HEADER OXIDOREDUCTASE 21-MAY-19 6RSL TITLE CYTOCHROME C CO-CRYSTALLIZED WITH 10 EQ. SULFONATO-CALIX[8]ARENE AND TITLE 2 25 EQ. SPERMINE (DRY-COATING METHOD) - STRUCTURE III COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: CYC1, YJR048W, J1653; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MOLECULAR GLUES, MOLECULAR SWITCH, SPERMINE, POLYAMINE, CALIXARENE, KEYWDS 2 SUPRAMOLECULAR CHEMISTRY, OXIDOREDUCTASE, CYTC EXPDTA X-RAY DIFFRACTION AUTHOR S.ENGILBERGE,P.B.CROWLEY REVDAT 3 24-JAN-24 6RSL 1 LINK REVDAT 2 23-OCT-19 6RSL 1 JRNL REVDAT 1 18-SEP-19 6RSL 0 JRNL AUTH S.ENGILBERGE,M.L.RENNIE,E.DUMONT,P.B.CROWLEY JRNL TITL TUNING PROTEIN FRAMEWORKS VIA AUXILIARY SUPRAMOLECULAR JRNL TITL 2 INTERACTIONS. JRNL REF ACS NANO V. 13 10343 2019 JRNL REFN ESSN 1936-086X JRNL PMID 31490058 JRNL DOI 10.1021/ACSNANO.9B04115 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 33634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.4061 - 4.5497 0.95 2739 143 0.2151 0.2360 REMARK 3 2 4.5497 - 3.6115 0.98 2682 140 0.1970 0.1973 REMARK 3 3 3.6115 - 3.1550 0.99 2692 138 0.2176 0.2891 REMARK 3 4 3.1550 - 2.8665 1.00 2695 133 0.2597 0.2396 REMARK 3 5 2.8665 - 2.6611 1.00 2654 154 0.2574 0.2867 REMARK 3 6 2.6611 - 2.5042 1.00 2683 117 0.2592 0.3372 REMARK 3 7 2.5042 - 2.3788 1.00 2648 149 0.2636 0.2626 REMARK 3 8 2.3788 - 2.2752 0.99 2605 148 0.2783 0.3547 REMARK 3 9 2.2752 - 2.1876 1.00 2652 142 0.2863 0.3401 REMARK 3 10 2.1876 - 2.1121 1.00 2629 135 0.3002 0.3094 REMARK 3 11 2.1121 - 2.0461 1.00 2656 129 0.3147 0.2893 REMARK 3 12 2.0461 - 1.9876 1.00 2642 129 0.3205 0.3165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2576 REMARK 3 ANGLE : 1.392 3606 REMARK 3 CHIRALITY : 0.048 238 REMARK 3 PLANARITY : 0.008 358 REMARK 3 DIHEDRAL : 29.064 904 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -5 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2854 -15.8968 -14.9952 REMARK 3 T TENSOR REMARK 3 T11: 0.7597 T22: 0.7275 REMARK 3 T33: 0.7225 T12: -0.7498 REMARK 3 T13: 0.0010 T23: 0.0801 REMARK 3 L TENSOR REMARK 3 L11: 1.4910 L22: 7.1491 REMARK 3 L33: 7.7482 L12: 2.0135 REMARK 3 L13: 2.6254 L23: 1.2866 REMARK 3 S TENSOR REMARK 3 S11: -0.6190 S12: -0.2002 S13: -0.3188 REMARK 3 S21: 0.8483 S22: -0.4334 S23: 1.9046 REMARK 3 S31: 0.1698 S32: -1.5442 S33: 1.0533 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0660 -18.2625 -26.0241 REMARK 3 T TENSOR REMARK 3 T11: 0.3240 T22: 0.5266 REMARK 3 T33: 0.3670 T12: -0.1233 REMARK 3 T13: 0.0672 T23: -0.1021 REMARK 3 L TENSOR REMARK 3 L11: 8.4961 L22: 9.5610 REMARK 3 L33: 9.3216 L12: 5.8594 REMARK 3 L13: -1.3678 L23: -3.4960 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: 0.9501 S13: -1.0221 REMARK 3 S21: 0.2782 S22: -0.0005 S23: -0.1620 REMARK 3 S31: 0.4983 S32: -0.6809 S33: 0.0306 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6029 -12.6564 -21.4486 REMARK 3 T TENSOR REMARK 3 T11: 0.2561 T22: 0.3342 REMARK 3 T33: 0.3814 T12: 0.0135 REMARK 3 T13: 0.0639 T23: 0.0654 REMARK 3 L TENSOR REMARK 3 L11: 3.5035 L22: 2.5321 REMARK 3 L33: 2.0232 L12: 0.4512 REMARK 3 L13: 5.9654 L23: 1.5619 REMARK 3 S TENSOR REMARK 3 S11: 0.2936 S12: -0.1835 S13: -0.4345 REMARK 3 S21: 0.2840 S22: 0.0215 S23: -0.1391 REMARK 3 S31: 0.5725 S32: -0.0563 S33: -0.3020 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.6468 -7.4786 -14.5738 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.3928 REMARK 3 T33: 0.3529 T12: -0.0150 REMARK 3 T13: -0.0555 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 3.7948 L22: 3.0273 REMARK 3 L33: 1.7012 L12: 0.6686 REMARK 3 L13: 1.1865 L23: -0.5355 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: -0.0516 S13: 0.1395 REMARK 3 S21: 0.3124 S22: -0.1620 S23: -0.5068 REMARK 3 S31: 0.0101 S32: 0.6497 S33: 0.0944 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0619 -0.4450 -16.0538 REMARK 3 T TENSOR REMARK 3 T11: 0.3037 T22: 0.3616 REMARK 3 T33: 0.6539 T12: -0.0387 REMARK 3 T13: -0.0714 T23: -0.1399 REMARK 3 L TENSOR REMARK 3 L11: 5.4057 L22: 7.3433 REMARK 3 L33: 9.1073 L12: -5.1917 REMARK 3 L13: -0.6269 L23: 2.6976 REMARK 3 S TENSOR REMARK 3 S11: -0.1534 S12: -0.1517 S13: -0.1196 REMARK 3 S21: 0.9595 S22: 0.1554 S23: -1.5807 REMARK 3 S31: -0.1004 S32: 0.5892 S33: 0.0158 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5286 -1.7073 -15.6282 REMARK 3 T TENSOR REMARK 3 T11: 0.1987 T22: 0.4048 REMARK 3 T33: 0.3628 T12: 0.0063 REMARK 3 T13: -0.0216 T23: -0.1349 REMARK 3 L TENSOR REMARK 3 L11: 1.7902 L22: 4.2710 REMARK 3 L33: 5.2225 L12: 0.3811 REMARK 3 L13: -1.0640 L23: -0.2512 REMARK 3 S TENSOR REMARK 3 S11: -0.2540 S12: 0.4090 S13: -0.0524 REMARK 3 S21: 0.3163 S22: 0.0031 S23: 0.0627 REMARK 3 S31: 0.1923 S32: -0.3942 S33: 0.2877 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3229 -1.9258 -25.1744 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: 0.3200 REMARK 3 T33: 0.3888 T12: 0.0576 REMARK 3 T13: -0.0976 T23: 0.0874 REMARK 3 L TENSOR REMARK 3 L11: 9.4662 L22: 6.4174 REMARK 3 L33: 3.7277 L12: 4.9954 REMARK 3 L13: -2.4631 L23: 2.0615 REMARK 3 S TENSOR REMARK 3 S11: -0.4850 S12: -0.0994 S13: 0.7038 REMARK 3 S21: -0.9432 S22: 0.5410 S23: 0.2971 REMARK 3 S31: -0.4707 S32: -0.0575 S33: 0.0289 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9197 -16.4179 -17.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.4754 T22: 0.4096 REMARK 3 T33: 0.3301 T12: -0.1761 REMARK 3 T13: 0.0920 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 8.8149 L22: 9.2928 REMARK 3 L33: 5.1343 L12: -0.8325 REMARK 3 L13: 2.1042 L23: 0.7477 REMARK 3 S TENSOR REMARK 3 S11: -0.1321 S12: -0.3104 S13: -0.7405 REMARK 3 S21: 0.3297 S22: 0.0232 S23: 0.4871 REMARK 3 S31: 0.9416 S32: -0.8731 S33: 0.1037 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -5 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0995 17.3866 -43.0119 REMARK 3 T TENSOR REMARK 3 T11: 0.4234 T22: 0.2944 REMARK 3 T33: 0.4527 T12: 0.1670 REMARK 3 T13: -0.0321 T23: -0.0781 REMARK 3 L TENSOR REMARK 3 L11: 2.0498 L22: 5.7271 REMARK 3 L33: 2.4105 L12: -2.8158 REMARK 3 L13: -0.9221 L23: 0.0805 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: -0.0868 S13: 0.3529 REMARK 3 S21: -0.2175 S22: -0.1933 S23: 0.0852 REMARK 3 S31: -0.2520 S32: -0.6196 S33: 0.1107 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3774 10.5858 -46.6538 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.1877 REMARK 3 T33: 0.4780 T12: 0.0548 REMARK 3 T13: -0.0183 T23: -0.1064 REMARK 3 L TENSOR REMARK 3 L11: 3.4011 L22: 0.2925 REMARK 3 L33: 4.3279 L12: -0.8170 REMARK 3 L13: -0.1020 L23: -0.6637 REMARK 3 S TENSOR REMARK 3 S11: 0.2139 S12: -0.0054 S13: 0.2426 REMARK 3 S21: 0.1313 S22: 0.2714 S23: -0.2765 REMARK 3 S31: -0.3900 S32: 0.1532 S33: -0.5061 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0868 2.0108 -51.1081 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: 0.1944 REMARK 3 T33: 0.3033 T12: 0.0250 REMARK 3 T13: -0.0617 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 5.1569 L22: 5.4298 REMARK 3 L33: 6.7360 L12: -1.1505 REMARK 3 L13: 0.1412 L23: 0.5027 REMARK 3 S TENSOR REMARK 3 S11: 0.0659 S12: 0.3720 S13: -0.2713 REMARK 3 S21: -0.2531 S22: 0.1227 S23: -0.0951 REMARK 3 S31: 0.0603 S32: -0.3806 S33: -0.2053 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2850 0.9605 -40.9634 REMARK 3 T TENSOR REMARK 3 T11: 0.2022 T22: 0.2601 REMARK 3 T33: 0.3557 T12: 0.0028 REMARK 3 T13: -0.0798 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 7.6120 L22: 4.5316 REMARK 3 L33: 5.7462 L12: -2.7203 REMARK 3 L13: -1.3382 L23: 2.8040 REMARK 3 S TENSOR REMARK 3 S11: -0.1163 S12: -0.5801 S13: -0.0281 REMARK 3 S21: -0.2582 S22: -0.0658 S23: 0.0245 REMARK 3 S31: 0.0008 S32: -0.5496 S33: 0.0898 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9241 16.4194 -47.0747 REMARK 3 T TENSOR REMARK 3 T11: 0.2781 T22: 0.3280 REMARK 3 T33: 0.3500 T12: 0.1418 REMARK 3 T13: -0.0451 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 5.6281 L22: 9.0634 REMARK 3 L33: 6.9903 L12: -0.0032 REMARK 3 L13: -1.6142 L23: -0.1701 REMARK 3 S TENSOR REMARK 3 S11: 0.2466 S12: 0.2173 S13: 0.6156 REMARK 3 S21: -0.4984 S22: -0.0808 S23: -0.1271 REMARK 3 S31: -0.3071 S32: -0.5787 S33: -0.2287 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33926 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.988 REMARK 200 RESOLUTION RANGE LOW (A) : 74.272 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.50 REMARK 200 R MERGE (I) : 0.34400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 26.70 REMARK 200 R MERGE FOR SHELL (I) : 2.16900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GD9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.10 M HEPES PH 7.5, 0.15 M NACL, 2.20 REMARK 280 M AMMONIUM SULFATE, 0.02 M SULFONATO-CALIX[8]ARENE, 0.05 M REMARK 280 SPERMINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.31100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.51800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.51800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.96650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.51800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.51800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.65550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.51800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.51800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.96650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.51800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.51800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.65550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.31100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 410 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 411 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O25 EVB B 202 O HOH B 301 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -141.77 -115.76 REMARK 500 ASN A 70 86.62 -165.64 REMARK 500 MET A 80 146.15 179.74 REMARK 500 ALA A 81 54.59 -95.10 REMARK 500 LYS B 27 -141.23 -115.71 REMARK 500 ASN B 70 86.70 -166.34 REMARK 500 MET B 80 147.19 179.98 REMARK 500 ALA B 81 55.77 -94.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 87.1 REMARK 620 3 HEC A 201 NB 80.8 89.5 REMARK 620 4 HEC A 201 NC 85.1 172.2 90.2 REMARK 620 5 HEC A 201 ND 92.4 91.3 173.1 88.1 REMARK 620 6 HOH A 386 O 172.5 93.4 91.8 94.4 95.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 201 NA 87.5 REMARK 620 3 HEC B 201 NB 82.3 88.9 REMARK 620 4 HEC B 201 NC 84.5 171.9 90.4 REMARK 620 5 HEC B 201 ND 91.2 91.4 173.4 88.4 REMARK 620 6 HOH B 384 O 174.6 93.0 92.4 95.0 94.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC B 201 and CYS B REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC B 201 and CYS B REMARK 800 14 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GD9 RELATED DB: PDB REMARK 900 6GD9 CONTAINS THE SAME PROTEIN COMPLEXED WITH SULFONATO-CALIX[8] REMARK 900 ARENE. REMARK 900 RELATED ID: 6GDA RELATED DB: PDB REMARK 900 6GDA CONTAINS THE SAME PROTEIN COMPLEXED WITH SULFONATO-CALIX[8] REMARK 900 ARENE AND SPERMINE. DBREF 6RSL A -4 103 UNP P00044 CYC1_YEAST 3 109 DBREF 6RSL B -4 103 UNP P00044 CYC1_YEAST 3 109 SEQADV 6RSL ALA A -5 UNP P00044 EXPRESSION TAG SEQADV 6RSL THR A 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQADV 6RSL ALA B -5 UNP P00044 EXPRESSION TAG SEQADV 6RSL THR B 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQRES 1 A 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU SEQRES 1 B 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 B 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 B 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 B 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 B 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 B 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 B 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 B 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 B 108 LYS ALA THR GLU HET HEC A 201 43 HET EVB A 202 96 HET EVB A 203 96 HET EVB A 204 96 HET SPM A 205 14 HET SPM A 206 14 HET SPM A 207 14 HET SPM A 208 14 HET SO4 A 209 5 HET SO4 A 210 5 HET HEC B 201 43 HET EVB B 202 96 HET EVB B 203 96 HET EVB B 204 96 HET SPM B 205 14 HET SPM B 206 14 HET SPM B 207 14 HET SPM B 208 14 HET SO4 B 209 5 HET SO4 B 210 5 HETNAM HEC HEME C HETNAM EVB SULFONATO-CALIX[8]ARENE HETNAM SPM SPERMINE HETNAM SO4 SULFATE ION FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 EVB 6(C56 H48 O32 S8) FORMUL 7 SPM 8(C10 H26 N4) FORMUL 11 SO4 4(O4 S 2-) FORMUL 23 HOH *221(H2 O) HELIX 1 AA1 SER A 2 CYS A 14 1 13 HELIX 2 AA2 THR A 49 ASN A 56 1 8 HELIX 3 AA3 ASP A 60 ASN A 70 1 11 HELIX 4 AA4 ASN A 70 ILE A 75 1 6 HELIX 5 AA5 LYS A 87 THR A 102 1 16 HELIX 6 AA6 SER B 2 CYS B 14 1 13 HELIX 7 AA7 THR B 49 ASN B 56 1 8 HELIX 8 AA8 ASP B 60 ASN B 70 1 11 HELIX 9 AA9 ASN B 70 ILE B 75 1 6 HELIX 10 AB1 LYS B 87 THR B 102 1 16 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.76 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.79 LINK SG CYS B 14 CAB HEC B 201 1555 1555 1.77 LINK SG CYS B 17 CAC HEC B 201 1555 1555 1.79 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.15 LINK FE HEC A 201 O HOH A 386 1555 1555 2.35 LINK NE2 HIS B 18 FE HEC B 201 1555 1555 2.15 LINK FE HEC B 201 O HOH B 384 1555 1555 2.32 SITE 1 AC1 23 ARG A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 23 VAL A 28 ILE A 35 SER A 40 GLY A 41 SITE 3 AC1 23 TYR A 46 TYR A 48 THR A 49 ASN A 52 SITE 4 AC1 23 TRP A 59 TYR A 67 LEU A 68 THR A 78 SITE 5 AC1 23 LYS A 79 MET A 80 ALA A 81 PHE A 82 SITE 6 AC1 23 HOH A 331 HOH A 337 HOH A 386 SITE 1 AC2 26 LYS A 11 THR A 12 LEU A 15 GLN A 16 SITE 2 AC2 26 THR A 19 GLY A 24 PRO A 25 LYS A 27 SITE 3 AC2 26 GLY A 41 GLN A 42 TYR A 46 TYR A 48 SITE 4 AC2 26 ASP A 50 ILE A 53 LYS A 54 ASN A 56 SITE 5 AC2 26 HOH A 303 HOH A 307 HOH A 311 HOH A 322 SITE 6 AC2 26 HOH A 349 HOH A 351 HOH A 363 HOH A 371 SITE 7 AC2 26 HOH A 378 LYS B 79 SITE 1 AC3 17 ALA A -1 GLY A 1 ALA A 3 LYS A 4 SITE 2 AC3 17 LYS A 5 ALA A 7 THR A 8 TYR A 97 SITE 3 AC3 17 LYS A 100 SPM A 207 SPM A 208 SO4 A 209 SITE 4 AC3 17 HOH A 304 HOH A 314 HOH A 317 HOH A 319 SITE 5 AC3 17 HOH A 336 SITE 1 AC4 20 ARG A 13 PHE A 82 GLY A 83 GLY A 84 SITE 2 AC4 20 LEU A 85 LYS A 86 LYS A 87 SPM A 205 SITE 3 AC4 20 HOH A 305 HOH A 308 HOH A 310 HOH A 313 SITE 4 AC4 20 HOH A 316 HOH A 368 ASN B 70 LYS B 72 SITE 5 AC4 20 LYS B 73 GLY B 77 EVB B 204 SPM B 206 SITE 1 AC5 6 THR A 12 ARG A 13 EVB A 204 HOH A 308 SITE 2 AC5 6 HOH A 312 HOH A 327 SITE 1 AC6 1 EVB B 204 SITE 1 AC7 2 EVB A 203 SO4 A 209 SITE 1 AC8 2 EVB A 203 SO4 A 210 SITE 1 AC9 2 EVB A 203 SPM A 207 SITE 1 AD1 1 SPM A 208 SITE 1 AD2 27 LYS A 79 LYS B 11 THR B 12 LEU B 15 SITE 2 AD2 27 GLN B 16 THR B 19 GLY B 24 PRO B 25 SITE 3 AD2 27 LYS B 27 GLY B 41 GLN B 42 TYR B 46 SITE 4 AD2 27 TYR B 48 ASP B 50 ILE B 53 LYS B 54 SITE 5 AD2 27 ASN B 56 HOH B 301 HOH B 303 HOH B 306 SITE 6 AD2 27 HOH B 321 HOH B 323 HOH B 347 HOH B 352 SITE 7 AD2 27 HOH B 364 HOH B 371 HOH B 377 SITE 1 AD3 17 ALA B -1 GLY B 1 ALA B 3 LYS B 4 SITE 2 AD3 17 LYS B 5 ALA B 7 THR B 8 THR B 96 SITE 3 AD3 17 TYR B 97 LYS B 100 SPM B 207 SPM B 208 SITE 4 AD3 17 HOH B 308 HOH B 317 HOH B 318 HOH B 324 SITE 5 AD3 17 HOH B 339 SITE 1 AD4 20 ASN A 70 LYS A 72 LYS A 73 GLY A 77 SITE 2 AD4 20 EVB A 204 SPM A 206 ARG B 13 PHE B 82 SITE 3 AD4 20 GLY B 83 GLY B 84 LEU B 85 LYS B 86 SITE 4 AD4 20 LYS B 87 SPM B 205 HOH B 304 HOH B 307 SITE 5 AD4 20 HOH B 309 HOH B 312 HOH B 320 HOH B 369 SITE 1 AD5 4 THR B 12 ARG B 13 EVB B 204 HOH B 320 SITE 1 AD6 1 EVB A 204 SITE 1 AD7 2 EVB B 203 SO4 B 210 SITE 1 AD8 2 EVB B 203 SO4 B 209 SITE 1 AD9 1 SPM B 208 SITE 1 AE1 1 SPM B 207 SITE 1 AE2 25 ARG B 13 CYS B 14 LEU B 15 GLN B 16 SITE 2 AE2 25 HIS B 18 LYS B 27 VAL B 28 GLY B 29 SITE 3 AE2 25 ILE B 35 SER B 40 GLY B 41 TYR B 46 SITE 4 AE2 25 TYR B 48 THR B 49 ASN B 52 TRP B 59 SITE 5 AE2 25 TYR B 67 LEU B 68 THR B 78 LYS B 79 SITE 6 AE2 25 ALA B 81 PHE B 82 HOH B 334 HOH B 340 SITE 7 AE2 25 HOH B 384 SITE 1 AE3 24 PHE B 10 ARG B 13 LEU B 15 GLN B 16 SITE 2 AE3 24 CYS B 17 HIS B 18 VAL B 28 ILE B 35 SITE 3 AE3 24 SER B 40 GLY B 41 TYR B 46 TYR B 48 SITE 4 AE3 24 THR B 49 ASN B 52 TRP B 59 TYR B 67 SITE 5 AE3 24 LEU B 68 THR B 78 LYS B 79 ALA B 81 SITE 6 AE3 24 PHE B 82 HOH B 334 HOH B 340 HOH B 384 CRYST1 105.036 105.036 86.622 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009521 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011544 0.00000