HEADER HYDROLASE 20-MAY-19 6RS0 TITLE GOLGI ALPHA-MANNOSIDASE II IN COMPLEX WITH (2S,3S,4R,5R)-1-(2- TITLE 2 (BENZYLOXY)ETHYL)-2-(HYDROXYMETHYL)PIPERIDINE-3,4,5-TRIOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-MANNOSIDASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GOLGI ALPHA-MANNOSIDASE II,MAN II,GOLGI ALPHA-MANNOSIDASE COMPND 5 IIA,MANNOSYL-OLIGOSACCHARIDE 1,3-1,6-ALPHA-MANNOSIDASE; COMPND 6 EC: 3.2.1.114; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: ALPHA-MAN-IIA, GMII, CG18802; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: HI FIVE KEYWDS MANNOSIDASE, GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ARMSTRONG,D.LAHAV,R.JOHNSON,C.L.KUO,T.J.M.BEENAKKER,C.DE BOER, AUTHOR 2 C.S.WONG,E.R.VAN RIJSSEL,M.DEBETS,P.P.GEURINK,H.OVAA,M.VAN DER AUTHOR 3 STELT,J.D.C.CODEE,J.M.F.G.AERTS,L.WU,H.S.OVERKLEEFT,G.J.DAVIES REVDAT 4 23-OCT-24 6RS0 1 REMARK REVDAT 3 24-JAN-24 6RS0 1 REMARK REVDAT 2 20-JAN-21 6RS0 1 JRNL REVDAT 1 08-JUL-20 6RS0 0 JRNL AUTH Z.ARMSTRONG,C.L.KUO,D.LAHAV,B.LIU,R.JOHNSON,T.J.M.BEENAKKER, JRNL AUTH 2 C.DE BOER,C.S.WONG,E.R.VAN RIJSSEL,M.F.DEBETS,B.I.FLOREA, JRNL AUTH 3 C.HISSINK,R.G.BOOT,P.P.GEURINK,H.OVAA,M.VAN DER STELT, JRNL AUTH 4 G.M.VAN DER MAREL,J.D.C.CODEE,J.M.F.G.AERTS,L.WU, JRNL AUTH 5 H.S.OVERKLEEFT,G.J.DAVIES JRNL TITL MANNO- EPI -CYCLOPHELLITOLS ENABLE ACTIVITY-BASED PROTEIN JRNL TITL 2 PROFILING OF HUMAN ALPHA-MANNOSIDASES AND DISCOVERY OF NEW JRNL TITL 3 GOLGI MANNOSIDASE II INHIBITORS. JRNL REF J.AM.CHEM.SOC. V. 142 13021 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 32605368 JRNL DOI 10.1021/JACS.0C03880 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 94987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4975 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 344 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.47000 REMARK 3 B22 (A**2) : 3.48000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8336 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7512 ; 0.035 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11322 ; 1.524 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17459 ; 2.326 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1003 ; 7.471 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 466 ;35.232 ;22.060 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1393 ;14.868 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;19.039 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1042 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9310 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1806 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4006 ; 2.880 ; 3.724 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4005 ; 2.880 ; 3.723 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5005 ; 4.005 ; 5.568 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100041 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 75.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BUB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM SUCCINATE, PH 7.4 10 % REMARK 280 PEG 3350 WITH MICROSEEDING, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.49200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.71850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.49200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.71850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 13 REMARK 465 ASP A 14 REMARK 465 PRO A 15 REMARK 465 ILE A 16 REMARK 465 ARG A 17 REMARK 465 PRO A 18 REMARK 465 PRO A 19 REMARK 465 LEU A 20 REMARK 465 LYS A 21 REMARK 465 VAL A 22 REMARK 465 ALA A 23 REMARK 465 ARG A 24 REMARK 465 SER A 25 REMARK 465 PRO A 26 REMARK 465 ARG A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 GLN A 30 REMARK 465 GLY A 291 REMARK 465 SER A 292 REMARK 465 PHE A 293 REMARK 465 THR A 602 REMARK 465 LEU A 603 REMARK 465 THR A 604 REMARK 465 LYS A 605 REMARK 465 LYS A 654 REMARK 465 ASN A 655 REMARK 465 PRO A 656 REMARK 465 THR A 657 REMARK 465 SER A 658 REMARK 465 PRO A 990 REMARK 465 GLU A 991 REMARK 465 GLU A 992 REMARK 465 HIS A 993 REMARK 465 SER A 1045 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 95 -89.64 -167.31 REMARK 500 ASP A 106 -62.30 -135.00 REMARK 500 THR A 162 -64.40 64.56 REMARK 500 GLN A 227 -52.84 -132.86 REMARK 500 ASP A 340 -175.84 -171.86 REMARK 500 PHE A 344 34.95 71.90 REMARK 500 SER A 411 -111.45 33.11 REMARK 500 TRP A 415 58.15 -94.36 REMARK 500 ASP A 538 76.17 -67.70 REMARK 500 ASP A 548 -79.79 -62.16 REMARK 500 PRO A 562 45.48 -80.82 REMARK 500 HIS A 600 -150.49 -100.42 REMARK 500 SER A 762 -15.01 89.36 REMARK 500 LEU A 785 76.95 -66.49 REMARK 500 ASP A 799 59.80 -91.09 REMARK 500 ILE A 831 70.09 -119.38 REMARK 500 SER A 833 -14.24 -147.49 REMARK 500 ASP A 839 -157.94 -119.45 REMARK 500 GLU A 875 34.17 70.35 REMARK 500 MET A1026 24.03 44.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 KGB A 1104 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 90 NE2 REMARK 620 2 ASP A 92 OD1 96.0 REMARK 620 3 ASP A 204 OD2 92.9 168.0 REMARK 620 4 HIS A 471 NE2 104.7 88.0 97.7 REMARK 620 5 KGB A1104 O3 157.8 85.0 83.7 97.6 REMARK 620 6 KGB A1104 O4 86.8 86.0 86.4 167.6 71.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KGB A 1104 DBREF 6RS0 A 13 1045 UNP Q24451 MAN2_DROME 76 1108 SEQRES 1 A 1033 ASP ASP PRO ILE ARG PRO PRO LEU LYS VAL ALA ARG SER SEQRES 2 A 1033 PRO ARG PRO GLY GLN CYS GLN ASP VAL VAL GLN ASP VAL SEQRES 3 A 1033 PRO ASN VAL ASP VAL GLN MET LEU GLU LEU TYR ASP ARG SEQRES 4 A 1033 MET SER PHE LYS ASP ILE ASP GLY GLY VAL TRP LYS GLN SEQRES 5 A 1033 GLY TRP ASN ILE LYS TYR ASP PRO LEU LYS TYR ASN ALA SEQRES 6 A 1033 HIS HIS LYS LEU LYS VAL PHE VAL VAL PRO HIS SER HIS SEQRES 7 A 1033 ASN ASP PRO GLY TRP ILE GLN THR PHE GLU GLU TYR TYR SEQRES 8 A 1033 GLN HIS ASP THR LYS HIS ILE LEU SER ASN ALA LEU ARG SEQRES 9 A 1033 HIS LEU HIS ASP ASN PRO GLU MET LYS PHE ILE TRP ALA SEQRES 10 A 1033 GLU ILE SER TYR PHE ALA ARG PHE TYR HIS ASP LEU GLY SEQRES 11 A 1033 GLU ASN LYS LYS LEU GLN MET LYS SER ILE VAL LYS ASN SEQRES 12 A 1033 GLY GLN LEU GLU PHE VAL THR GLY GLY TRP VAL MET PRO SEQRES 13 A 1033 ASP GLU ALA ASN SER HIS TRP ARG ASN VAL LEU LEU GLN SEQRES 14 A 1033 LEU THR GLU GLY GLN THR TRP LEU LYS GLN PHE MET ASN SEQRES 15 A 1033 VAL THR PRO THR ALA SER TRP ALA ILE ASP PRO PHE GLY SEQRES 16 A 1033 HIS SER PRO THR MET PRO TYR ILE LEU GLN LYS SER GLY SEQRES 17 A 1033 PHE LYS ASN MET LEU ILE GLN ARG THR HIS TYR SER VAL SEQRES 18 A 1033 LYS LYS GLU LEU ALA GLN GLN ARG GLN LEU GLU PHE LEU SEQRES 19 A 1033 TRP ARG GLN ILE TRP ASP ASN LYS GLY ASP THR ALA LEU SEQRES 20 A 1033 PHE THR HIS MET MET PRO PHE TYR SER TYR ASP ILE PRO SEQRES 21 A 1033 HIS THR CYS GLY PRO ASP PRO LYS VAL CYS CYS GLN PHE SEQRES 22 A 1033 ASP PHE LYS ARG MET GLY SER PHE GLY LEU SER CYS PRO SEQRES 23 A 1033 TRP LYS VAL PRO PRO ARG THR ILE SER ASP GLN ASN VAL SEQRES 24 A 1033 ALA ALA ARG SER ASP LEU LEU VAL ASP GLN TRP LYS LYS SEQRES 25 A 1033 LYS ALA GLU LEU TYR ARG THR ASN VAL LEU LEU ILE PRO SEQRES 26 A 1033 LEU GLY ASP ASP PHE ARG PHE LYS GLN ASN THR GLU TRP SEQRES 27 A 1033 ASP VAL GLN ARG VAL ASN TYR GLU ARG LEU PHE GLU HIS SEQRES 28 A 1033 ILE ASN SER GLN ALA HIS PHE ASN VAL GLN ALA GLN PHE SEQRES 29 A 1033 GLY THR LEU GLN GLU TYR PHE ASP ALA VAL HIS GLN ALA SEQRES 30 A 1033 GLU ARG ALA GLY GLN ALA GLU PHE PRO THR LEU SER GLY SEQRES 31 A 1033 ASP PHE PHE THR TYR ALA ASP ARG SER ASP ASN TYR TRP SEQRES 32 A 1033 SER GLY TYR TYR THR SER ARG PRO TYR HIS LYS ARG MET SEQRES 33 A 1033 ASP ARG VAL LEU MET HIS TYR VAL ARG ALA ALA GLU MET SEQRES 34 A 1033 LEU SER ALA TRP HIS SER TRP ASP GLY MET ALA ARG ILE SEQRES 35 A 1033 GLU GLU ARG LEU GLU GLN ALA ARG ARG GLU LEU SER LEU SEQRES 36 A 1033 PHE GLN HIS HIS ASP GLY ILE THR GLY THR ALA LYS THR SEQRES 37 A 1033 HIS VAL VAL VAL ASP TYR GLU GLN ARG MET GLN GLU ALA SEQRES 38 A 1033 LEU LYS ALA CYS GLN MET VAL MET GLN GLN SER VAL TYR SEQRES 39 A 1033 ARG LEU LEU THR LYS PRO SER ILE TYR SER PRO ASP PHE SEQRES 40 A 1033 SER PHE SER TYR PHE THR LEU ASP ASP SER ARG TRP PRO SEQRES 41 A 1033 GLY SER GLY VAL GLU ASP SER ARG THR THR ILE ILE LEU SEQRES 42 A 1033 GLY GLU ASP ILE LEU PRO SER LYS HIS VAL VAL MET HIS SEQRES 43 A 1033 ASN THR LEU PRO HIS TRP ARG GLU GLN LEU VAL ASP PHE SEQRES 44 A 1033 TYR VAL SER SER PRO PHE VAL SER VAL THR ASP LEU ALA SEQRES 45 A 1033 ASN ASN PRO VAL GLU ALA GLN VAL SER PRO VAL TRP SER SEQRES 46 A 1033 TRP HIS HIS ASP THR LEU THR LYS THR ILE HIS PRO GLN SEQRES 47 A 1033 GLY SER THR THR LYS TYR ARG ILE ILE PHE LYS ALA ARG SEQRES 48 A 1033 VAL PRO PRO MET GLY LEU ALA THR TYR VAL LEU THR ILE SEQRES 49 A 1033 SER ASP SER LYS PRO GLU HIS THR SER TYR ALA SER ASN SEQRES 50 A 1033 LEU LEU LEU ARG LYS ASN PRO THR SER LEU PRO LEU GLY SEQRES 51 A 1033 GLN TYR PRO GLU ASP VAL LYS PHE GLY ASP PRO ARG GLU SEQRES 52 A 1033 ILE SER LEU ARG VAL GLY ASN GLY PRO THR LEU ALA PHE SEQRES 53 A 1033 SER GLU GLN GLY LEU LEU LYS SER ILE GLN LEU THR GLN SEQRES 54 A 1033 ASP SER PRO HIS VAL PRO VAL HIS PHE LYS PHE LEU LYS SEQRES 55 A 1033 TYR GLY VAL ARG SER HIS GLY ASP ARG SER GLY ALA TYR SEQRES 56 A 1033 LEU PHE LEU PRO ASN GLY PRO ALA SER PRO VAL GLU LEU SEQRES 57 A 1033 GLY GLN PRO VAL VAL LEU VAL THR LYS GLY LYS LEU GLU SEQRES 58 A 1033 SER SER VAL SER VAL GLY LEU PRO SER VAL VAL HIS GLN SEQRES 59 A 1033 THR ILE MET ARG GLY GLY ALA PRO GLU ILE ARG ASN LEU SEQRES 60 A 1033 VAL ASP ILE GLY SER LEU ASP ASN THR GLU ILE VAL MET SEQRES 61 A 1033 ARG LEU GLU THR HIS ILE ASP SER GLY ASP ILE PHE TYR SEQRES 62 A 1033 THR ASP LEU ASN GLY LEU GLN PHE ILE LYS ARG ARG ARG SEQRES 63 A 1033 LEU ASP LYS LEU PRO LEU GLN ALA ASN TYR TYR PRO ILE SEQRES 64 A 1033 PRO SER GLY MET PHE ILE GLU ASP ALA ASN THR ARG LEU SEQRES 65 A 1033 THR LEU LEU THR GLY GLN PRO LEU GLY GLY SER SER LEU SEQRES 66 A 1033 ALA SER GLY GLU LEU GLU ILE MET GLN ASP ARG ARG LEU SEQRES 67 A 1033 ALA SER ASP ASP GLU ARG GLY LEU GLY GLN GLY VAL LEU SEQRES 68 A 1033 ASP ASN LYS PRO VAL LEU HIS ILE TYR ARG LEU VAL LEU SEQRES 69 A 1033 GLU LYS VAL ASN ASN CYS VAL ARG PRO SER GLU LEU HIS SEQRES 70 A 1033 PRO ALA GLY TYR LEU THR SER ALA ALA HIS LYS ALA SER SEQRES 71 A 1033 GLN SER LEU LEU ASP PRO LEU ASP LYS PHE ILE PHE ALA SEQRES 72 A 1033 GLU ASN GLU TRP ILE GLY ALA GLN GLY GLN PHE GLY GLY SEQRES 73 A 1033 ASP HIS PRO SER ALA ARG GLU ASP LEU ASP VAL SER VAL SEQRES 74 A 1033 MET ARG ARG LEU THR LYS SER SER ALA LYS THR GLN ARG SEQRES 75 A 1033 VAL GLY TYR VAL LEU HIS ARG THR ASN LEU MET GLN CYS SEQRES 76 A 1033 GLY THR PRO GLU GLU HIS THR GLN LYS LEU ASP VAL CYS SEQRES 77 A 1033 HIS LEU LEU PRO ASN VAL ALA ARG CYS GLU ARG THR THR SEQRES 78 A 1033 LEU THR PHE LEU GLN ASN LEU GLU HIS LEU ASP GLY MET SEQRES 79 A 1033 VAL ALA PRO GLU VAL CYS PRO MET GLU THR ALA ALA TYR SEQRES 80 A 1033 VAL SER SER HIS SER SER HET ZN A1101 1 HET EDO A1102 4 HET EDO A1103 4 HET KGB A1104 12 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM KGB (2~{S},3~{S},4~{R})-2-(HYDROXYMETHYL)-1-(2- HETNAM 2 KGB PHENYLMETHOXYETHYL)PIPERIDINE-3,4,5-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 KGB C15 H23 N O5 FORMUL 6 HOH *450(H2 O) HELIX 1 AA1 MET A 45 MET A 52 1 8 HELIX 2 AA2 ASP A 71 TYR A 75 5 5 HELIX 3 AA3 THR A 98 ASP A 106 1 9 HELIX 4 AA4 ASP A 106 ASN A 121 1 16 HELIX 5 AA5 GLU A 130 HIS A 139 1 10 HELIX 6 AA6 GLY A 142 ASN A 155 1 14 HELIX 7 AA7 HIS A 174 ASN A 194 1 21 HELIX 8 AA8 PRO A 210 LYS A 218 1 9 HELIX 9 AA9 HIS A 230 GLN A 240 1 11 HELIX 10 AB1 ASP A 270 THR A 274 5 5 HELIX 11 AB2 ASP A 278 CYS A 283 1 6 HELIX 12 AB3 GLN A 284 MET A 290 5 7 HELIX 13 AB4 ASN A 310 GLU A 327 1 18 HELIX 14 AB5 GLN A 346 GLN A 367 1 22 HELIX 15 AB6 ALA A 368 PHE A 370 5 3 HELIX 16 AB7 THR A 378 ALA A 392 1 15 HELIX 17 AB8 SER A 416 THR A 420 5 5 HELIX 18 AB9 ARG A 422 TRP A 445 1 24 HELIX 19 AC1 ASP A 449 ALA A 452 5 4 HELIX 20 AC2 ARG A 453 GLN A 469 1 17 HELIX 21 AC3 LYS A 479 THR A 510 1 32 HELIX 22 AC4 PRO A 823 ASN A 827 5 5 HELIX 23 AC5 THR A 915 ASP A 927 1 13 HELIX 24 AC6 ASP A 998 LEU A 1002 5 5 SHEET 1 AA1 6 VAL A 43 GLN A 44 0 SHEET 2 AA1 6 THR A 399 SER A 401 1 O SER A 401 N VAL A 43 SHEET 3 AA1 6 GLU A 244 TRP A 247 1 N LEU A 246 O LEU A 400 SHEET 4 AA1 6 LEU A 259 MET A 263 -1 O THR A 261 N PHE A 245 SHEET 5 AA1 6 ASN A 223 ILE A 226 1 N ILE A 226 O HIS A 262 SHEET 6 AA1 6 ALA A 199 ALA A 202 1 N SER A 200 O ASN A 223 SHEET 1 AA2 3 VAL A 333 LEU A 338 0 SHEET 2 AA2 3 LEU A 81 PRO A 87 1 N LYS A 82 O LEU A 334 SHEET 3 AA2 3 VAL A 372 PHE A 376 1 O GLN A 373 N VAL A 83 SHEET 1 AA3 2 PHE A 126 TRP A 128 0 SHEET 2 AA3 2 LEU A 158 PHE A 160 1 O GLU A 159 N PHE A 126 SHEET 1 AA4 6 PHE A 524 ASP A 527 0 SHEET 2 AA4 6 ASP A 930 PHE A 934 -1 O ILE A 933 N THR A 525 SHEET 3 AA4 6 SER A 552 ASN A 559 -1 N VAL A 556 O PHE A 932 SHEET 4 AA4 6 GLY A 628 ILE A 636 -1 O TYR A 632 N VAL A 555 SHEET 5 AA4 6 VAL A 578 ASP A 582 -1 N THR A 581 O VAL A 633 SHEET 6 AA4 6 PRO A 587 VAL A 588 -1 O VAL A 588 N VAL A 580 SHEET 1 AA5 5 PHE A 524 ASP A 527 0 SHEET 2 AA5 5 ASP A 930 PHE A 934 -1 O ILE A 933 N THR A 525 SHEET 3 AA5 5 SER A 552 ASN A 559 -1 N VAL A 556 O PHE A 932 SHEET 4 AA5 5 GLY A 628 ILE A 636 -1 O TYR A 632 N VAL A 555 SHEET 5 AA5 5 GLN A 945 PHE A 946 -1 O PHE A 946 N LEU A 629 SHEET 1 AA6 5 THR A 542 ILE A 543 0 SHEET 2 AA6 5 ARG A 565 VAL A 573 1 O TYR A 572 N ILE A 543 SHEET 3 AA6 5 HIS A 608 VAL A 624 -1 O VAL A 624 N ARG A 565 SHEET 4 AA6 5 ALA A 590 HIS A 599 -1 N GLN A 591 O ILE A 619 SHEET 5 AA6 5 THR A 644 TYR A 646 1 O SER A 645 N ALA A 590 SHEET 1 AA712 LYS A 669 GLY A 671 0 SHEET 2 AA712 SER A 648 LEU A 652 1 N ASN A 649 O LYS A 669 SHEET 3 AA712 VAL A 745 LYS A 749 -1 O VAL A 747 N LEU A 650 SHEET 4 AA712 SER A 754 LEU A 760 -1 O SER A 757 N LEU A 746 SHEET 5 AA712 VAL A 763 MET A 769 -1 O MET A 769 N SER A 754 SHEET 6 AA712 GLU A 775 VAL A 780 -1 O GLU A 775 N ILE A 768 SHEET 7 AA712 VAL A 888 LYS A 898 -1 O VAL A 888 N VAL A 780 SHEET 8 AA712 THR A 842 THR A 848 -1 N ARG A 843 O GLU A 897 SHEET 9 AA712 GLY A 834 GLU A 838 -1 N MET A 835 O LEU A 846 SHEET 10 AA712 ILE A 803 LEU A 808 -1 N TYR A 805 O PHE A 836 SHEET 11 AA712 GLN A 812 ARG A 817 -1 O ARG A 816 N PHE A 804 SHEET 12 AA712 ALA A 911 GLY A 912 -1 O GLY A 912 N PHE A 813 SHEET 1 AA8 4 ILE A 676 ARG A 679 0 SHEET 2 AA8 4 THR A 685 PHE A 688 -1 O PHE A 688 N ILE A 676 SHEET 3 AA8 4 LEU A 694 GLN A 698 -1 O GLN A 698 N THR A 685 SHEET 4 AA8 4 VAL A 706 PRO A 707 -1 O VAL A 706 N ILE A 697 SHEET 1 AA9 6 SER A 736 PRO A 737 0 SHEET 2 AA9 6 HIS A 709 TYR A 715 -1 N LYS A 714 O SER A 736 SHEET 3 AA9 6 THR A 788 GLU A 795 -1 O ARG A 793 N LYS A 711 SHEET 4 AA9 6 GLU A 861 ARG A 869 -1 O GLN A 866 N ILE A 790 SHEET 5 AA9 6 LEU A 852 SER A 855 -1 N GLY A 853 O MET A 865 SHEET 6 AA9 6 TYR A 829 ILE A 831 -1 N TYR A 829 O GLY A 854 SHEET 1 AB1 5 LEU A 957 ARG A 964 0 SHEET 2 AB1 5 GLN A 973 ARG A 981 -1 O GLY A 976 N ARG A 963 SHEET 3 AB1 5 GLU A1035 HIS A1043 -1 O ALA A1037 N LEU A 979 SHEET 4 AB1 5 VAL A1006 THR A1012 -1 N ARG A1008 O SER A1042 SHEET 5 AB1 5 ASN A1019 HIS A1022 -1 O LEU A1020 N ARG A1011 SSBOND 1 CYS A 31 CYS A 1032 1555 1555 2.02 SSBOND 2 CYS A 275 CYS A 282 1555 1555 2.04 SSBOND 3 CYS A 283 CYS A 297 1555 1555 2.11 SSBOND 4 CYS A 902 CYS A 987 1555 1555 2.05 SSBOND 5 CYS A 1000 CYS A 1009 1555 1555 1.96 LINK NE2 HIS A 90 ZN ZN A1101 1555 1555 2.11 LINK OD1 ASP A 92 ZN ZN A1101 1555 1555 1.97 LINK OD2 ASP A 204 ZN ZN A1101 1555 1555 1.96 LINK NE2 HIS A 471 ZN ZN A1101 1555 1555 2.16 LINK ZN ZN A1101 O3 KGB A1104 1555 1555 2.22 LINK ZN ZN A1101 O4 KGB A1104 1555 1555 2.30 CISPEP 1 PHE A 405 THR A 406 0 1.82 CISPEP 2 TRP A 531 PRO A 532 0 -7.53 SITE 1 AC1 5 HIS A 90 ASP A 92 ASP A 204 HIS A 471 SITE 2 AC1 5 KGB A1104 SITE 1 AC2 6 ARG A 176 ASN A 177 MET A 433 HOH A1293 SITE 2 AC2 6 HOH A1337 HOH A1458 SITE 1 AC3 6 LYS A 63 TYR A 267 HIS A 273 HOH A1283 SITE 2 AC3 6 HOH A1319 HOH A1476 SITE 1 AC4 13 HIS A 90 ASP A 92 TRP A 95 ASP A 204 SITE 2 AC4 13 PHE A 206 ARG A 228 TYR A 269 ASP A 341 SITE 3 AC4 13 HIS A 471 ASP A 472 TYR A 727 ARG A 876 SITE 4 AC4 13 ZN A1101 CRYST1 88.984 91.437 132.460 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007549 0.00000