HEADER HYDROLASE 22-MAY-19 6RTA TITLE TETRAGONAL LYSOZYME GROWN WITH 300G/L FICOLL COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.B.PEREIRA,C.FERREIRA,P.M.MARTINS REVDAT 5 24-JAN-24 6RTA 1 REMARK REVDAT 4 05-AUG-20 6RTA 1 JRNL REVDAT 3 22-JUL-20 6RTA 1 JRNL REVDAT 2 15-JUL-20 6RTA 1 JRNL REVDAT 1 26-JUN-19 6RTA 0 JRNL AUTH C.FERREIRA,M.F.PINTO,S.MACEDO-RIBEIRO,P.J.B.PEREIRA, JRNL AUTH 2 F.A.ROCHA,P.M.MARTINS JRNL TITL PROTEIN CRYSTALS AS A KEY FOR DECIPHERING MACROMOLECULAR JRNL TITL 2 CROWDING EFFECTS ON BIOLOGICAL REACTIONS. JRNL REF PHYS CHEM CHEM PHYS V. 22 16143 2020 JRNL REFN ESSN 1463-9084 JRNL PMID 32638771 JRNL DOI 10.1039/D0CP02469D REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 11064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.6076 - 2.8524 0.99 2756 156 0.1383 0.1568 REMARK 3 2 2.8524 - 2.2668 1.00 2674 133 0.1655 0.2361 REMARK 3 3 2.2668 - 1.9810 0.98 2594 120 0.1842 0.1835 REMARK 3 4 1.9810 - 1.8003 0.96 2519 112 0.2386 0.2800 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1067 REMARK 3 ANGLE : 0.792 1450 REMARK 3 CHIRALITY : 0.051 150 REMARK 3 PLANARITY : 0.004 193 REMARK 3 DIHEDRAL : 14.203 644 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9322 23.1302 17.9364 REMARK 3 T TENSOR REMARK 3 T11: 0.1325 T22: 0.1210 REMARK 3 T33: 0.1619 T12: 0.0126 REMARK 3 T13: 0.0426 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 3.4949 L22: 1.1493 REMARK 3 L33: 3.2774 L12: 0.6091 REMARK 3 L13: 0.8314 L23: 0.5614 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: -0.1295 S13: 0.1348 REMARK 3 S21: 0.1212 S22: -0.0038 S23: 0.0613 REMARK 3 S31: -0.2361 S32: -0.1170 S33: 0.0149 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5752 15.7226 7.3521 REMARK 3 T TENSOR REMARK 3 T11: 0.0773 T22: 0.2073 REMARK 3 T33: 0.1763 T12: 0.0060 REMARK 3 T13: -0.0172 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 4.7973 L22: 8.8360 REMARK 3 L33: 0.6712 L12: 0.9592 REMARK 3 L13: 0.9617 L23: -0.6958 REMARK 3 S TENSOR REMARK 3 S11: -0.2396 S12: -0.3604 S13: 0.0059 REMARK 3 S21: 0.0089 S22: 0.2274 S23: 0.4901 REMARK 3 S31: -0.1199 S32: -0.2375 S33: 0.0272 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6818 17.4185 14.9434 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.0894 REMARK 3 T33: 0.1038 T12: 0.0112 REMARK 3 T13: 0.0218 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.8975 L22: 2.6381 REMARK 3 L33: 0.7465 L12: 1.2961 REMARK 3 L13: 0.0608 L23: 0.2706 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: -0.1071 S13: 0.0120 REMARK 3 S21: -0.0075 S22: -0.0207 S23: -0.0820 REMARK 3 S31: 0.0352 S32: 0.0257 S33: 0.0071 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.0027 19.6690 4.3027 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.1241 REMARK 3 T33: 0.1750 T12: 0.0299 REMARK 3 T13: 0.0666 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 4.3747 L22: 1.2171 REMARK 3 L33: 6.3343 L12: 0.2363 REMARK 3 L13: 0.3537 L23: 2.5738 REMARK 3 S TENSOR REMARK 3 S11: 0.1336 S12: -0.0409 S13: 0.1265 REMARK 3 S21: -0.2261 S22: 0.1241 S23: -0.6615 REMARK 3 S31: 0.6471 S32: 0.1125 S33: -0.1462 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4173 22.6893 2.0666 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1164 REMARK 3 T33: 0.0983 T12: -0.0364 REMARK 3 T13: 0.0132 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.5618 L22: 1.5981 REMARK 3 L33: 0.8871 L12: 0.9354 REMARK 3 L13: 1.0336 L23: -0.5105 REMARK 3 S TENSOR REMARK 3 S11: -0.2086 S12: 0.3353 S13: -0.0497 REMARK 3 S21: -0.2570 S22: 0.1514 S23: -0.0286 REMARK 3 S31: 0.1764 S32: -0.1651 S33: 0.0873 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4861 25.2981 -5.0176 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.3136 REMARK 3 T33: 0.1084 T12: -0.0599 REMARK 3 T13: 0.0039 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 5.0639 L22: 1.8938 REMARK 3 L33: 0.1037 L12: 1.9528 REMARK 3 L13: -0.6108 L23: -0.3984 REMARK 3 S TENSOR REMARK 3 S11: -0.2248 S12: 0.6142 S13: -0.0699 REMARK 3 S21: -0.3244 S22: 0.1741 S23: 0.2738 REMARK 3 S31: 0.2064 S32: 0.0782 S33: -0.0326 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0842 25.3523 5.4439 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.1206 REMARK 3 T33: 0.1442 T12: 0.0120 REMARK 3 T13: -0.0208 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 2.1623 L22: 3.6114 REMARK 3 L33: 0.9163 L12: 1.6816 REMARK 3 L13: 0.6372 L23: 0.5705 REMARK 3 S TENSOR REMARK 3 S11: -0.1067 S12: -0.0601 S13: 0.2738 REMARK 3 S21: -0.0548 S22: 0.0420 S23: 0.3506 REMARK 3 S31: -0.0982 S32: -0.1500 S33: 0.0967 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1322 9.5814 5.5943 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.1418 REMARK 3 T33: 0.1214 T12: -0.0055 REMARK 3 T13: 0.0263 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 3.4290 L22: 2.0423 REMARK 3 L33: 5.3964 L12: 0.3464 REMARK 3 L13: 2.7027 L23: 0.3016 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.3101 S13: -0.1049 REMARK 3 S21: -0.1876 S22: 0.0917 S23: -0.2252 REMARK 3 S31: 0.0363 S32: 0.7355 S33: -0.0706 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8130 10.6660 19.4717 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.1785 REMARK 3 T33: 0.1357 T12: 0.0315 REMARK 3 T13: 0.0253 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 4.3442 L22: 5.6937 REMARK 3 L33: 4.6232 L12: -3.8958 REMARK 3 L13: -4.1853 L23: 4.8104 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: 0.1208 S13: -0.0180 REMARK 3 S21: 0.2059 S22: -0.0542 S23: 0.3333 REMARK 3 S31: 0.0452 S32: -0.5046 S33: 0.1610 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION GEMINI REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54056 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11092 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 14.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2W1X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE PH 4.7, 3% (W/V) REMARK 280 NACL, 300 G/L FICOLL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.55250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.33100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.33100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.82875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.33100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.33100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.27625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.33100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.33100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.82875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.33100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.33100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.27625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.55250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 337 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 362 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 478 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 35 O HOH A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 86.5 REMARK 620 3 SER A 72 OG 92.3 163.0 REMARK 620 4 ARG A 73 O 97.0 93.1 103.8 REMARK 620 5 HOH A 368 O 96.6 81.3 82.0 164.9 REMARK 620 6 HOH A 402 O 171.9 98.5 81.0 89.1 78.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6RT1 RELATED DB: PDB REMARK 900 RELATED ID: 6RT3 RELATED DB: PDB REMARK 900 RELATED ID: 6RT9 RELATED DB: PDB DBREF 6RTA A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET CL A 201 1 HET CL A 202 1 HET NA A 203 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 CL 2(CL 1-) FORMUL 4 NA NA 1+ FORMUL 5 HOH *182(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.02 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.02 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03 LINK O SER A 60 NA NA A 203 1555 1555 2.38 LINK O CYS A 64 NA NA A 203 1555 1555 2.60 LINK OG SER A 72 NA NA A 203 1555 1555 2.41 LINK O ARG A 73 NA NA A 203 1555 1555 2.39 LINK NA NA A 203 O HOH A 368 1555 1555 2.48 LINK NA NA A 203 O HOH A 402 1555 1555 2.43 SITE 1 AC1 2 TYR A 23 ASN A 113 SITE 1 AC2 3 SER A 24 GLY A 26 GLN A 121 SITE 1 AC3 6 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 AC3 6 HOH A 368 HOH A 402 CRYST1 78.662 78.662 37.105 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026950 0.00000