HEADER ANTIMICROBIAL PROTEIN 21-MAY-19 6RSG TITLE NMR STRUCTURE OF PLEUROCIDIN VA IN SDS MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLEUROCIDIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: ANALOGUE OF THE ANTIMICROBIAL PEPTIDE PLEUROCIDIN, COMPND 6 ORIGINALLY EXTRACTED FROM WINTER FLOUNDER FISH, OBTAINED THROUGH COMPND 7 SEQUENCE OPTIMISATION. SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PSEUDOPLEURONECTES AMERICANUS; SOURCE 4 ORGANISM_COMMON: WINTER FLOUNDER; SOURCE 5 ORGANISM_TAXID: 8265 KEYWDS AMP, PLEUROCIDIN ANALOGUE, WINTER FLOUNDER, SDS MICELLES, SEQUENCE KEYWDS 2 OPTIMIZATION, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 50 AUTHOR G.MANZO,A.J.MASON REVDAT 2 14-JUN-23 6RSG 1 REMARK REVDAT 1 09-DEC-20 6RSG 0 JRNL AUTH G.MANZO,C.K.HIND,P.M.FERGUSON,R.T.AMISON,A.C.HODGSON-CASSON, JRNL AUTH 2 K.A.CIAZYNSKA,B.J.WELLER,M.CLARKE,C.LAM,R.C.H.MAN, JRNL AUTH 3 B.G.O.SHAUGHNESSY,M.CLIFFORD,T.T.BUI,A.F.DRAKE,R.A.ATKINSON, JRNL AUTH 4 J.K.W.LAM,S.C.PITCHFORD,C.P.PAGE,D.A.PHOENIX,C.D.LORENZ, JRNL AUTH 5 J.M.SUTTON,A.J.MASON JRNL TITL A PLEUROCIDIN ANALOGUE WITH GREATER CONFORMATIONAL JRNL TITL 2 FLEXIBILITY, ENHANCED ANTIMICROBIAL POTENCY AND IN VIVO JRNL TITL 3 THERAPEUTIC EFFICACY. JRNL REF COMMUN BIOL V. 3 697 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 33247193 JRNL DOI 10.1038/S42003-020-01420-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYNAMO, NMRPIPE REMARK 3 AUTHORS : DELAGLIO AND KUSZEWSKI (DYNAMO), DELAGLIO, REMARK 3 GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX (NMRPIPE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RSG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102494. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.00 REMARK 210 IONIC STRENGTH : ND REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM NA PLEUROCIDIN VA, 50 MM REMARK 210 U-98% 2D DEUTERATED SODIUM DODECYL SULPHATE (SDS-D25), 5 MM U-98% REMARK 210 2D TRIS(HYDROXYMETHYL-D3)-AMINO-D2-METHANE, 0.05 % W/W U-99.9% REMARK 210 2D 3-(TRIMETHYLSILYL)PROPIONIC-2,2,3,3-D4 ACID, SODIUM SALT, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 2 -26.15 -172.06 REMARK 500 1 SER A 4 140.25 -170.79 REMARK 500 1 PHE A 6 -70.72 -64.24 REMARK 500 1 LYS A 7 -94.29 51.78 REMARK 500 1 ALA A 12 176.96 -56.43 REMARK 500 1 LYS A 14 -67.44 -171.05 REMARK 500 1 ALA A 16 47.49 -159.68 REMARK 500 1 LYS A 18 13.24 54.12 REMARK 500 1 ALA A 19 -9.59 -165.84 REMARK 500 1 ALA A 20 103.16 55.05 REMARK 500 1 LEU A 21 -77.05 60.36 REMARK 500 1 THR A 22 28.17 -170.46 REMARK 500 1 TYR A 24 -5.78 -170.87 REMARK 500 2 SER A 4 -171.98 58.38 REMARK 500 2 PHE A 5 34.88 -157.50 REMARK 500 2 LYS A 7 -100.29 -60.31 REMARK 500 2 ALA A 9 -30.26 -172.79 REMARK 500 2 ALA A 10 -173.19 50.23 REMARK 500 2 HIS A 11 -150.68 -72.31 REMARK 500 2 ALA A 12 105.17 54.98 REMARK 500 2 LYS A 14 118.29 -166.85 REMARK 500 2 HIS A 15 7.10 56.78 REMARK 500 2 ALA A 16 29.20 -169.26 REMARK 500 2 LYS A 18 -76.26 60.55 REMARK 500 2 ALA A 20 86.14 57.92 REMARK 500 2 THR A 22 95.26 53.85 REMARK 500 2 HIS A 23 -145.78 58.70 REMARK 500 2 TYR A 24 38.17 -166.39 REMARK 500 3 PHE A 5 90.22 54.69 REMARK 500 3 PHE A 6 -16.37 -164.07 REMARK 500 3 LYS A 7 -25.34 -171.13 REMARK 500 3 ALA A 12 -94.00 53.28 REMARK 500 3 LYS A 14 -49.66 -170.89 REMARK 500 3 ALA A 16 35.98 -169.58 REMARK 500 3 LEU A 21 -2.87 61.51 REMARK 500 3 THR A 22 -6.22 177.83 REMARK 500 3 HIS A 23 82.94 56.06 REMARK 500 3 TYR A 24 163.08 55.64 REMARK 500 4 SER A 4 -171.27 50.42 REMARK 500 4 PHE A 5 -60.70 -163.98 REMARK 500 4 ALA A 10 8.54 -169.59 REMARK 500 4 ALA A 12 38.57 -165.75 REMARK 500 4 LYS A 14 -55.91 -170.18 REMARK 500 4 HIS A 15 -71.29 -58.62 REMARK 500 4 LYS A 18 12.35 -154.75 REMARK 500 4 ALA A 19 -36.05 -163.60 REMARK 500 4 HIS A 23 134.85 59.85 REMARK 500 4 TYR A 24 -62.82 -170.11 REMARK 500 5 PHE A 5 88.27 -166.70 REMARK 500 5 LYS A 8 -101.02 -58.87 REMARK 500 REMARK 500 THIS ENTRY HAS 564 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34405 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF PLEUROCIDIN VA IN SDS MICELLES DBREF 6RSG A 1 25 UNP P81941 PLE1_PSEAM 23 47 SEQADV 6RSG ALA A 12 UNP P81941 VAL 34 ENGINEERED MUTATION SEQADV 6RSG ALA A 16 UNP P81941 VAL 38 ENGINEERED MUTATION SEQRES 1 A 25 GLY TRP GLY SER PHE PHE LYS LYS ALA ALA HIS ALA GLY SEQRES 2 A 25 LYS HIS ALA GLY LYS ALA ALA LEU THR HIS TYR LEU CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1