HEADER PROTEIN BINDING 15-MAY-19 6RQG TITLE P46, AN IMMUNODOMINANT SURFACE PROTEIN FROM MYCOPLASMA HYOPNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 46 KDA SURFACE ANTIGEN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: P46; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA HYOPNEUMONIAE J; SOURCE 3 ORGANISM_TAXID: 262719; SOURCE 4 GENE: P46, MHJ_0511; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS IMMUNODOMINANT SURFACE PROTEIN MYCOPLASMA HYOPNEUMONIAE P46, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.GUASCH,I.FITA REVDAT 5 24-JAN-24 6RQG 1 REMARK REVDAT 4 03-JUN-20 6RQG 1 COMPND SOURCE JRNL REMARK REVDAT 4 2 1 SEQADV SEQRES HET HETNAM REVDAT 4 3 1 FORMUL HELIX SHEET LINK REVDAT 4 4 1 SITE CRYST1 SCALE ATOM REVDAT 3 29-JAN-20 6RQG 1 REMARK REVDAT 2 20-NOV-19 6RQG 1 CRYST1 REVDAT 1 13-NOV-19 6RQG 0 JRNL AUTH A.GUASCH,J.MONTANE,A.MOROS,J.PINYOL,M.SITJA, JRNL AUTH 2 L.GONZALEZ-GONZALEZ,I.FITA JRNL TITL STRUCTURE OF P46, AN IMMUNODOMINANT SURFACE 58 PROTEIN FROM JRNL TITL 2 MYCOPLASMA HYOPNEUMONIAE:INTERACTION WITH A MONOCLONAL JRNL TITL 3 ANTIBODY JRNL REF ACTA CRYS SECTION D V. D76 418 2020 JRNL REFN ISSN 2059-7983 JRNL PMID 32355038 JRNL DOI 10.1107/S2059798320003903 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 26739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.3900 - 6.6800 0.97 2680 160 0.1707 0.1935 REMARK 3 2 6.6800 - 5.3000 1.00 2621 166 0.2088 0.2606 REMARK 3 3 5.3000 - 4.6300 0.98 2570 163 0.1740 0.2045 REMARK 3 4 4.6300 - 4.2100 1.00 2616 141 0.1722 0.2259 REMARK 3 5 4.2100 - 3.9100 1.00 2607 126 0.2071 0.2945 REMARK 3 6 3.9100 - 3.6800 0.99 2567 130 0.2256 0.2626 REMARK 3 7 3.6800 - 3.4900 0.99 2589 128 0.2344 0.3252 REMARK 3 8 3.4900 - 3.3400 0.95 2469 116 0.2657 0.3230 REMARK 3 9 3.3400 - 3.2100 0.91 2357 143 0.2983 0.3697 REMARK 3 10 3.2100 - 3.1000 0.89 2283 107 0.2971 0.3544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.412 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.845 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 8741 REMARK 3 ANGLE : 0.649 11833 REMARK 3 CHIRALITY : 0.048 1326 REMARK 3 PLANARITY : 0.004 1548 REMARK 3 DIHEDRAL : 15.934 3269 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 43 THROUGH 124 OR REMARK 3 RESID 129 THROUGH 230 OR RESID 232 REMARK 3 THROUGH 362 OR RESID 366 THROUGH 386 OR REMARK 3 RESID 388 THROUGH 391 OR RESID 395 REMARK 3 THROUGH 401 OR RESID 403 THROUGH 415 OR REMARK 3 RESID 501)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 43 THROUGH 124 OR REMARK 3 RESID 129 THROUGH 230 OR RESID 232 REMARK 3 THROUGH 362 OR RESID 366 THROUGH 386 OR REMARK 3 RESID 388 THROUGH 391 OR RESID 395 REMARK 3 THROUGH 401 OR RESID 403 THROUGH 415 OR REMARK 3 RESID 501)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 43 THROUGH 124 OR REMARK 3 RESID 129 THROUGH 230 OR RESID 232 REMARK 3 THROUGH 362 OR RESID 366 THROUGH 386 OR REMARK 3 RESID 388 THROUGH 391 OR RESID 395 REMARK 3 THROUGH 401 OR RESID 403 THROUGH 415 OR REMARK 3 RESID 501)) REMARK 3 SELECTION : (CHAIN 'C' AND (RESID 43 THROUGH 230 OR REMARK 3 RESID 232 THROUGH 401 OR RESID 403 REMARK 3 THROUGH 415 OR RESID 501)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RQG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26816 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 58.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 10.56 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4YWH, 3URM, 4WWH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5 0.2 M SODIUM ACETATE REMARK 280 32% PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.37733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.75467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.75467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.37733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 THR A 36 REMARK 465 SER A 37 REMARK 465 ASP A 38 REMARK 465 SER A 39 REMARK 465 LYS A 40 REMARK 465 PRO A 41 REMARK 465 GLN A 42 REMARK 465 ALA A 416 REMARK 465 LEU A 417 REMARK 465 GLU A 418 REMARK 465 MET B 32 REMARK 465 SER B 33 REMARK 465 GLY B 34 REMARK 465 SER B 35 REMARK 465 THR B 36 REMARK 465 SER B 37 REMARK 465 ASP B 38 REMARK 465 SER B 39 REMARK 465 LYS B 40 REMARK 465 PRO B 41 REMARK 465 GLN B 42 REMARK 465 ALA B 416 REMARK 465 LEU B 417 REMARK 465 GLU B 418 REMARK 465 MET C 32 REMARK 465 SER C 33 REMARK 465 GLY C 34 REMARK 465 SER C 35 REMARK 465 THR C 36 REMARK 465 SER C 37 REMARK 465 ASP C 38 REMARK 465 SER C 39 REMARK 465 LYS C 40 REMARK 465 PRO C 41 REMARK 465 GLN C 42 REMARK 465 THR C 124 REMARK 465 ALA C 125 REMARK 465 VAL C 126 REMARK 465 ASN C 127 REMARK 465 LYS C 363 REMARK 465 ALA C 364 REMARK 465 SER C 365 REMARK 465 GLN C 387 REMARK 465 GLN C 392 REMARK 465 GLY C 393 REMARK 465 LYS C 394 REMARK 465 ALA C 416 REMARK 465 LEU C 417 REMARK 465 GLU C 418 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 217 O HOH B 601 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 51 -152.96 -115.46 REMARK 500 ASP A 61 76.81 62.76 REMARK 500 ASP A 140 -35.07 73.50 REMARK 500 HIS A 193 38.68 -145.25 REMARK 500 GLU A 197 -151.37 -80.12 REMARK 500 ASN A 233 18.64 58.64 REMARK 500 TRP A 251 29.01 49.24 REMARK 500 ASP A 321 -26.37 98.64 REMARK 500 LYS A 341 78.45 -110.54 REMARK 500 LYS A 360 -136.39 -88.58 REMARK 500 ASN A 362 -14.62 61.53 REMARK 500 TYR A 389 80.77 58.27 REMARK 500 LYS A 408 -131.19 -92.05 REMARK 500 SER B 51 -152.53 -115.52 REMARK 500 ASP B 61 76.34 64.56 REMARK 500 ASP B 140 -37.42 72.08 REMARK 500 LYS B 148 32.09 -91.38 REMARK 500 LYS B 175 99.64 -63.21 REMARK 500 HIS B 193 39.86 -143.94 REMARK 500 GLU B 197 -148.26 -73.30 REMARK 500 ASN B 233 17.78 59.87 REMARK 500 TRP B 251 29.68 47.87 REMARK 500 ASP B 321 -30.23 106.38 REMARK 500 LYS B 341 77.70 -113.74 REMARK 500 SER B 365 -101.46 -73.97 REMARK 500 ARG B 366 -40.62 -155.03 REMARK 500 ASN B 386 27.35 -144.79 REMARK 500 TYR B 389 78.68 59.77 REMARK 500 ASN B 395 73.88 52.10 REMARK 500 LYS B 408 -127.89 -91.99 REMARK 500 PRO B 414 10.63 -66.18 REMARK 500 SER C 51 -152.71 -115.62 REMARK 500 ASP C 61 77.55 63.27 REMARK 500 ASP C 140 -34.08 69.98 REMARK 500 LYS C 148 30.64 -87.18 REMARK 500 ASP C 177 64.17 -170.37 REMARK 500 HIS C 193 37.12 -144.50 REMARK 500 GLU C 197 -151.10 60.61 REMARK 500 ASN C 233 18.53 58.02 REMARK 500 GLU C 241 58.36 -98.84 REMARK 500 GLU C 243 -90.08 55.77 REMARK 500 ASP C 321 -25.93 98.37 REMARK 500 LYS C 360 -84.09 -91.23 REMARK 500 LYS C 361 157.08 138.04 REMARK 500 SER C 381 41.65 -83.71 REMARK 500 TYR C 389 79.32 56.28 REMARK 500 LYS C 408 -129.48 -90.28 REMARK 500 PRO C 414 62.43 -68.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 312 O REMARK 620 2 ILE A 315 O 94.3 REMARK 620 3 GLY A 333 O 94.7 157.1 REMARK 620 4 ASP A 334 O 83.9 88.7 71.5 REMARK 620 5 ASN A 336 OD1 154.3 73.6 89.5 73.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 312 O REMARK 620 2 ILE B 315 O 88.8 REMARK 620 3 GLY B 333 O 91.4 165.6 REMARK 620 4 ASP B 334 O 76.9 92.9 73.1 REMARK 620 5 ASN B 336 OD1 151.9 74.2 99.7 81.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 312 O REMARK 620 2 ILE C 315 O 86.3 REMARK 620 3 GLY C 333 O 85.0 168.7 REMARK 620 4 ASP C 334 O 82.0 96.7 74.9 REMARK 620 5 ASN C 336 OD1 153.3 75.0 110.5 81.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 501 DBREF 6RQG A 33 416 UNP P0C0J8 P46_MYCHJ 33 416 DBREF 6RQG B 33 416 UNP P0C0J8 P46_MYCHJ 33 416 DBREF 6RQG C 33 416 UNP P0C0J8 P46_MYCHJ 33 416 SEQADV 6RQG MET A 32 UNP P0C0J8 INITIATING METHIONINE SEQADV 6RQG LEU A 417 UNP P0C0J8 EXPRESSION TAG SEQADV 6RQG GLU A 418 UNP P0C0J8 EXPRESSION TAG SEQADV 6RQG MET B 32 UNP P0C0J8 INITIATING METHIONINE SEQADV 6RQG LEU B 417 UNP P0C0J8 EXPRESSION TAG SEQADV 6RQG GLU B 418 UNP P0C0J8 EXPRESSION TAG SEQADV 6RQG MET C 32 UNP P0C0J8 INITIATING METHIONINE SEQADV 6RQG LEU C 417 UNP P0C0J8 EXPRESSION TAG SEQADV 6RQG GLU C 418 UNP P0C0J8 EXPRESSION TAG SEQRES 1 A 387 MET SER GLY SER THR SER ASP SER LYS PRO GLN ALA GLU SEQRES 2 A 387 THR LEU LYS HIS LYS VAL SER ASN ASP SER ILE ARG ILE SEQRES 3 A 387 ALA LEU THR ASP PRO ASP ASN PRO ARG TRP ILE SER ALA SEQRES 4 A 387 GLN LYS ASP ILE ILE SER TYR VAL ASP GLU THR GLU ALA SEQRES 5 A 387 ALA THR SER THR ILE THR LYS ASN GLN ASP ALA GLN ASN SEQRES 6 A 387 ASN TRP LEU THR GLN GLN ALA ASN LEU SER PRO ALA PRO SEQRES 7 A 387 LYS GLY PHE ILE ILE ALA PRO GLU ASN GLY SER GLY VAL SEQRES 8 A 387 GLY THR ALA VAL ASN THR ILE ALA ASP LYS GLY ILE PRO SEQRES 9 A 387 ILE VAL ALA TYR ASP ARG LEU ILE THR GLY SER ASP LYS SEQRES 10 A 387 TYR ASP TRP TYR VAL SER PHE ASP ASN GLU LYS VAL GLY SEQRES 11 A 387 GLU LEU GLN GLY LEU SER LEU ALA ALA GLY LEU LEU GLY SEQRES 12 A 387 LYS GLU ASP GLY ALA PHE ASP SER ILE ASP GLN MET ASN SEQRES 13 A 387 GLU TYR LEU LYS SER HIS MET PRO GLN GLU THR ILE SER SEQRES 14 A 387 PHE TYR THR ILE ALA GLY SER GLN ASP ASP ASN ASN SER SEQRES 15 A 387 GLN TYR PHE TYR ASN GLY ALA MET LYS VAL LEU LYS GLU SEQRES 16 A 387 LEU MET LYS ASN SER GLN ASN LYS ILE ILE ASP LEU SER SEQRES 17 A 387 PRO GLU GLY GLU ASN ALA VAL TYR VAL PRO GLY TRP ASN SEQRES 18 A 387 TYR GLY THR ALA GLY GLN ARG ILE GLN SER PHE LEU THR SEQRES 19 A 387 ILE ASN LYS ASP PRO ALA GLY GLY ASN LYS ILE LYS ALA SEQRES 20 A 387 VAL GLY SER LYS PRO ALA SER ILE PHE LYS GLY PHE LEU SEQRES 21 A 387 ALA PRO ASN ASP GLY MET ALA GLU GLN ALA ILE THR LYS SEQRES 22 A 387 LEU LYS LEU GLU GLY PHE ASP THR GLN LYS ILE PHE VAL SEQRES 23 A 387 THR GLY GLN ASP TYR ASN ASP LYS ALA LYS THR PHE ILE SEQRES 24 A 387 LYS ASP GLY ASP GLN ASN MET THR ILE TYR LYS PRO ASP SEQRES 25 A 387 LYS VAL LEU GLY LYS VAL ALA VAL GLU VAL LEU ARG VAL SEQRES 26 A 387 LEU ILE ALA LYS LYS ASN LYS ALA SER ARG SER GLU VAL SEQRES 27 A 387 GLU ASN GLU LEU LYS ALA LYS LEU PRO ASN ILE SER PHE SEQRES 28 A 387 LYS TYR ASP ASN GLN THR TYR LYS VAL GLN GLY LYS ASN SEQRES 29 A 387 ILE ASN THR ILE LEU VAL SER PRO VAL ILE VAL THR LYS SEQRES 30 A 387 ALA ASN VAL ASP ASN PRO ASP ALA LEU GLU SEQRES 1 B 387 MET SER GLY SER THR SER ASP SER LYS PRO GLN ALA GLU SEQRES 2 B 387 THR LEU LYS HIS LYS VAL SER ASN ASP SER ILE ARG ILE SEQRES 3 B 387 ALA LEU THR ASP PRO ASP ASN PRO ARG TRP ILE SER ALA SEQRES 4 B 387 GLN LYS ASP ILE ILE SER TYR VAL ASP GLU THR GLU ALA SEQRES 5 B 387 ALA THR SER THR ILE THR LYS ASN GLN ASP ALA GLN ASN SEQRES 6 B 387 ASN TRP LEU THR GLN GLN ALA ASN LEU SER PRO ALA PRO SEQRES 7 B 387 LYS GLY PHE ILE ILE ALA PRO GLU ASN GLY SER GLY VAL SEQRES 8 B 387 GLY THR ALA VAL ASN THR ILE ALA ASP LYS GLY ILE PRO SEQRES 9 B 387 ILE VAL ALA TYR ASP ARG LEU ILE THR GLY SER ASP LYS SEQRES 10 B 387 TYR ASP TRP TYR VAL SER PHE ASP ASN GLU LYS VAL GLY SEQRES 11 B 387 GLU LEU GLN GLY LEU SER LEU ALA ALA GLY LEU LEU GLY SEQRES 12 B 387 LYS GLU ASP GLY ALA PHE ASP SER ILE ASP GLN MET ASN SEQRES 13 B 387 GLU TYR LEU LYS SER HIS MET PRO GLN GLU THR ILE SER SEQRES 14 B 387 PHE TYR THR ILE ALA GLY SER GLN ASP ASP ASN ASN SER SEQRES 15 B 387 GLN TYR PHE TYR ASN GLY ALA MET LYS VAL LEU LYS GLU SEQRES 16 B 387 LEU MET LYS ASN SER GLN ASN LYS ILE ILE ASP LEU SER SEQRES 17 B 387 PRO GLU GLY GLU ASN ALA VAL TYR VAL PRO GLY TRP ASN SEQRES 18 B 387 TYR GLY THR ALA GLY GLN ARG ILE GLN SER PHE LEU THR SEQRES 19 B 387 ILE ASN LYS ASP PRO ALA GLY GLY ASN LYS ILE LYS ALA SEQRES 20 B 387 VAL GLY SER LYS PRO ALA SER ILE PHE LYS GLY PHE LEU SEQRES 21 B 387 ALA PRO ASN ASP GLY MET ALA GLU GLN ALA ILE THR LYS SEQRES 22 B 387 LEU LYS LEU GLU GLY PHE ASP THR GLN LYS ILE PHE VAL SEQRES 23 B 387 THR GLY GLN ASP TYR ASN ASP LYS ALA LYS THR PHE ILE SEQRES 24 B 387 LYS ASP GLY ASP GLN ASN MET THR ILE TYR LYS PRO ASP SEQRES 25 B 387 LYS VAL LEU GLY LYS VAL ALA VAL GLU VAL LEU ARG VAL SEQRES 26 B 387 LEU ILE ALA LYS LYS ASN LYS ALA SER ARG SER GLU VAL SEQRES 27 B 387 GLU ASN GLU LEU LYS ALA LYS LEU PRO ASN ILE SER PHE SEQRES 28 B 387 LYS TYR ASP ASN GLN THR TYR LYS VAL GLN GLY LYS ASN SEQRES 29 B 387 ILE ASN THR ILE LEU VAL SER PRO VAL ILE VAL THR LYS SEQRES 30 B 387 ALA ASN VAL ASP ASN PRO ASP ALA LEU GLU SEQRES 1 C 387 MET SER GLY SER THR SER ASP SER LYS PRO GLN ALA GLU SEQRES 2 C 387 THR LEU LYS HIS LYS VAL SER ASN ASP SER ILE ARG ILE SEQRES 3 C 387 ALA LEU THR ASP PRO ASP ASN PRO ARG TRP ILE SER ALA SEQRES 4 C 387 GLN LYS ASP ILE ILE SER TYR VAL ASP GLU THR GLU ALA SEQRES 5 C 387 ALA THR SER THR ILE THR LYS ASN GLN ASP ALA GLN ASN SEQRES 6 C 387 ASN TRP LEU THR GLN GLN ALA ASN LEU SER PRO ALA PRO SEQRES 7 C 387 LYS GLY PHE ILE ILE ALA PRO GLU ASN GLY SER GLY VAL SEQRES 8 C 387 GLY THR ALA VAL ASN THR ILE ALA ASP LYS GLY ILE PRO SEQRES 9 C 387 ILE VAL ALA TYR ASP ARG LEU ILE THR GLY SER ASP LYS SEQRES 10 C 387 TYR ASP TRP TYR VAL SER PHE ASP ASN GLU LYS VAL GLY SEQRES 11 C 387 GLU LEU GLN GLY LEU SER LEU ALA ALA GLY LEU LEU GLY SEQRES 12 C 387 LYS GLU ASP GLY ALA PHE ASP SER ILE ASP GLN MET ASN SEQRES 13 C 387 GLU TYR LEU LYS SER HIS MET PRO GLN GLU THR ILE SER SEQRES 14 C 387 PHE TYR THR ILE ALA GLY SER GLN ASP ASP ASN ASN SER SEQRES 15 C 387 GLN TYR PHE TYR ASN GLY ALA MET LYS VAL LEU LYS GLU SEQRES 16 C 387 LEU MET LYS ASN SER GLN ASN LYS ILE ILE ASP LEU SER SEQRES 17 C 387 PRO GLU GLY GLU ASN ALA VAL TYR VAL PRO GLY TRP ASN SEQRES 18 C 387 TYR GLY THR ALA GLY GLN ARG ILE GLN SER PHE LEU THR SEQRES 19 C 387 ILE ASN LYS ASP PRO ALA GLY GLY ASN LYS ILE LYS ALA SEQRES 20 C 387 VAL GLY SER LYS PRO ALA SER ILE PHE LYS GLY PHE LEU SEQRES 21 C 387 ALA PRO ASN ASP GLY MET ALA GLU GLN ALA ILE THR LYS SEQRES 22 C 387 LEU LYS LEU GLU GLY PHE ASP THR GLN LYS ILE PHE VAL SEQRES 23 C 387 THR GLY GLN ASP TYR ASN ASP LYS ALA LYS THR PHE ILE SEQRES 24 C 387 LYS ASP GLY ASP GLN ASN MET THR ILE TYR LYS PRO ASP SEQRES 25 C 387 LYS VAL LEU GLY LYS VAL ALA VAL GLU VAL LEU ARG VAL SEQRES 26 C 387 LEU ILE ALA LYS LYS ASN LYS ALA SER ARG SER GLU VAL SEQRES 27 C 387 GLU ASN GLU LEU LYS ALA LYS LEU PRO ASN ILE SER PHE SEQRES 28 C 387 LYS TYR ASP ASN GLN THR TYR LYS VAL GLN GLY LYS ASN SEQRES 29 C 387 ILE ASN THR ILE LEU VAL SER PRO VAL ILE VAL THR LYS SEQRES 30 C 387 ALA ASN VAL ASP ASN PRO ASP ALA LEU GLU HET NA A 501 1 HET NA B 501 1 HET NA C 501 1 HETNAM NA SODIUM ION FORMUL 4 NA 3(NA 1+) FORMUL 7 HOH *2(H2 O) HELIX 1 AA1 ASN A 64 ASP A 79 1 16 HELIX 2 AA2 ASN A 91 ASN A 104 1 14 HELIX 3 AA3 VAL A 122 ASP A 131 1 10 HELIX 4 AA4 ASP A 156 GLY A 174 1 19 HELIX 5 AA5 SER A 182 HIS A 193 1 12 HELIX 6 AA6 ASP A 210 ASN A 230 1 21 HELIX 7 AA7 VAL A 248 TRP A 251 5 4 HELIX 8 AA8 ASN A 252 LYS A 268 1 17 HELIX 9 AA9 ASN A 294 GLU A 308 1 15 HELIX 10 AB1 ASN A 323 ASP A 332 1 10 HELIX 11 AB2 PRO A 342 LYS A 360 1 19 HELIX 12 AB3 SER A 365 LEU A 377 1 13 HELIX 13 AB4 ASN B 64 ASP B 79 1 16 HELIX 14 AB5 ASN B 91 ASN B 104 1 14 HELIX 15 AB6 VAL B 122 LYS B 132 1 11 HELIX 16 AB7 ASP B 156 GLY B 174 1 19 HELIX 17 AB8 SER B 182 HIS B 193 1 12 HELIX 18 AB9 ASP B 210 ASN B 230 1 21 HELIX 19 AC1 VAL B 248 TRP B 251 5 4 HELIX 20 AC2 ASN B 252 LYS B 268 1 17 HELIX 21 AC3 ASN B 294 GLU B 308 1 15 HELIX 22 AC4 ASN B 323 ASP B 332 1 10 HELIX 23 AC5 PRO B 342 LYS B 361 1 20 HELIX 24 AC6 GLU B 368 LEU B 377 1 10 HELIX 25 AC7 ASN C 64 ASP C 79 1 16 HELIX 26 AC8 ASN C 91 ASN C 104 1 14 HELIX 27 AC9 ILE C 129 GLY C 133 5 5 HELIX 28 AD1 ASP C 156 GLY C 174 1 19 HELIX 29 AD2 SER C 182 SER C 192 1 11 HELIX 30 AD3 ASP C 210 ASN C 230 1 21 HELIX 31 AD4 VAL C 248 TRP C 251 5 4 HELIX 32 AD5 ASN C 252 LYS C 268 1 17 HELIX 33 AD6 ASN C 294 GLU C 308 1 15 HELIX 34 AD7 ASN C 323 ASP C 332 1 10 HELIX 35 AD8 GLY C 347 LYS C 361 1 15 HELIX 36 AD9 SER C 367 LEU C 377 1 11 SHEET 1 AA1 7 ALA A 84 THR A 89 0 SHEET 2 AA1 7 ILE A 55 THR A 60 1 N LEU A 59 O THR A 87 SHEET 3 AA1 7 PHE A 112 ILE A 114 1 O ILE A 113 N ALA A 58 SHEET 4 AA1 7 ILE A 136 TYR A 139 1 O TYR A 139 N ILE A 114 SHEET 5 AA1 7 TRP A 151 PHE A 155 1 O VAL A 153 N ALA A 138 SHEET 6 AA1 7 THR A 398 SER A 402 1 O SER A 402 N SER A 154 SHEET 7 AA1 7 LYS A 383 ASP A 385 -1 N ASP A 385 O ILE A 399 SHEET 1 AA2 4 ILE A 235 ASP A 237 0 SHEET 2 AA2 4 ILE A 199 THR A 203 1 N ILE A 199 O ILE A 236 SHEET 3 AA2 4 SER A 285 LEU A 291 1 O LEU A 291 N TYR A 202 SHEET 4 AA2 4 LYS A 275 ILE A 276 -1 N ILE A 276 O SER A 285 SHEET 1 AA3 4 ILE A 235 ASP A 237 0 SHEET 2 AA3 4 ILE A 199 THR A 203 1 N ILE A 199 O ILE A 236 SHEET 3 AA3 4 SER A 285 LEU A 291 1 O LEU A 291 N TYR A 202 SHEET 4 AA3 4 PHE A 316 VAL A 317 1 O PHE A 316 N PHE A 290 SHEET 1 AA4 2 THR A 338 TYR A 340 0 SHEET 2 AA4 2 ILE A 405 THR A 407 -1 O ILE A 405 N TYR A 340 SHEET 1 AA5 2 LYS A 390 VAL A 391 0 SHEET 2 AA5 2 ASN A 395 ILE A 396 -1 O ASN A 395 N VAL A 391 SHEET 1 AA6 7 ALA B 84 THR B 89 0 SHEET 2 AA6 7 ILE B 55 THR B 60 1 N LEU B 59 O THR B 89 SHEET 3 AA6 7 PHE B 112 ILE B 114 1 O ILE B 113 N ALA B 58 SHEET 4 AA6 7 ILE B 136 TYR B 139 1 O TYR B 139 N ILE B 114 SHEET 5 AA6 7 TRP B 151 PHE B 155 1 O VAL B 153 N ALA B 138 SHEET 6 AA6 7 THR B 398 SER B 402 1 O LEU B 400 N TYR B 152 SHEET 7 AA6 7 LYS B 383 ASP B 385 -1 N LYS B 383 O VAL B 401 SHEET 1 AA7 4 ILE B 235 ASP B 237 0 SHEET 2 AA7 4 ILE B 199 THR B 203 1 N ILE B 199 O ILE B 236 SHEET 3 AA7 4 SER B 285 LEU B 291 1 O LEU B 291 N TYR B 202 SHEET 4 AA7 4 LYS B 275 ILE B 276 -1 N ILE B 276 O SER B 285 SHEET 1 AA8 4 ILE B 235 ASP B 237 0 SHEET 2 AA8 4 ILE B 199 THR B 203 1 N ILE B 199 O ILE B 236 SHEET 3 AA8 4 SER B 285 LEU B 291 1 O LEU B 291 N TYR B 202 SHEET 4 AA8 4 PHE B 316 VAL B 317 1 O PHE B 316 N PHE B 290 SHEET 1 AA9 2 THR B 338 TYR B 340 0 SHEET 2 AA9 2 ILE B 405 THR B 407 -1 O THR B 407 N THR B 338 SHEET 1 AB1 7 ALA C 84 THR C 89 0 SHEET 2 AB1 7 ILE C 55 THR C 60 1 N ILE C 55 O THR C 85 SHEET 3 AB1 7 PHE C 112 ILE C 114 1 O ILE C 113 N ALA C 58 SHEET 4 AB1 7 ILE C 136 TYR C 139 1 O VAL C 137 N ILE C 114 SHEET 5 AB1 7 TRP C 151 PHE C 155 1 O TRP C 151 N ALA C 138 SHEET 6 AB1 7 THR C 398 SER C 402 1 O SER C 402 N SER C 154 SHEET 7 AB1 7 LYS C 383 ASP C 385 -1 N ASP C 385 O ILE C 399 SHEET 1 AB2 4 ILE C 235 ASP C 237 0 SHEET 2 AB2 4 ILE C 199 THR C 203 1 N ILE C 199 O ILE C 236 SHEET 3 AB2 4 SER C 285 LEU C 291 1 O LEU C 291 N TYR C 202 SHEET 4 AB2 4 LYS C 275 ILE C 276 -1 N ILE C 276 O SER C 285 SHEET 1 AB3 4 ILE C 235 ASP C 237 0 SHEET 2 AB3 4 ILE C 199 THR C 203 1 N ILE C 199 O ILE C 236 SHEET 3 AB3 4 SER C 285 LEU C 291 1 O LEU C 291 N TYR C 202 SHEET 4 AB3 4 PHE C 316 VAL C 317 1 O PHE C 316 N PHE C 290 SHEET 1 AB4 2 THR C 338 TYR C 340 0 SHEET 2 AB4 2 ILE C 405 THR C 407 -1 O ILE C 405 N TYR C 340 LINK O THR A 312 NA NA A 501 1555 1555 2.43 LINK O ILE A 315 NA NA A 501 1555 1555 2.40 LINK O GLY A 333 NA NA A 501 1555 1555 2.41 LINK O ASP A 334 NA NA A 501 1555 1555 2.89 LINK OD1 ASN A 336 NA NA A 501 1555 1555 2.66 LINK O THR B 312 NA NA B 501 1555 1555 2.55 LINK O ILE B 315 NA NA B 501 1555 1555 2.53 LINK O GLY B 333 NA NA B 501 1555 1555 2.54 LINK O ASP B 334 NA NA B 501 1555 1555 2.66 LINK OD1 ASN B 336 NA NA B 501 1555 1555 2.51 LINK O THR C 312 NA NA C 501 1555 1555 2.44 LINK O ILE C 315 NA NA C 501 1555 1555 2.46 LINK O GLY C 333 NA NA C 501 1555 1555 2.48 LINK O ASP C 334 NA NA C 501 1555 1555 2.58 LINK OD1 ASN C 336 NA NA C 501 1555 1555 2.43 SITE 1 AC1 5 THR A 312 ILE A 315 GLY A 333 ASP A 334 SITE 2 AC1 5 ASN A 336 SITE 1 AC2 6 THR B 312 GLN B 313 ILE B 315 GLY B 333 SITE 2 AC2 6 ASP B 334 ASN B 336 SITE 1 AC3 5 THR C 312 ILE C 315 GLY C 333 ASP C 334 SITE 2 AC3 5 ASN C 336 CRYST1 136.478 136.478 139.132 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007327 0.004230 0.000000 0.00000 SCALE2 0.000000 0.008461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007187 0.00000