HEADER OXIDOREDUCTASE 21-MAY-19 6RSK TITLE CYTOCHROME C CO-CRYSTALLIZED WITH 20 EQ. SULFONATO-CALIX[8]ARENE AND TITLE 2 15 EQ. SPERMINE - STRUCTURE II COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 GENE: CYC1, YJR048W, J1653; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MOLECULAR GLUES, MOLECULAR SWITCH, SPERMINE, POLYAMINE, CALIXARENE, KEYWDS 2 SUPRAMOLECULAR CHEMISTRY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ENGILBERGE,P.B.CROWLEY REVDAT 3 24-JAN-24 6RSK 1 LINK REVDAT 2 23-OCT-19 6RSK 1 JRNL REVDAT 1 18-SEP-19 6RSK 0 JRNL AUTH S.ENGILBERGE,M.L.RENNIE,E.DUMONT,P.B.CROWLEY JRNL TITL TUNING PROTEIN FRAMEWORKS VIA AUXILIARY SUPRAMOLECULAR JRNL TITL 2 INTERACTIONS. JRNL REF ACS NANO V. 13 10343 2019 JRNL REFN ESSN 1936-086X JRNL PMID 31490058 JRNL DOI 10.1021/ACSNANO.9B04115 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.32 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.26 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 416 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2200 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 400 REMARK 3 BIN R VALUE (WORKING SET) : 0.2208 REMARK 3 BIN FREE R VALUE : 0.1955 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.85 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 773 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.70760 REMARK 3 B22 (A**2) : -1.70760 REMARK 3 B33 (A**2) : 3.41520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.243 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.191 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.368 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.181 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4244 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7484 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 962 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 4 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 602 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4244 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 216 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4178 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.64 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.08 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -31.4782 -5.5307 -1.0741 REMARK 3 T TENSOR REMARK 3 T11: -0.0438 T22: 0.0015 REMARK 3 T33: 0.0047 T12: 0.0225 REMARK 3 T13: 0.0047 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.3287 L22: 0.4152 REMARK 3 L33: 0.4642 L12: -0.4182 REMARK 3 L13: 0.2849 L23: -0.0831 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: 0.0038 S13: 0.0091 REMARK 3 S21: 0.0097 S22: -0.0141 S23: 0.0133 REMARK 3 S31: 0.0129 S32: 0.0208 S33: 0.0154 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -36.4426 13.2852 32.9527 REMARK 3 T TENSOR REMARK 3 T11: -0.0025 T22: 0.0109 REMARK 3 T33: -0.0372 T12: -0.1000 REMARK 3 T13: 0.0451 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.3261 REMARK 3 L33: 0.4392 L12: 0.0194 REMARK 3 L13: -0.3781 L23: 0.0174 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: 0.0100 S13: 0.0138 REMARK 3 S21: 0.0145 S22: 0.0010 S23: 0.0061 REMARK 3 S31: 0.0148 S32: -0.0034 S33: 0.0042 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -34.2951 17.0425 29.3000 REMARK 3 T TENSOR REMARK 3 T11: 0.0010 T22: -0.0053 REMARK 3 T33: 0.0007 T12: -0.0040 REMARK 3 T13: 0.0019 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.1791 L22: 0.0811 REMARK 3 L33: 0.0712 L12: 0.2076 REMARK 3 L13: -0.1353 L23: -0.0646 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.0065 S13: 0.0008 REMARK 3 S21: 0.0025 S22: -0.0013 S23: -0.0015 REMARK 3 S31: -0.0047 S32: 0.0082 S33: 0.0019 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RSK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.306 REMARK 200 RESOLUTION RANGE LOW (A) : 71.035 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.90 REMARK 200 R MERGE (I) : 0.19600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GD9 REMARK 200 REMARK 200 REMARK: RED CUBIC CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.15 M NACL, 2.2 M REMARK 280 AMMONIUM SULFATE, 0.04 M SULFONATO-CALIX[8]ARENE, 0.03 M REMARK 280 SPERMINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.76950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.22950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.22950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.15425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.22950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.22950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.38475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.22950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.22950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.15425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.22950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.22950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.38475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.76950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 17 CAC HEC A 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A -4 -61.10 -97.53 REMARK 500 LYS A 27 -135.44 -114.01 REMARK 500 ASN A 70 90.44 -161.62 REMARK 500 MET A 80 149.49 -171.62 REMARK 500 ALA A 81 54.22 -90.26 REMARK 500 LYS B 27 -136.64 -111.63 REMARK 500 ASN B 70 87.59 -158.94 REMARK 500 ALA B 81 52.46 -91.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 94.2 REMARK 620 3 HEC A 201 NB 91.4 90.1 REMARK 620 4 HEC A 201 NC 87.7 177.7 88.7 REMARK 620 5 HEC A 201 ND 91.6 90.9 176.8 90.2 REMARK 620 6 HOH A 338 O 174.3 90.5 85.3 87.5 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 201 NA 91.9 REMARK 620 3 HEC B 201 NB 86.9 88.2 REMARK 620 4 HEC B 201 NC 88.1 178.8 90.6 REMARK 620 5 HEC B 201 ND 92.6 90.9 178.9 90.4 REMARK 620 6 HOH B 314 O 175.9 92.1 92.5 87.8 88.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC B 201 and CYS B REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC B 201 and CYS B REMARK 800 14 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GD9 RELATED DB: PDB REMARK 900 6GD9 CONTAINS THE SAME PROTEIN COMPLEXED WITH SULFONATO-CALIX[8] REMARK 900 ARENE REMARK 900 RELATED ID: 6GDA RELATED DB: PDB REMARK 900 6GDA CONTAINS THE SAME PROTEIN COMPLEXED WITH SULFONATO-CALIX[8] REMARK 900 ARENE AND SOAK WITH SPERMINE DBREF 6RSK A -4 103 UNP P00044 CYC1_YEAST 3 109 DBREF 6RSK B -4 103 UNP P00044 CYC1_YEAST 3 109 SEQADV 6RSK ALA A -5 UNP P00044 EXPRESSION TAG SEQADV 6RSK THR A 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQADV 6RSK ALA B -5 UNP P00044 EXPRESSION TAG SEQADV 6RSK THR B 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQRES 1 A 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU SEQRES 1 B 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 B 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 B 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 B 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 B 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 B 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 B 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 B 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 B 108 LYS ALA THR GLU HET HEC A 201 43 HET EVB A 202 96 HET EVB A 203 96 HET EVB A 204 96 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HET SO4 A 208 5 HET SO4 A 209 5 HET SO4 A 210 5 HET SPM A 211 14 HET SPM A 212 14 HET HEC B 201 43 HET EVB B 202 96 HET EVB B 203 96 HET EVB B 204 96 HET SO4 B 205 5 HET SO4 B 206 5 HET SO4 B 207 5 HET SO4 B 208 5 HET SO4 B 209 5 HET SPM B 210 14 HET SPM B 211 14 HETNAM HEC HEME C HETNAM EVB SULFONATO-CALIX[8]ARENE HETNAM SO4 SULFATE ION HETNAM SPM SPERMINE FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 EVB 6(C56 H48 O32 S8) FORMUL 7 SO4 11(O4 S 2-) FORMUL 13 SPM 4(C10 H26 N4) FORMUL 26 HOH *179(H2 O) HELIX 1 AA1 SER A 2 CYS A 14 1 13 HELIX 2 AA2 THR A 49 ASN A 56 1 8 HELIX 3 AA3 ASP A 60 ASN A 70 1 11 HELIX 4 AA4 ASN A 70 ILE A 75 1 6 HELIX 5 AA5 LYS A 87 THR A 102 1 16 HELIX 6 AA6 SER B 2 CYS B 14 1 13 HELIX 7 AA7 THR B 49 ASN B 56 1 8 HELIX 8 AA8 ASP B 60 ASN B 70 1 11 HELIX 9 AA9 ASN B 70 ILE B 75 1 6 HELIX 10 AB1 LYS B 87 THR B 102 1 16 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.82 LINK SG CYS A 17 CBC HEC A 201 1555 1555 1.99 LINK SG CYS B 14 CAB HEC B 201 1555 1555 1.81 LINK SG CYS B 17 CBC HEC B 201 1555 1555 1.79 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.00 LINK FE HEC A 201 O HOH A 338 1555 1555 2.11 LINK NE2 HIS B 18 FE HEC B 201 1555 1555 2.14 LINK FE HEC B 201 O HOH B 314 1555 1555 2.12 SITE 1 AC1 25 ARG A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 25 VAL A 28 GLY A 29 PRO A 30 ILE A 35 SITE 3 AC1 25 SER A 40 GLY A 41 TYR A 46 TYR A 48 SITE 4 AC1 25 THR A 49 ASN A 52 TRP A 59 MET A 64 SITE 5 AC1 25 TYR A 67 LEU A 68 THR A 78 LYS A 79 SITE 6 AC1 25 PHE A 82 LEU A 94 HOH A 331 HOH A 334 SITE 7 AC1 25 HOH A 338 SITE 1 AC2 32 LYS A 11 THR A 12 LEU A 15 GLN A 16 SITE 2 AC2 32 THR A 19 GLU A 21 GLY A 24 PRO A 25 SITE 3 AC2 32 LYS A 27 HIS A 39 GLY A 41 GLN A 42 SITE 4 AC2 32 TYR A 46 TYR A 48 ASP A 50 ILE A 53 SITE 5 AC2 32 LYS A 54 ASN A 56 HOH A 303 HOH A 315 SITE 6 AC2 32 HOH A 316 HOH A 321 HOH A 345 HOH A 350 SITE 7 AC2 32 HOH A 352 HOH A 353 HOH A 354 HOH A 359 SITE 8 AC2 32 HOH A 374 HOH A 375 HOH A 382 LYS B 22 SITE 1 AC3 24 ALA A -1 GLY A 1 ALA A 3 LYS A 4 SITE 2 AC3 24 LYS A 5 THR A 8 THR A 96 TYR A 97 SITE 3 AC3 24 LYS A 99 LYS A 100 SPM A 211 SPM A 212 SITE 4 AC3 24 HOH A 305 HOH A 306 HOH A 310 HOH A 311 SITE 5 AC3 24 HOH A 337 HOH A 343 HOH A 344 HOH A 347 SITE 6 AC3 24 HOH A 359 HOH A 361 HOH A 362 HOH A 368 SITE 1 AC4 12 ASN A 70 LYS A 72 LYS A 73 LYS A 79 SITE 2 AC4 12 MET A 80 ALA A 81 PHE A 82 GLY A 83 SITE 3 AC4 12 SO4 A 206 HOH A 336 EVB B 203 SPM B 210 SITE 1 AC5 5 ARG A 13 GLY A 84 LEU A 85 LYS A 86 SITE 2 AC5 5 HOH A 329 SITE 1 AC6 6 ARG A 13 ALA A 81 PHE A 82 GLY A 83 SITE 2 AC6 6 EVB A 204 HOH A 349 SITE 1 AC7 2 ASN A 70 LYS A 86 SITE 1 AC8 4 GLU A -4 GLU A 88 ARG A 91 HOH A 342 SITE 1 AC9 2 LYS A 55 HOH A 333 SITE 1 AD1 5 GLU A 21 LYS A 22 HOH A 309 HOH A 312 SITE 2 AD1 5 HOH A 357 SITE 1 AD2 2 EVB A 203 HOH A 328 SITE 1 AD3 1 EVB A 203 SITE 1 AD4 24 LYS A 22 LYS B 11 LEU B 15 GLN B 16 SITE 2 AD4 24 THR B 19 GLU B 21 GLY B 24 PRO B 25 SITE 3 AD4 24 LYS B 27 HIS B 39 GLY B 41 GLN B 42 SITE 4 AD4 24 TYR B 46 SER B 47 TYR B 48 ASP B 50 SITE 5 AD4 24 ILE B 53 LYS B 54 ASN B 56 HOH B 303 SITE 6 AD4 24 HOH B 310 HOH B 313 HOH B 324 HOH B 328 SITE 1 AD5 11 EVB A 204 ASN B 70 LYS B 72 MET B 80 SITE 2 AD5 11 ALA B 81 PHE B 82 GLY B 83 SO4 B 206 SITE 3 AD5 11 SPM B 210 HOH B 326 HOH B 327 SITE 1 AD6 10 ALA B -1 GLY B 1 ALA B 3 LYS B 4 SITE 2 AD6 10 ALA B 7 THR B 96 TYR B 97 LYS B 100 SITE 3 AD6 10 SPM B 211 HOH B 317 SITE 1 AD7 3 ARG B 13 GLY B 84 LYS B 86 SITE 1 AD8 5 ARG B 13 PHE B 82 GLY B 83 GLY B 84 SITE 2 AD8 5 EVB B 203 SITE 1 AD9 3 GLU B 21 LYS B 22 HOH B 305 SITE 1 AE1 1 SPM B 211 SITE 1 AE2 1 LYS B 55 SITE 1 AE3 2 EVB A 204 EVB B 203 SITE 1 AE4 2 EVB B 204 SO4 B 208 SITE 1 AE5 25 ARG B 13 CYS B 14 LEU B 15 GLN B 16 SITE 2 AE5 25 HIS B 18 LYS B 27 VAL B 28 GLY B 29 SITE 3 AE5 25 ILE B 35 SER B 40 GLY B 41 TYR B 46 SITE 4 AE5 25 TYR B 48 THR B 49 ASN B 52 TRP B 59 SITE 5 AE5 25 TYR B 67 LEU B 68 THR B 78 LYS B 79 SITE 6 AE5 25 PHE B 82 LEU B 94 HOH B 304 HOH B 306 SITE 7 AE5 25 HOH B 314 SITE 1 AE6 24 PHE B 10 ARG B 13 LEU B 15 GLN B 16 SITE 2 AE6 24 CYS B 17 HIS B 18 VAL B 28 ILE B 35 SITE 3 AE6 24 SER B 40 GLY B 41 TYR B 46 TYR B 48 SITE 4 AE6 24 THR B 49 ASN B 52 TRP B 59 TYR B 67 SITE 5 AE6 24 LEU B 68 THR B 78 LYS B 79 PHE B 82 SITE 6 AE6 24 LEU B 94 HOH B 304 HOH B 306 HOH B 314 CRYST1 100.459 100.459 89.539 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009954 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009954 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011168 0.00000