data_6RSP # _entry.id 6RSP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6RSP pdb_00006rsp 10.2210/pdb6rsp/pdb WWPDB D_1292102521 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-08 2 'Structure model' 1 1 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.value' 6 2 'Structure model' '_struct_conn.pdbx_dist_value' 7 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6RSP _pdbx_database_status.recvd_initial_deposition_date 2019-05-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McQuaid, K.T.' 1 0000-0002-3222-5584 'Hall, J.P.' 2 0000-0003-3716-4378 'Cardin, C.J.' 3 0000-0002-2556-9995 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'L-[Ru(phen)2(11-NO2-dppz)]2+ bound to the Oligonucleotide sequence d(TCGGCGCCGA)' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McQuaid, K.T.' 1 0000-0002-3222-5584 primary 'Hall, J.P.' 2 0000-0003-3716-4378 primary 'Cardin, C.J.' 3 0000-0002-2556-9995 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3') ; 3045.992 2 ? ? ? ? 2 non-polymer syn 'BARIUM ION' 137.327 2 ? ? ? ? 3 non-polymer syn 'Ruthenium (bis-(phenanthroline)) (11-nitro-dipyridophenazine)' 788.777 2 ? ? ? ? 4 water nat water 18.015 41 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCGGCGCCGA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BARIUM ION' BA 3 'Ruthenium (bis-(phenanthroline)) (11-nitro-dipyridophenazine)' KHK 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 KHK non-polymer . 'Ruthenium (bis-(phenanthroline)) (11-nitro-dipyridophenazine)' ? 'C42 H25 N9 O2 Ru' 788.777 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n B 1 1 DT 1 1 1 DT DT B . n B 1 2 DC 2 2 2 DC DC B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 DG 6 6 6 DG DG B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DC 8 8 8 DC DC B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DA 10 10 10 DA DA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BA 1 101 102 BA BA A . D 3 KHK 1 102 2 KHK 11N A . E 2 BA 1 101 103 BA BA B . F 3 KHK 1 102 1 KHK 11N B . G 4 HOH 1 201 24 HOH HOH A . G 4 HOH 2 202 28 HOH HOH A . G 4 HOH 3 203 14 HOH HOH A . G 4 HOH 4 204 37 HOH HOH A . G 4 HOH 5 205 26 HOH HOH A . G 4 HOH 6 206 10 HOH HOH A . G 4 HOH 7 207 15 HOH HOH A . G 4 HOH 8 208 6 HOH HOH A . G 4 HOH 9 209 23 HOH HOH A . G 4 HOH 10 210 3 HOH HOH A . G 4 HOH 11 211 8 HOH HOH A . G 4 HOH 12 212 18 HOH HOH A . G 4 HOH 13 213 38 HOH HOH A . G 4 HOH 14 214 44 HOH HOH A . G 4 HOH 15 215 36 HOH HOH A . G 4 HOH 16 216 31 HOH HOH A . G 4 HOH 17 217 21 HOH HOH A . G 4 HOH 18 218 30 HOH HOH A . G 4 HOH 19 219 17 HOH HOH A . G 4 HOH 20 220 27 HOH HOH A . H 4 HOH 1 201 25 HOH HOH B . H 4 HOH 2 202 35 HOH HOH B . H 4 HOH 3 203 33 HOH HOH B . H 4 HOH 4 204 13 HOH HOH B . H 4 HOH 5 205 29 HOH HOH B . H 4 HOH 6 206 34 HOH HOH B . H 4 HOH 7 207 7 HOH HOH B . H 4 HOH 8 208 16 HOH HOH B . H 4 HOH 9 209 5 HOH HOH B . H 4 HOH 10 210 9 HOH HOH B . H 4 HOH 11 211 20 HOH HOH B . H 4 HOH 12 212 4 HOH HOH B . H 4 HOH 13 213 40 HOH HOH B . H 4 HOH 14 214 22 HOH HOH B . H 4 HOH 15 215 32 HOH HOH B . H 4 HOH 16 216 19 HOH HOH B . H 4 HOH 17 217 45 HOH HOH B . H 4 HOH 18 218 42 HOH HOH B . H 4 HOH 19 219 39 HOH HOH B . H 4 HOH 20 220 46 HOH HOH B . H 4 HOH 21 221 41 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.15rc2_3433: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6RSP _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.108 _cell.length_a_esd ? _cell.length_b 47.108 _cell.length_b_esd ? _cell.length_c 32.460 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RSP _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6RSP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40 _exptl_crystal.description 'Red Rhombohedra' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;8 uL drop containing; 250 uM d(TCGGCGCCGA), 500 uM rac-[Ru(phen)2(11-NO2-dppz)]Cl2, 7.5% v/v MPD, 30 mM pH 7 sodium cacodylate, 9 mM spermine tetrahydrochloride, 60 mM KCl and 15 mM BaCl2, all equilibrated against 500 uL of 35% v/v MPD ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-02-18 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9763 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6RSP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.91 _reflns.d_resolution_low 33.31 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5650 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.9 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.059 _reflns.pdbx_Rpim_I_all 0.016 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.91 _reflns_shell.d_res_low 1.94 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3398 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6RSP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.910 _refine.ls_d_res_low 33.310 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10800 _refine.ls_number_reflns_R_free 504 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.94 _refine.ls_percent_reflns_R_free 4.67 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1876 _refine.ls_R_factor_R_free 0.2105 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1864 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.66 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.25 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.910 _refine_hist.d_res_low 33.310 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 555 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 110 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 ? 720 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.225 ? 1150 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 26.880 ? 216 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.054 ? 78 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.012 ? 36 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9100 2.1022 . . 105 2555 100.00 . . . 0.3290 . 0.2624 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1022 2.4063 . . 105 2615 100.00 . . . 0.2588 . 0.1990 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4063 3.0314 . . 152 2556 100.00 . . . 0.2057 . 0.2206 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0314 33.3152 . . 142 2570 100.00 . . . 0.2016 . 0.1691 . . . . . . . . . . # _struct.entry_id 6RSP _struct.title 'L-[Ru(phen)2(11-NO2-dppz)]2+ bound to the Oligonucleotide sequence d(TCGGCGCCGA)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6RSP _struct_keywords.text 'Ruthenium, intercalation, DNA, asymmetric' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6RSP _struct_ref.pdbx_db_accession 6RSP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6RSP A 1 ? 10 ? 6RSP 1 ? 10 ? 1 10 2 1 6RSP B 1 ? 10 ? 6RSP 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2090 ? 1 MORE -24 ? 1 'SSA (A^2)' 4490 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 C BA . BA ? ? A DG 4 A BA 101 1_555 ? ? ? ? ? ? ? 2.743 ? ? metalc2 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? A BA 101 A HOH 201 1_555 ? ? ? ? ? ? ? 2.604 ? ? metalc3 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? A BA 101 A HOH 208 1_555 ? ? ? ? ? ? ? 2.632 ? ? metalc4 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? A BA 101 A HOH 209 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc5 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? A BA 101 A HOH 220 1_555 ? ? ? ? ? ? ? 2.673 ? ? metalc6 metalc ? ? B DG 4 O6 ? ? ? 1_555 E BA . BA ? ? B DG 4 B BA 101 1_555 ? ? ? ? ? ? ? 2.775 ? ? metalc7 metalc ? ? E BA . BA ? ? ? 1_555 H HOH . O ? ? B BA 101 B HOH 203 1_555 ? ? ? ? ? ? ? 2.631 ? ? metalc8 metalc ? ? E BA . BA ? ? ? 1_555 H HOH . O ? ? B BA 101 B HOH 204 1_555 ? ? ? ? ? ? ? 2.584 ? ? metalc9 metalc ? ? E BA . BA ? ? ? 1_555 H HOH . O ? ? B BA 101 B HOH 209 1_555 ? ? ? ? ? ? ? 2.687 ? ? metalc10 metalc ? ? E BA . BA ? ? ? 1_555 H HOH . O ? ? B BA 101 B HOH 214 1_555 ? ? ? ? ? ? ? 2.800 ? ? metalc11 metalc ? ? E BA . BA ? ? ? 1_555 H HOH . O ? ? B BA 101 B HOH 221 1_555 ? ? ? ? ? ? ? 2.534 ? ? hydrog1 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 1 B DA 10 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog2 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 5 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 5 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 5 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 6 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 6 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 6 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 10 B DT 1 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 201 ? 1_555 150.1 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 208 ? 1_555 64.3 ? 3 O ? G HOH . ? A HOH 201 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 208 ? 1_555 132.3 ? 4 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 209 ? 1_555 91.6 ? 5 O ? G HOH . ? A HOH 201 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 209 ? 1_555 117.1 ? 6 O ? G HOH . ? A HOH 208 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 209 ? 1_555 67.9 ? 7 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 220 ? 1_555 121.6 ? 8 O ? G HOH . ? A HOH 201 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 220 ? 1_555 77.2 ? 9 O ? G HOH . ? A HOH 208 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 220 ? 1_555 57.8 ? 10 O ? G HOH . ? A HOH 209 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 220 ? 1_555 74.4 ? 11 O6 ? B DG 4 ? B DG 4 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 203 ? 1_555 148.7 ? 12 O6 ? B DG 4 ? B DG 4 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 204 ? 1_555 130.7 ? 13 O ? H HOH . ? B HOH 203 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 204 ? 1_555 60.8 ? 14 O6 ? B DG 4 ? B DG 4 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 209 ? 1_555 61.7 ? 15 O ? H HOH . ? B HOH 203 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 209 ? 1_555 131.5 ? 16 O ? H HOH . ? B HOH 204 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 209 ? 1_555 142.0 ? 17 O6 ? B DG 4 ? B DG 4 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 214 ? 1_555 96.2 ? 18 O ? H HOH . ? B HOH 203 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 214 ? 1_555 114.7 ? 19 O ? H HOH . ? B HOH 204 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 214 ? 1_555 71.4 ? 20 O ? H HOH . ? B HOH 209 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 214 ? 1_555 71.4 ? 21 O6 ? B DG 4 ? B DG 4 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 221 ? 1_555 129.8 ? 22 O ? H HOH . ? B HOH 203 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 221 ? 1_555 69.8 ? 23 O ? H HOH . ? B HOH 204 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 221 ? 1_555 91.6 ? 24 O ? H HOH . ? B HOH 209 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 221 ? 1_555 68.2 ? 25 O ? H HOH . ? B HOH 214 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 221 ? 1_555 69.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BA 101 ? 8 'binding site for residue BA A 101' AC2 Software A KHK 102 ? 10 'binding site for residue KHK A 102' AC3 Software B BA 101 ? 8 'binding site for residue BA B 101' AC4 Software B KHK 102 ? 9 'binding site for residue KHK B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 8 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 8 HOH G . ? HOH A 201 . ? 1_555 ? 4 AC1 8 HOH G . ? HOH A 203 . ? 1_555 ? 5 AC1 8 HOH G . ? HOH A 208 . ? 1_555 ? 6 AC1 8 HOH G . ? HOH A 209 . ? 1_555 ? 7 AC1 8 HOH G . ? HOH A 210 . ? 1_555 ? 8 AC1 8 HOH G . ? HOH A 220 . ? 1_555 ? 9 AC2 10 DC A 7 ? DC A 7 . ? 4_555 ? 10 AC2 10 DC A 8 ? DC A 8 . ? 4_555 ? 11 AC2 10 DG A 9 ? DG A 9 . ? 1_555 ? 12 AC2 10 DA A 10 ? DA A 10 . ? 1_555 ? 13 AC2 10 DT B 1 ? DT B 1 . ? 1_555 ? 14 AC2 10 DC B 2 ? DC B 2 . ? 1_555 ? 15 AC2 10 DG B 3 ? DG B 3 . ? 1_555 ? 16 AC2 10 DG B 3 ? DG B 3 . ? 4_555 ? 17 AC2 10 DG B 4 ? DG B 4 . ? 4_555 ? 18 AC2 10 DC B 5 ? DC B 5 . ? 4_555 ? 19 AC3 8 DG B 3 ? DG B 3 . ? 1_555 ? 20 AC3 8 DG B 4 ? DG B 4 . ? 1_555 ? 21 AC3 8 HOH H . ? HOH B 203 . ? 1_555 ? 22 AC3 8 HOH H . ? HOH B 204 . ? 1_555 ? 23 AC3 8 HOH H . ? HOH B 209 . ? 1_555 ? 24 AC3 8 HOH H . ? HOH B 212 . ? 1_555 ? 25 AC3 8 HOH H . ? HOH B 214 . ? 1_555 ? 26 AC3 8 HOH H . ? HOH B 221 . ? 1_555 ? 27 AC4 9 DT A 1 ? DT A 1 . ? 1_555 ? 28 AC4 9 DC A 2 ? DC A 2 . ? 1_555 ? 29 AC4 9 DG A 3 ? DG A 3 . ? 3_544 ? 30 AC4 9 DG A 3 ? DG A 3 . ? 1_555 ? 31 AC4 9 DG A 4 ? DG A 4 . ? 3_544 ? 32 AC4 9 DC B 7 ? DC B 7 . ? 3_544 ? 33 AC4 9 DC B 8 ? DC B 8 . ? 3_544 ? 34 AC4 9 DG B 9 ? DG B 9 . ? 1_555 ? 35 AC4 9 DA B 10 ? DA B 10 . ? 1_555 ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 11.6359 -10.7659 3.1375 0.3195 ? -0.0351 ? 0.0143 ? 0.4910 ? 0.0190 ? 0.4228 ? 5.8212 ? -4.6120 ? -5.3014 ? 6.3581 ? 2.4192 ? 6.7258 ? -0.0232 ? -0.6577 ? 0.0040 ? 0.2633 ? -0.0206 ? 0.0762 ? 0.1232 ? -0.0822 ? 0.0985 ? 2 'X-RAY DIFFRACTION' ? refined 12.7851 -11.9250 -4.1250 0.4660 ? -0.0130 ? -0.0341 ? 0.3239 ? -0.0138 ? 0.4144 ? 6.1661 ? -4.2725 ? -3.1812 ? 6.7086 ? 5.5777 ? 7.0348 ? -0.0997 ? 0.1949 ? -0.3128 ? -0.6549 ? -0.0288 ? 0.1202 ? -0.0123 ? -0.0078 ? 0.0366 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 10 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 10 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 KHK C13 C Y N 148 KHK C17 C Y N 149 KHK C22 C Y N 150 KHK C26 C Y N 151 KHK C11 C Y N 152 KHK C14 C Y N 153 KHK C41 C Y N 154 KHK C23 C Y N 155 KHK C25 C Y N 156 KHK C01 C Y N 157 KHK C02 C Y N 158 KHK C03 C Y N 159 KHK C04 C Y N 160 KHK C05 C Y N 161 KHK C06 C Y N 162 KHK C08 C Y N 163 KHK C09 C Y N 164 KHK C12 C Y N 165 KHK C16 C Y N 166 KHK C18 C Y N 167 KHK C21 C Y N 168 KHK C27 C Y N 169 KHK C28 C Y N 170 KHK C29 C Y N 171 KHK C30 C Y N 172 KHK C31 C Y N 173 KHK C32 C Y N 174 KHK C33 C Y N 175 KHK C34 C Y N 176 KHK C35 C Y N 177 KHK C36 C Y N 178 KHK C39 C Y N 179 KHK C40 C Y N 180 KHK C42 C Y N 181 KHK C43 C Y N 182 KHK C44 C Y N 183 KHK C45 C Y N 184 KHK C46 C Y N 185 KHK C47 C Y N 186 KHK C49 C Y N 187 KHK C50 C Y N 188 KHK C51 C Y N 189 KHK N07 N Y N 190 KHK N10 N Y N 191 KHK N15 N Y N 192 KHK N20 N Y N 193 KHK N24 N Y N 194 KHK N37 N Y N 195 KHK N38 N Y N 196 KHK N48 N Y N 197 KHK N74 N N N 198 KHK O75 O N N 199 KHK O76 O N N 200 KHK RU19 RU N N 201 KHK H55 H N N 202 KHK H79 H N N 203 KHK H59 H N N 204 KHK H56 H N N 205 KHK H68 H N N 206 KHK H57 H N N 207 KHK H58 H N N 208 KHK H52 H N N 209 KHK H53 H N N 210 KHK H77 H N N 211 KHK H54 H N N 212 KHK H78 H N N 213 KHK H60 H N N 214 KHK H61 H N N 215 KHK H62 H N N 216 KHK H63 H N N 217 KHK H64 H N N 218 KHK H65 H N N 219 KHK H66 H N N 220 KHK H67 H N N 221 KHK H69 H N N 222 KHK H70 H N N 223 KHK H71 H N N 224 KHK H72 H N N 225 KHK H73 H N N 226 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 KHK O76 N74 doub N N 152 KHK O75 N74 doub N N 153 KHK N74 C01 sing N N 154 KHK C01 C02 doub Y N 155 KHK C01 C04 sing Y N 156 KHK C02 C03 sing Y N 157 KHK C04 C05 doub Y N 158 KHK C03 C06 doub Y N 159 KHK C05 C06 sing Y N 160 KHK C05 N07 sing Y N 161 KHK C06 N10 sing Y N 162 KHK N07 C08 doub Y N 163 KHK C41 C40 doub Y N 164 KHK C41 C42 sing Y N 165 KHK C40 C39 sing Y N 166 KHK N10 C09 doub Y N 167 KHK C08 C09 sing Y N 168 KHK C08 C11 sing Y N 169 KHK C09 C18 sing Y N 170 KHK C42 C44 doub Y N 171 KHK C42 C43 sing Y N 172 KHK C39 N38 doub Y N 173 KHK C44 C45 sing Y N 174 KHK C12 C11 doub Y N 175 KHK C12 C13 sing Y N 176 KHK C11 C16 sing Y N 177 KHK C18 C23 doub Y N 178 KHK C18 C17 sing Y N 179 KHK C13 C14 doub Y N 180 KHK C23 C22 sing Y N 181 KHK C43 N38 sing Y N 182 KHK C43 C47 doub Y N 183 KHK C45 C46 doub Y N 184 KHK N38 RU19 sing N N 185 KHK C16 C17 sing Y N 186 KHK C16 N15 doub Y N 187 KHK C17 N20 doub Y N 188 KHK C14 N15 sing Y N 189 KHK N15 RU19 sing N N 190 KHK C22 C21 doub Y N 191 KHK C47 C46 sing Y N 192 KHK C47 N48 sing Y N 193 KHK N20 C21 sing Y N 194 KHK N20 RU19 sing N N 195 KHK C46 C49 sing Y N 196 KHK RU19 N48 sing N N 197 KHK RU19 N24 sing N N 198 KHK RU19 N37 sing N N 199 KHK C25 N24 doub Y N 200 KHK C25 C26 sing Y N 201 KHK N48 C51 doub Y N 202 KHK C49 C50 doub Y N 203 KHK N24 C28 sing Y N 204 KHK C26 C27 doub Y N 205 KHK C51 C50 sing Y N 206 KHK N37 C35 doub Y N 207 KHK N37 C36 sing Y N 208 KHK C35 C34 sing Y N 209 KHK C28 C36 doub Y N 210 KHK C28 C29 sing Y N 211 KHK C27 C29 sing Y N 212 KHK C36 C32 sing Y N 213 KHK C29 C30 doub Y N 214 KHK C34 C33 doub Y N 215 KHK C32 C33 sing Y N 216 KHK C32 C31 doub Y N 217 KHK C30 C31 sing Y N 218 KHK C13 H55 sing N N 219 KHK C22 H79 sing N N 220 KHK C26 H59 sing N N 221 KHK C14 H56 sing N N 222 KHK C41 H68 sing N N 223 KHK C23 H57 sing N N 224 KHK C25 H58 sing N N 225 KHK C02 H52 sing N N 226 KHK C03 H53 sing N N 227 KHK C04 H77 sing N N 228 KHK C12 H54 sing N N 229 KHK C21 H78 sing N N 230 KHK C27 H60 sing N N 231 KHK C30 H61 sing N N 232 KHK C31 H62 sing N N 233 KHK C33 H63 sing N N 234 KHK C34 H64 sing N N 235 KHK C35 H65 sing N N 236 KHK C39 H66 sing N N 237 KHK C40 H67 sing N N 238 KHK C44 H69 sing N N 239 KHK C45 H70 sing N N 240 KHK C49 H71 sing N N 241 KHK C50 H72 sing N N 242 KHK C51 H73 sing N N 243 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6RSP 'double helix' 6RSP 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 10 1_555 1.091 1.888 -1.133 0.397 -24.870 -84.508 1 A_DT1:DA10_B A 1 ? B 10 ? ? ? 1 A DC 2 1_555 B DG 9 1_555 0.227 -0.198 0.199 -14.242 8.142 0.098 2 A_DC2:DG9_B A 2 ? B 9 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.301 -0.084 0.401 25.008 -2.407 -3.195 3 A_DG3:DC8_B A 3 ? B 8 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.109 -0.144 -0.217 -12.934 1.113 -0.791 4 A_DG4:DC7_B A 4 ? B 7 ? 19 1 1 A DC 5 1_555 B DG 6 1_555 0.470 -0.041 -0.031 8.094 -4.183 -0.333 5 A_DC5:DG6_B A 5 ? B 6 ? 19 1 1 A DG 6 1_555 B DC 5 1_555 -0.360 -0.010 -0.104 -9.103 -2.669 0.582 6 A_DG6:DC5_B A 6 ? B 5 ? 19 1 1 A DC 7 1_555 B DG 4 1_555 0.182 -0.143 -0.148 11.349 2.248 -0.461 7 A_DC7:DG4_B A 7 ? B 4 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.254 -0.077 0.511 -25.741 -2.064 -2.403 8 A_DC8:DG3_B A 8 ? B 3 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.175 -0.153 0.081 12.925 6.821 1.356 9 A_DG9:DC2_B A 9 ? B 2 ? 19 1 1 A DA 10 1_555 B DT 1 1_555 -1.080 -1.864 1.151 -0.158 22.102 87.187 10 A_DA10:DT1_B A 10 ? B 1 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.022 1.488 2.549 0.595 2.631 20.845 3.183 0.264 2.712 7.232 -1.636 21.017 1 AA_DC2DG3:DC8DG9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 0.055 0.666 5.363 0.004 52.966 16.592 -5.267 -0.058 2.300 73.849 -0.005 55.324 2 AA_DG3DG4:DC7DC8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DC 5 1_555 B DG 6 1_555 -0.697 0.561 2.878 -1.120 -0.185 38.623 0.868 0.932 2.894 -0.280 1.693 38.639 3 AA_DG4DC5:DG6DC7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DC 5 1_555 B DG 6 1_555 A DG 6 1_555 B DC 5 1_555 0.006 1.610 4.506 0.939 36.099 15.264 -5.222 0.189 3.265 67.811 -1.763 39.105 4 AA_DC5DG6:DC5DG6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DG 6 1_555 B DC 5 1_555 A DC 7 1_555 B DG 4 1_555 0.728 0.541 2.901 -0.126 0.898 38.102 0.727 -1.130 2.911 1.375 0.193 38.112 5 AA_DG6DC7:DG4DC5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DC 7 1_555 B DG 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.046 0.638 5.331 -0.293 52.168 16.227 -5.326 0.017 2.252 73.917 0.415 54.465 6 AA_DC7DC8:DG3DG4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.033 1.534 2.568 0.666 3.143 21.299 3.072 0.307 2.760 8.441 -1.788 21.538 7 AA_DC8DG9:DC2DG3_BB A 8 ? B 3 ? A 9 ? B 2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/K019279/1 1 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/M004635/1 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id KHK _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id KHK _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 6RSP _atom_sites.fract_transf_matrix[1][1] 0.021228 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021228 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030807 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C H N O P RU # loop_ # loop_ #