 UNP P43652 EXPRESSION TAG SEQADV 6RQ7 PHE B 585 UNP P43652 EXPRESSION TAG SEQADV 6RQ7 GLN B 586 UNP P43652 EXPRESSION TAG SEQRES 1 B 586 LEU PRO THR GLN PRO ARG ASP ILE GLU ASN PHE ASN SER SEQRES 2 B 586 THR GLN LYS PHE ILE GLU ASP ASN ILE GLU TYR ILE THR SEQRES 3 B 586 ILE ILE ALA PHE ALA GLN TYR VAL GLN GLU ALA THR PHE SEQRES 4 B 586 GLU GLU MET GLU LYS LEU VAL LYS ASP MET VAL GLU TYR SEQRES 5 B 586 LYS ASP ARG CYS MET ALA ASP LYS THR LEU PRO GLU CYS SEQRES 6 B 586 SER LYS LEU PRO ASN ASN VAL LEU GLN GLU LYS ILE CYS SEQRES 7 B 586 ALA MET GLU GLY LEU PRO GLN LYS HIS ASN PHE SER HIS SEQRES 8 B 586 CYS CYS SER LYS VAL ASP ALA GLN ARG ARG LEU CYS PHE SEQRES 9 B 586 PHE TYR ASN LYS LYS SER ASP VAL GLY PHE LEU PRO PRO SEQRES 10 B 586 PHE PRO THR LEU ASP PRO GLU GLU LYS CYS GLN ALA TYR SEQRES 11 B 586 GLU SER ASN ARG GLU SER LEU LEU ASN HIS PHE LEU TYR SEQRES 12 B 586 GLU VAL ALA ARG ARG ASN PRO PHE VAL PHE ALA PRO THR SEQRES 13 B 586 LEU LEU THR VAL ALA VAL HIS PHE GLU GLU VAL ALA LYS SEQRES 14 B 586 SER CYS CYS GLU GLU GLN ASN LYS VAL ASN CYS LEU GLN SEQRES 15 B 586 THR ARG ALA ILE PRO VAL THR GLN TYR LEU LYS ALA PHE SEQRES 16 B 586 SER SER TYR GLN LYS HIS VAL CYS GLY ALA LEU LEU LYS SEQRES 17 B 586 PHE GLY THR LYS VAL VAL HIS PHE ILE TYR ILE ALA ILE SEQRES 18 B 586 LEU SER GLN LYS PHE PRO LYS ILE GLU PHE LYS GLU LEU SEQRES 19 B 586 ILE SER LEU VAL GLU ASP VAL SER SER ASN TYR ASP GLY SEQRES 20 B 586 CYS CYS GLU GLY ASP VAL VAL GLN CYS ILE ARG ASP THR SEQRES 21 B 586 SER LYS VAL MET ASN HIS ILE CYS SER LYS GLN ASP SER SEQRES 22 B 586 ILE SER SER LYS ILE LYS GLU CYS CYS GLU LYS LYS ILE SEQRES 23 B 586 PRO GLU ARG GLY GLN CYS ILE ILE ASN SER ASN LYS ASP SEQRES 24 B 586 ASP ARG PRO LYS ASP LEU SER LEU ARG GLU GLY LYS PHE SEQRES 25 B 586 THR ASP SER GLU ASN VAL CYS GLN GLU ARG ASP ALA ASP SEQRES 26 B 586 PRO ASP THR PHE PHE ALA LYS PHE THR PHE GLU TYR SER SEQRES 27 B 586 ARG ARG HIS PRO ASP LEU SER ILE PRO GLU LEU LEU ARG SEQRES 28 B 586 ILE VAL GLN ILE TYR LYS ASP LEU LEU ARG ASN CYS CYS SEQRES 29 B 586 ASN THR GLU ASN PRO PRO GLY CYS TYR ARG TYR ALA GLU SEQRES 30 B 586 ASP LYS PHE ASN GLU THR THR GLU LYS SER LEU LYS MET SEQRES 31 B 586 VAL GLN GLN GLU CYS LYS HIS PHE GLN ASN LEU GLY LYS SEQRES 32 B 586 ASP GLY LEU LYS TYR HIS TYR LEU ILE ARG LEU THR LYS SEQRES 33 B 586 ILE ALA PRO GLN LEU SER THR GLU GLU LEU VAL SER LEU SEQRES 34 B 586 GLY GLU LYS MET VAL THR ALA PHE THR THR CYS CYS THR SEQRES 35 B 586 LEU SER GLU GLU PHE ALA CYS VAL ASP ASN LEU ALA ASP SEQRES 36 B 586 LEU VAL PHE GLY GLU LEU CYS GLY VAL ASN GLU ASN ARG SEQRES 37 B 586 THR ILE ASN PRO ALA VAL ASP HIS CYS CYS LYS THR ASN SEQRES 38 B 586 PHE ALA PHE ARG ARG PRO CYS PHE GLU SER LEU LYS ALA SEQRES 39 B 586 ASP LYS THR TYR VAL PRO PRO PRO PHE SER GLN ASP LEU SEQRES 40 B 586 PHE THR PHE HIS ALA ASP MET CYS GLN SER GLN ASN GLU SEQRES 41 B 586 GLU LEU GLN ARG LYS THR ASP ARG PHE LEU VAL ASN LEU SEQRES 42 B 586 VAL LYS LEU LYS HIS GLU LEU THR ASP GLU GLU LEU GLN SEQRES 43 B 586 SER LEU PHE THR ASN PHE ALA ASN VAL VAL ASP LYS CYS SEQRES 44 B 586 CYS LYS ALA GLU SER PRO GLU VAL CYS PHE ASN GLU GLU SEQRES 45 B 586 SER PRO LYS ILE GLY ASN LYS GLY GLU ASN LEU TYR PHE SEQRES 46 B 586 GLN HET NAG A 1 14 HET NAG A 2 14 HET GD B 801 1 HET GD B 802 1 HET GD B 803 1 HET NAG B 804 14 HET NAG B 807 14 HET DO3 B 808 28 HET DO3 B 809 28 HET DO3 B 810 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GD GADOLINIUM ATOM HETNAM DO3 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10- HETNAM 2 DO3 TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 3 GD 3(GD) FORMUL 8 DO3 3(C17 H32 N4 O7) HELIX 1 AA1 SER B 13 ASN B 21 1 9 HELIX 2 AA2 ASN B 21 VAL B 34 1 14 HELIX 3 AA3 THR B 38 MET B 57 1 20 HELIX 4 AA4 LEU B 62 SER B 66 5 5 HELIX 5 AA5 VAL B 72 MET B 80 1 9 HELIX 6 AA6 GLY B 82 HIS B 87 1 6 HELIX 7 AA7 PHE B 89 SER B 94 1 6 HELIX 8 AA8 VAL B 96 LYS B 108 1 13 HELIX 9 AA9 ASN B 139 ARG B 147 1 9 HELIX 10 AB1 PHE B 153 HIS B 163 1 11 HELIX 11 AB2 VAL B 188 GLY B 210 1 23 HELIX 12 AB3 LYS B 212 PHE B 226 1 15 HELIX 13 AB4 GLU B 230 GLY B 251 1 22 HELIX 14 AB5 ASP B 252 SER B 269 1 18 HELIX 15 AB6 LYS B 270 ILE B 274 5 5 HELIX 16 AB7 PRO B 287 SER B 296 1 10 HELIX 17 AB8 GLY B 310 SER B 315 1 6 HELIX 18 AB9 ASN B 317 ASP B 325 1 9 HELIX 19 AC1 ASP B 325 ARG B 340 1 16 HELIX 20 AC2 SER B 345 CYS B 364 1 20 HELIX 21 AC3 PRO B 369 ARG B 374 1 6 HELIX 22 AC4 TYR B 375 GLN B 393 1 19 HELIX 23 AC5 GLN B 393 ASN B 400 1 8 HELIX 24 AC6 GLY B 402 ALA B 418 1 17 HELIX 25 AC7 SER B 422 THR B 439 1 18 HELIX 26 AC8 GLU B 446 ASP B 455 1 10 HELIX 27 AC9 ASP B 455 GLY B 463 1 9 HELIX 28 AD1 ALA B 473 LYS B 479 1 7 HELIX 29 AD2 ARG B 485 SER B 491 1 7 HELIX 30 AD3 LEU B 522 LYS B 537 1 16 HELIX 31 AD4 THR B 541 GLN B 546 1 6 SSBOND 1 CYS B 56 CYS B 65 1555 1555 2.03 SSBOND 2 CYS B 78 CYS B 93 1555 1555 2.03 SSBOND 3 CYS B 92 CYS B 103 1555 1555 2.04 SSBOND 4 CYS B 203 CYS B 249 1555 1555 2.03 SSBOND 5 CYS B 248 CYS B 256 1555 1555 2.03 SSBOND 6 CYS B 268 CYS B 282 1555 1555 2.03 SSBOND 7 CYS B 281 CYS B 292 1555 1555 2.04 SSBOND 8 CYS B 319 CYS B 364 1555 1555 2.03 SSBOND 9 CYS B 363 CYS B 372 1555 1555 2.03 SSBOND 10 CYS B 395 CYS B 441 1555 1555 2.03 SSBOND 11 CYS B 440 CYS B 449 1555 1555 2.02 SSBOND 12 CYS B 462 CYS B 478 1555 1555 2.03 SSBOND 13 CYS B 477 CYS B 488 1555 1555 2.04 LINK ND2 ASN B 88 C1 NAG A 1 1555 1555 1.45 LINK ND2 ASN B 381 C1 NAG B 807 1555 1555 1.45 LINK ND2 ASN B 467 C1 NAG B 804 1555 1555 1.45 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK GD GD B 801 N4 DO3 B 808 1555 1555 2.70 LINK GD GD B 801 N3 DO3 B 808 1555 1555 2.61 LINK GD GD B 801 O3 DO3 B 808 1555 1555 2.70 LINK GD GD B 801 O5 DO3 B 808 1555 1555 2.69 LINK GD GD B 801 O7 DO3 B 808 1555 1555 2.66 LINK GD GD B 801 N1 DO3 B 808 1555 1555 2.78 LINK GD GD B 801 N2 DO3 B 808 1555 1555 2.73 LINK GD GD B 801 O1 DO3 B 808 1555 1555 2.75 LINK GD GD B 802 O7 DO3 B 810 1555 4545 2.71 LINK GD GD B 802 N2 DO3 B 810 1555 4545 3.01 LINK GD GD B 802 N3 DO3 B 810 1555 4545 2.56 LINK GD GD B 802 N4 DO3 B 810 1555 4545 2.65 LINK GD GD B 802 O1 DO3 B 810 1555 4545 2.81 LINK GD GD B 802 O3 DO3 B 810 1555 4545 2.63 LINK GD GD B 802 O5 DO3 B 810 1555 4545 3.04 LINK GD GD B 802 N1 DO3 B 810 1555 4545 3.05 LINK GD GD B 803 O3 DO3 B 809 1555 1555 2.69 LINK GD GD B 803 O6 DO3 B 809 1555 1555 3.39 LINK GD GD B 803 N4 DO3 B 809 1555 1555 2.95 LINK GD GD B 803 O7 DO3 B 809 1555 1555 2.64 LINK GD GD B 803 O1 DO3 B 809 1555 1555 2.75 LINK GD GD B 803 N1 DO3 B 809 1555 1555 2.95 LINK GD GD B 803 N2 DO3 B 809 1555 1555 2.85 LINK GD GD B 803 N3 DO3 B 809 1555 1555 3.42 CISPEP 1 ILE B 286 PRO B 287 0 -12.07 CRYST1 103.352 109.734 48.381 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009676 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009113 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020669 0.00000