HEADER VIRUS 24-MAY-19 6RTK TITLE CRYOEM STRUCTURE OF MODIFIED TURNIP YELLOWS VIRUS DEVOID OF MINOR TITLE 2 CAPSID PROTEIN READTHROUGH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CAPSID PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: COAT PROTEIN,CP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TURNIP YELLOWS VIRUS (ISOLATE FL-1); SOURCE 3 ORGANISM_COMMON: TUYV; SOURCE 4 ORGANISM_TAXID: 12043; SOURCE 5 STRAIN: ISOLATE FL-1 KEYWDS VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR S.TRAPANI,J.LAI KEE HIM,F.HOH,V.BRAULT,P.BRON REVDAT 2 22-MAY-24 6RTK 1 REMARK REVDAT 1 08-JUL-20 6RTK 0 JRNL AUTH S.TRAPANI,J.LAI KEE HIM,S.BOISSINOT,C.REINBOLD,C.FALLET, JRNL AUTH 2 A.ANCELIN,F.LECORRE,F.HOH,V.ZIEGLER-GRAFF,V.BRAULT,P.BRON JRNL TITL CRYOEM STRUCTURE OF MODIFIED TURNIP YELLOWS VIRUS DEVOID OF JRNL TITL 2 MINOR CAPSID PROTEIN READTHROUGH DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, PHENIX, COOT REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.470 REMARK 3 NUMBER OF PARTICLES : 3003 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6RTK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102550. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BEET WESTERN YELLOWS VIRUS-FL1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 3.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI POLARA 300 REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3800.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 180-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 180-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809020 -0.500000 -0.309010 232.75000 REMARK 350 BIOMT2 2 0.500000 0.309020 0.809020 -143.85000 REMARK 350 BIOMT3 2 -0.309010 -0.809020 0.500000 376.60000 REMARK 350 BIOMT1 3 0.809020 0.500000 -0.309010 0.00000 REMARK 350 BIOMT2 3 -0.500000 0.309020 -0.809020 465.50000 REMARK 350 BIOMT3 3 -0.309010 0.809020 0.500000 0.00000 REMARK 350 BIOMT1 4 0.499990 -0.309010 0.809020 0.00000 REMARK 350 BIOMT2 4 -0.309010 0.809020 0.499990 0.00000 REMARK 350 BIOMT3 4 -0.809020 -0.499990 0.309020 465.50000 REMARK 350 BIOMT1 5 0.499990 -0.309010 -0.809020 376.60000 REMARK 350 BIOMT2 5 -0.309010 0.809020 -0.499990 232.75000 REMARK 350 BIOMT3 5 0.809020 0.499990 0.309020 -143.85000 REMARK 350 BIOMT1 6 0.499990 0.309010 -0.809020 232.75000 REMARK 350 BIOMT2 6 0.309010 0.809020 0.499990 -143.85000 REMARK 350 BIOMT3 6 0.809020 -0.499990 0.309020 88.90000 REMARK 350 BIOMT1 7 0.499990 0.309010 0.809020 -143.85000 REMARK 350 BIOMT2 7 0.309010 0.809020 -0.499990 88.90000 REMARK 350 BIOMT3 7 -0.809020 0.499990 0.309020 232.75000 REMARK 350 BIOMT1 8 0.309030 -0.809010 0.500000 232.74000 REMARK 350 BIOMT2 8 0.809010 0.500010 0.309010 -143.85000 REMARK 350 BIOMT3 8 -0.500000 0.309010 0.809020 88.90000 REMARK 350 BIOMT1 9 0.309030 0.809010 -0.500000 88.90000 REMARK 350 BIOMT2 9 -0.809010 0.500010 0.309010 232.75000 REMARK 350 BIOMT3 9 0.500000 0.309010 0.809020 -143.85000 REMARK 350 BIOMT1 10 0.309030 -0.809010 -0.500000 465.50000 REMARK 350 BIOMT2 10 0.809010 0.500010 -0.309010 0.00000 REMARK 350 BIOMT3 10 0.500000 -0.309010 0.809020 0.00000 REMARK 350 BIOMT1 11 0.309030 0.809010 0.500000 -143.85000 REMARK 350 BIOMT2 11 -0.809010 0.500010 -0.309010 376.59000 REMARK 350 BIOMT3 11 -0.500000 -0.309010 0.809020 232.75000 REMARK 350 BIOMT1 12 0.809020 0.500000 0.309010 -143.85000 REMARK 350 BIOMT2 12 -0.500000 0.309020 0.809020 88.90000 REMARK 350 BIOMT3 12 0.309010 -0.809020 0.500000 232.75000 REMARK 350 BIOMT1 13 0.809020 -0.500000 0.309010 88.90000 REMARK 350 BIOMT2 13 0.500000 0.309020 -0.809020 232.75000 REMARK 350 BIOMT3 13 0.309010 0.809020 0.500000 -143.85000 REMARK 350 BIOMT1 14 0.499990 -0.309010 -0.809020 376.60000 REMARK 350 BIOMT2 14 0.309010 -0.809020 0.499990 232.75000 REMARK 350 BIOMT3 14 -0.809020 -0.499990 -0.309020 609.35000 REMARK 350 BIOMT1 15 0.499990 0.309010 -0.809020 232.75000 REMARK 350 BIOMT2 15 -0.309010 -0.809020 -0.499990 609.35000 REMARK 350 BIOMT3 15 -0.809020 0.499990 -0.309020 376.60000 REMARK 350 BIOMT1 16 -0.309030 -0.809010 0.500000 376.60000 REMARK 350 BIOMT2 16 -0.809010 0.500010 0.309010 232.75000 REMARK 350 BIOMT3 16 -0.500000 -0.309010 -0.809020 609.35000 REMARK 350 BIOMT1 17 -0.309030 -0.809010 -0.500000 609.35000 REMARK 350 BIOMT2 17 -0.809010 0.500010 -0.309010 376.59000 REMARK 350 BIOMT3 17 0.500000 0.309010 -0.809020 232.75000 REMARK 350 BIOMT1 18 -0.309030 0.809010 -0.500000 232.76000 REMARK 350 BIOMT2 18 0.809010 0.500010 0.309010 -143.85000 REMARK 350 BIOMT3 18 0.500000 -0.309010 -0.809020 376.60000 REMARK 350 BIOMT1 19 -0.309030 0.809010 0.500000 0.00000 REMARK 350 BIOMT2 19 0.809010 0.500010 -0.309010 0.00000 REMARK 350 BIOMT3 19 -0.500000 0.309010 -0.809020 465.50000 REMARK 350 BIOMT1 20 -0.809020 -0.500000 0.309010 465.50000 REMARK 350 BIOMT2 20 0.500000 -0.309020 0.809020 0.00000 REMARK 350 BIOMT3 20 -0.309010 0.809020 0.500000 0.00000 REMARK 350 BIOMT1 21 -0.809020 0.500000 -0.309010 376.60000 REMARK 350 BIOMT2 21 -0.500000 -0.309020 0.809020 232.75000 REMARK 350 BIOMT3 21 0.309010 0.809020 0.500000 -143.85000 REMARK 350 BIOMT1 22 -0.809020 -0.500000 -0.309010 609.35000 REMARK 350 BIOMT2 22 0.500000 -0.309020 -0.809020 376.60000 REMARK 350 BIOMT3 22 0.309010 -0.809020 0.500000 232.75000 REMARK 350 BIOMT1 23 -0.809020 0.500000 0.309010 232.75000 REMARK 350 BIOMT2 23 -0.500000 -0.309020 -0.809020 609.35000 REMARK 350 BIOMT3 23 -0.309010 -0.809020 0.500000 376.60000 REMARK 350 BIOMT1 24 0.499990 0.309010 0.809020 -143.85000 REMARK 350 BIOMT2 24 -0.309010 -0.809020 0.499990 376.60000 REMARK 350 BIOMT3 24 0.809020 -0.499990 -0.309020 232.75000 REMARK 350 BIOMT1 25 0.499990 -0.309010 0.809020 0.00000 REMARK 350 BIOMT2 25 0.309010 -0.809020 -0.499990 465.50000 REMARK 350 BIOMT3 25 0.809020 0.499990 -0.309020 0.00000 REMARK 350 BIOMT1 26 0.000000 -1.000000 0.000000 465.50000 REMARK 350 BIOMT2 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 26 -1.000000 0.000000 0.000000 465.50000 REMARK 350 BIOMT1 27 0.000000 0.000000 -1.000000 465.50000 REMARK 350 BIOMT2 27 -1.000000 0.000000 0.000000 465.50000 REMARK 350 BIOMT3 27 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 28 0.000000 0.000000 -1.000000 465.50000 REMARK 350 BIOMT2 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 28 0.000000 -1.000000 0.000000 465.50000 REMARK 350 BIOMT1 29 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 29 0.000000 0.000000 -1.000000 465.50000 REMARK 350 BIOMT3 29 -1.000000 0.000000 0.000000 465.50000 REMARK 350 BIOMT1 30 0.809020 -0.500000 0.309010 88.90000 REMARK 350 BIOMT2 30 -0.500000 -0.309020 0.809020 232.75000 REMARK 350 BIOMT3 30 -0.309010 -0.809020 -0.500000 609.35000 REMARK 350 BIOMT1 31 0.809020 -0.500000 -0.309010 232.75000 REMARK 350 BIOMT2 31 -0.500000 -0.309020 -0.809020 609.35000 REMARK 350 BIOMT3 31 0.309010 0.809020 -0.500000 88.90000 REMARK 350 BIOMT1 32 0.809020 0.500000 -0.309010 0.00000 REMARK 350 BIOMT2 32 0.500000 -0.309020 0.809020 0.00000 REMARK 350 BIOMT3 32 0.309010 -0.809020 -0.500000 465.50000 REMARK 350 BIOMT1 33 0.809020 0.500000 0.309010 -143.85000 REMARK 350 BIOMT2 33 0.500000 -0.309020 -0.809020 376.60000 REMARK 350 BIOMT3 33 -0.309010 0.809020 -0.500000 232.75000 REMARK 350 BIOMT1 34 -0.309030 -0.809010 -0.500000 609.35000 REMARK 350 BIOMT2 34 0.809010 -0.500010 0.309010 88.91000 REMARK 350 BIOMT3 34 -0.500000 -0.309010 0.809020 232.75000 REMARK 350 BIOMT1 35 -0.309030 0.809010 -0.500000 232.76000 REMARK 350 BIOMT2 35 -0.809010 -0.500010 -0.309010 609.35000 REMARK 350 BIOMT3 35 -0.500000 0.309010 0.809020 88.90000 REMARK 350 BIOMT1 36 -0.499990 -0.309010 0.809020 232.75000 REMARK 350 BIOMT2 36 0.309010 0.809020 0.499990 -143.85000 REMARK 350 BIOMT3 36 -0.809020 0.499990 -0.309020 376.60000 REMARK 350 BIOMT1 37 -0.499990 0.309010 -0.809020 465.50000 REMARK 350 BIOMT2 37 -0.309010 0.809020 0.499990 0.00000 REMARK 350 BIOMT3 37 0.809020 0.499990 -0.309020 0.00000 REMARK 350 BIOMT1 38 -0.499990 -0.309010 -0.809020 609.35000 REMARK 350 BIOMT2 38 0.309010 0.809020 -0.499990 88.90000 REMARK 350 BIOMT3 38 0.809020 -0.499990 -0.309020 232.75000 REMARK 350 BIOMT1 39 -0.500000 0.309010 0.809020 88.90000 REMARK 350 BIOMT2 39 -0.309010 0.809020 -0.499990 232.75000 REMARK 350 BIOMT3 39 -0.809020 -0.499990 -0.309020 609.35000 REMARK 350 BIOMT1 40 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 40 -1.000000 0.000000 0.000000 465.50000 REMARK 350 BIOMT3 40 0.000000 -1.000000 0.000000 465.50000 REMARK 350 BIOMT1 41 0.000000 -1.000000 0.000000 465.50000 REMARK 350 BIOMT2 41 0.000000 0.000000 -1.000000 465.50000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 42 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 42 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 43 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 43 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 43 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 44 -0.309030 -0.809010 0.500000 376.60000 REMARK 350 BIOMT2 44 0.809010 -0.500010 -0.309010 232.75000 REMARK 350 BIOMT3 44 0.500000 0.309010 0.809020 -143.85000 REMARK 350 BIOMT1 45 -0.309030 0.809010 0.500000 0.00000 REMARK 350 BIOMT2 45 -0.809010 -0.500010 0.309010 465.50000 REMARK 350 BIOMT3 45 0.500000 -0.309010 0.809020 0.00000 REMARK 350 BIOMT1 46 0.309030 -0.809010 -0.500000 465.50000 REMARK 350 BIOMT2 46 -0.809010 -0.500010 0.309010 465.50000 REMARK 350 BIOMT3 46 -0.500000 0.309010 -0.809020 465.50000 REMARK 350 BIOMT1 47 0.309030 0.809010 -0.500000 88.90000 REMARK 350 BIOMT2 47 0.809010 -0.500010 -0.309010 232.75000 REMARK 350 BIOMT3 47 -0.500000 -0.309010 -0.809020 609.35000 REMARK 350 BIOMT1 48 -0.499990 -0.309010 -0.809020 609.35000 REMARK 350 BIOMT2 48 -0.309010 -0.809020 0.499990 376.60000 REMARK 350 BIOMT3 48 -0.809020 0.499990 0.309020 232.75000 REMARK 350 BIOMT1 49 -0.499990 0.309010 -0.809020 465.50000 REMARK 350 BIOMT2 49 0.309010 -0.809020 -0.499990 465.50000 REMARK 350 BIOMT3 49 -0.809020 -0.499990 0.309020 465.50000 REMARK 350 BIOMT1 50 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 -1.000000 0.000000 465.50000 REMARK 350 BIOMT3 50 0.000000 0.000000 -1.000000 465.50000 REMARK 350 BIOMT1 51 -0.809020 -0.500000 -0.309010 609.35000 REMARK 350 BIOMT2 51 -0.500000 0.309020 0.809020 88.90000 REMARK 350 BIOMT3 51 -0.309010 0.809020 -0.500000 232.75000 REMARK 350 BIOMT1 52 -0.809020 0.500000 -0.309010 376.60000 REMARK 350 BIOMT2 52 0.500000 0.309020 -0.809020 232.75000 REMARK 350 BIOMT3 52 -0.309010 -0.809020 -0.500000 609.35000 REMARK 350 BIOMT1 53 0.309030 -0.809010 0.500000 232.74000 REMARK 350 BIOMT2 53 -0.809010 -0.500010 -0.309010 609.35000 REMARK 350 BIOMT3 53 0.500000 -0.309010 -0.809020 376.60000 REMARK 350 BIOMT1 54 0.309030 0.809010 0.500000 -143.85000 REMARK 350 BIOMT2 54 0.809010 -0.500010 0.309010 88.91000 REMARK 350 BIOMT3 54 0.500000 0.309010 -0.809020 232.75000 REMARK 350 BIOMT1 55 -1.000000 0.000000 0.000000 465.50000 REMARK 350 BIOMT2 55 0.000000 -1.000000 0.000000 465.50000 REMARK 350 BIOMT3 55 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 56 -1.000000 0.000000 0.000000 465.50000 REMARK 350 BIOMT2 56 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 0.000000 -1.000000 465.50000 REMARK 350 BIOMT1 57 -0.809020 0.500000 0.309010 232.75000 REMARK 350 BIOMT2 57 0.500000 0.309020 0.809020 -143.85000 REMARK 350 BIOMT3 57 0.309010 0.809020 -0.500000 88.90000 REMARK 350 BIOMT1 58 -0.809020 -0.500000 0.309010 465.50000 REMARK 350 BIOMT2 58 -0.500000 0.309020 -0.809020 465.50000 REMARK 350 BIOMT3 58 0.309010 -0.809020 -0.500000 465.50000 REMARK 350 BIOMT1 59 -0.499990 0.309010 0.809020 88.90000 REMARK 350 BIOMT2 59 0.309010 -0.809020 0.499990 232.75000 REMARK 350 BIOMT3 59 0.809020 0.499990 0.309020 -143.85000 REMARK 350 BIOMT1 60 -0.499990 -0.309010 0.809020 232.75000 REMARK 350 BIOMT2 60 -0.309010 -0.809020 -0.499990 609.35000 REMARK 350 BIOMT3 60 0.809020 -0.499990 0.309020 88.90000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 VAL A 5 REMARK 465 GLY A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 ILE A 9 REMARK 465 ILE A 10 REMARK 465 ASN A 11 REMARK 465 GLY A 12 REMARK 465 ARG A 13 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 ARG A 18 REMARK 465 GLN A 19 REMARK 465 THR A 20 REMARK 465 ARG A 21 REMARK 465 ARG A 22 REMARK 465 ALA A 23 REMARK 465 GLN A 24 REMARK 465 ARG A 25 REMARK 465 PRO A 26 REMARK 465 GLN A 27 REMARK 465 PRO A 28 REMARK 465 VAL A 29 REMARK 465 VAL A 30 REMARK 465 VAL A 31 REMARK 465 VAL A 32 REMARK 465 GLN A 33 REMARK 465 THR A 34 REMARK 465 SER A 35 REMARK 465 ARG A 36 REMARK 465 ALA A 37 REMARK 465 THR A 38 REMARK 465 GLN A 39 REMARK 465 ARG A 40 REMARK 465 ARG A 41 REMARK 465 PRO A 42 REMARK 465 ARG A 43 REMARK 465 ARG A 44 REMARK 465 ARG A 45 REMARK 465 ARG A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 ASN A 49 REMARK 465 ASN A 50 REMARK 465 ARG A 51 REMARK 465 THR A 52 REMARK 465 GLY A 53 REMARK 465 ARG A 54 REMARK 465 THR A 55 REMARK 465 VAL A 56 REMARK 465 PRO A 57 REMARK 465 THR A 58 REMARK 465 ARG A 59 REMARK 465 GLY A 60 REMARK 465 ALA A 61 REMARK 465 GLY A 62 REMARK 465 SER A 63 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 THR B 3 REMARK 465 VAL B 4 REMARK 465 VAL B 5 REMARK 465 GLY B 6 REMARK 465 ARG B 7 REMARK 465 ARG B 8 REMARK 465 ILE B 9 REMARK 465 ILE B 10 REMARK 465 ASN B 11 REMARK 465 GLY B 12 REMARK 465 ARG B 13 REMARK 465 ARG B 14 REMARK 465 ARG B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 ARG B 18 REMARK 465 GLN B 19 REMARK 465 THR B 20 REMARK 465 ARG B 21 REMARK 465 ARG B 22 REMARK 465 ALA B 23 REMARK 465 GLN B 24 REMARK 465 ARG B 25 REMARK 465 PRO B 26 REMARK 465 GLN B 27 REMARK 465 PRO B 28 REMARK 465 VAL B 29 REMARK 465 VAL B 30 REMARK 465 VAL B 31 REMARK 465 VAL B 32 REMARK 465 GLN B 33 REMARK 465 THR B 34 REMARK 465 SER B 35 REMARK 465 ARG B 36 REMARK 465 ALA B 37 REMARK 465 THR B 38 REMARK 465 GLN B 39 REMARK 465 ARG B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 ARG B 43 REMARK 465 ARG B 44 REMARK 465 ARG B 45 REMARK 465 ARG B 46 REMARK 465 ARG B 47 REMARK 465 GLY B 48 REMARK 465 ASN B 49 REMARK 465 ASN B 50 REMARK 465 ARG B 51 REMARK 465 THR B 52 REMARK 465 GLY B 53 REMARK 465 ARG B 54 REMARK 465 THR B 55 REMARK 465 VAL B 56 REMARK 465 PRO B 57 REMARK 465 THR B 58 REMARK 465 ARG B 59 REMARK 465 GLY B 60 REMARK 465 ALA B 61 REMARK 465 GLY B 62 REMARK 465 SER B 63 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 THR C 3 REMARK 465 VAL C 4 REMARK 465 VAL C 5 REMARK 465 GLY C 6 REMARK 465 ARG C 7 REMARK 465 ARG C 8 REMARK 465 ILE C 9 REMARK 465 ILE C 10 REMARK 465 ASN C 11 REMARK 465 GLY C 12 REMARK 465 ARG C 13 REMARK 465 ARG C 14 REMARK 465 ARG C 15 REMARK 465 PRO C 16 REMARK 465 ARG C 17 REMARK 465 ARG C 18 REMARK 465 GLN C 19 REMARK 465 THR C 20 REMARK 465 ARG C 21 REMARK 465 ARG C 22 REMARK 465 ALA C 23 REMARK 465 GLN C 24 REMARK 465 ARG C 25 REMARK 465 PRO C 26 REMARK 465 GLN C 27 REMARK 465 PRO C 28 REMARK 465 VAL C 29 REMARK 465 VAL C 30 REMARK 465 VAL C 31 REMARK 465 VAL C 32 REMARK 465 GLN C 33 REMARK 465 THR C 34 REMARK 465 SER C 35 REMARK 465 ARG C 36 REMARK 465 ALA C 37 REMARK 465 THR C 38 REMARK 465 GLN C 39 REMARK 465 ARG C 40 REMARK 465 ARG C 41 REMARK 465 PRO C 42 REMARK 465 ARG C 43 REMARK 465 ARG C 44 REMARK 465 ARG C 45 REMARK 465 ARG C 46 REMARK 465 ARG C 47 REMARK 465 GLY C 48 REMARK 465 ASN C 49 REMARK 465 ASN C 50 REMARK 465 ARG C 51 REMARK 465 THR C 52 REMARK 465 GLY C 53 REMARK 465 ARG C 54 REMARK 465 THR C 55 REMARK 465 VAL C 56 REMARK 465 PRO C 57 REMARK 465 THR C 58 REMARK 465 ARG C 59 REMARK 465 GLY C 60 REMARK 465 ALA C 61 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 73 8.65 58.93 REMARK 500 SER A 108 -161.52 -79.59 REMARK 500 MET A 109 130.02 -33.91 REMARK 500 SER A 120 2.31 56.72 REMARK 500 ASN A 162 0.92 81.36 REMARK 500 THR A 164 28.66 -140.69 REMARK 500 ASN A 200 73.90 59.21 REMARK 500 SER B 87 15.67 54.26 REMARK 500 SER B 108 -162.82 -75.92 REMARK 500 SER B 120 -3.00 64.97 REMARK 500 CYS B 134 91.57 -67.37 REMARK 500 ASN B 137 -4.36 66.92 REMARK 500 SER B 140 -60.98 -102.02 REMARK 500 ASN B 162 -7.74 79.86 REMARK 500 THR B 164 13.08 -141.38 REMARK 500 TRP B 166 68.83 62.61 REMARK 500 HIS B 167 170.99 -59.05 REMARK 500 ASN B 200 73.10 60.70 REMARK 500 SER C 108 -161.29 -77.43 REMARK 500 MET C 109 129.26 -37.90 REMARK 500 SER C 120 -10.60 77.40 REMARK 500 CYS C 134 104.07 -59.66 REMARK 500 ASN C 137 -7.45 67.31 REMARK 500 SER C 140 -61.32 -93.27 REMARK 500 ASN C 162 -3.38 82.94 REMARK 500 ASN C 200 71.00 57.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10001 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF MODIFIED TURNIP YELLOWS VIRUS DEVOID OF MINOR REMARK 900 CAPSID PROTEIN READTHROUGH DOMAIN DBREF 6RTK A 1 202 UNP P09508 CAPSD_TYYVF 1 202 DBREF 6RTK B 1 202 UNP P09508 CAPSD_TYYVF 1 202 DBREF 6RTK C 1 202 UNP P09508 CAPSD_TYYVF 1 202 SEQRES 1 A 202 MET ASN THR VAL VAL GLY ARG ARG ILE ILE ASN GLY ARG SEQRES 2 A 202 ARG ARG PRO ARG ARG GLN THR ARG ARG ALA GLN ARG PRO SEQRES 3 A 202 GLN PRO VAL VAL VAL VAL GLN THR SER ARG ALA THR GLN SEQRES 4 A 202 ARG ARG PRO ARG ARG ARG ARG ARG GLY ASN ASN ARG THR SEQRES 5 A 202 GLY ARG THR VAL PRO THR ARG GLY ALA GLY SER SER GLU SEQRES 6 A 202 THR PHE VAL PHE SER LYS ASP ASN LEU ALA GLY SER SER SEQRES 7 A 202 SER GLY ALA ILE THR PHE GLY PRO SER LEU SER ASP CYS SEQRES 8 A 202 PRO ALA PHE SER ASN GLY MET LEU LYS ALA TYR HIS GLU SEQRES 9 A 202 TYR LYS ILE SER MET VAL ILE LEU GLU PHE VAL SER GLU SEQRES 10 A 202 ALA SER SER GLN ASN SER GLY SER ILE ALA TYR GLU LEU SEQRES 11 A 202 ASP PRO HIS CYS LYS LEU ASN SER LEU SER SER THR ILE SEQRES 12 A 202 ASN LYS PHE GLY ILE THR LYS PRO GLY LYS ARG ALA PHE SEQRES 13 A 202 THR ALA SER TYR ILE ASN GLY THR GLU TRP HIS ASP VAL SEQRES 14 A 202 ALA GLU ASP GLN PHE ARG ILE LEU TYR LYS GLY ASN GLY SEQRES 15 A 202 SER SER SER ILE ALA GLY SER PHE ARG ILE THR ILE LYS SEQRES 16 A 202 CYS GLN PHE HIS ASN PRO LYS SEQRES 1 B 202 MET ASN THR VAL VAL GLY ARG ARG ILE ILE ASN GLY ARG SEQRES 2 B 202 ARG ARG PRO ARG ARG GLN THR ARG ARG ALA GLN ARG PRO SEQRES 3 B 202 GLN PRO VAL VAL VAL VAL GLN THR SER ARG ALA THR GLN SEQRES 4 B 202 ARG ARG PRO ARG ARG ARG ARG ARG GLY ASN ASN ARG THR SEQRES 5 B 202 GLY ARG THR VAL PRO THR ARG GLY ALA GLY SER SER GLU SEQRES 6 B 202 THR PHE VAL PHE SER LYS ASP ASN LEU ALA GLY SER SER SEQRES 7 B 202 SER GLY ALA ILE THR PHE GLY PRO SER LEU SER ASP CYS SEQRES 8 B 202 PRO ALA PHE SER ASN GLY MET LEU LYS ALA TYR HIS GLU SEQRES 9 B 202 TYR LYS ILE SER MET VAL ILE LEU GLU PHE VAL SER GLU SEQRES 10 B 202 ALA SER SER GLN ASN SER GLY SER ILE ALA TYR GLU LEU SEQRES 11 B 202 ASP PRO HIS CYS LYS LEU ASN SER LEU SER SER THR ILE SEQRES 12 B 202 ASN LYS PHE GLY ILE THR LYS PRO GLY LYS ARG ALA PHE SEQRES 13 B 202 THR ALA SER TYR ILE ASN GLY THR GLU TRP HIS ASP VAL SEQRES 14 B 202 ALA GLU ASP GLN PHE ARG ILE LEU TYR LYS GLY ASN GLY SEQRES 15 B 202 SER SER SER ILE ALA GLY SER PHE ARG ILE THR ILE LYS SEQRES 16 B 202 CYS GLN PHE HIS ASN PRO LYS SEQRES 1 C 202 MET ASN THR VAL VAL GLY ARG ARG ILE ILE ASN GLY ARG SEQRES 2 C 202 ARG ARG PRO ARG ARG GLN THR ARG ARG ALA GLN ARG PRO SEQRES 3 C 202 GLN PRO VAL VAL VAL VAL GLN THR SER ARG ALA THR GLN SEQRES 4 C 202 ARG ARG PRO ARG ARG ARG ARG ARG GLY ASN ASN ARG THR SEQRES 5 C 202 GLY ARG THR VAL PRO THR ARG GLY ALA GLY SER SER GLU SEQRES 6 C 202 THR PHE VAL PHE SER LYS ASP ASN LEU ALA GLY SER SER SEQRES 7 C 202 SER GLY ALA ILE THR PHE GLY PRO SER LEU SER ASP CYS SEQRES 8 C 202 PRO ALA PHE SER ASN GLY MET LEU LYS ALA TYR HIS GLU SEQRES 9 C 202 TYR LYS ILE SER MET VAL ILE LEU GLU PHE VAL SER GLU SEQRES 10 C 202 ALA SER SER GLN ASN SER GLY SER ILE ALA TYR GLU LEU SEQRES 11 C 202 ASP PRO HIS CYS LYS LEU ASN SER LEU SER SER THR ILE SEQRES 12 C 202 ASN LYS PHE GLY ILE THR LYS PRO GLY LYS ARG ALA PHE SEQRES 13 C 202 THR ALA SER TYR ILE ASN GLY THR GLU TRP HIS ASP VAL SEQRES 14 C 202 ALA GLU ASP GLN PHE ARG ILE LEU TYR LYS GLY ASN GLY SEQRES 15 C 202 SER SER SER ILE ALA GLY SER PHE ARG ILE THR ILE LYS SEQRES 16 C 202 CYS GLN PHE HIS ASN PRO LYS HELIX 1 AA1 CYS A 91 LYS A 100 1 10 HELIX 2 AA2 THR A 157 ASN A 162 1 6 HELIX 3 AA3 CYS B 91 TYR B 102 1 12 HELIX 4 AA4 THR B 157 ASN B 162 1 6 HELIX 5 AA5 CYS C 91 TYR C 102 1 12 HELIX 6 AA6 THR C 157 ASN C 162 1 6 SHEET 1 AA1 4 GLU A 65 ASP A 72 0 SHEET 2 AA1 4 GLY A 188 PRO A 201 -1 O PHE A 190 N LYS A 71 SHEET 3 AA1 4 TYR A 102 SER A 116 -1 N GLU A 104 O HIS A 199 SHEET 4 AA1 4 GLY A 152 PHE A 156 -1 O ARG A 154 N LEU A 112 SHEET 1 AA2 4 GLU A 65 ASP A 72 0 SHEET 2 AA2 4 GLY A 188 PRO A 201 -1 O PHE A 190 N LYS A 71 SHEET 3 AA2 4 TYR A 102 SER A 116 -1 N GLU A 104 O HIS A 199 SHEET 4 AA2 4 HIS A 167 ASP A 168 -1 O HIS A 167 N TYR A 105 SHEET 1 AA3 4 SER A 78 PHE A 84 0 SHEET 2 AA3 4 PHE A 174 ASN A 181 -1 O ILE A 176 N ILE A 82 SHEET 3 AA3 4 SER A 125 ASP A 131 -1 N ALA A 127 O LYS A 179 SHEET 4 AA3 4 ASN A 144 GLY A 147 -1 O PHE A 146 N ILE A 126 SHEET 1 AA4 4 THR B 66 LYS B 71 0 SHEET 2 AA4 4 SER B 189 HIS B 199 -1 O PHE B 190 N LYS B 71 SHEET 3 AA4 4 VAL B 110 VAL B 115 -1 N ILE B 111 O THR B 193 SHEET 4 AA4 4 GLY B 152 PHE B 156 -1 O GLY B 152 N PHE B 114 SHEET 1 AA5 4 THR B 66 LYS B 71 0 SHEET 2 AA5 4 SER B 189 HIS B 199 -1 O PHE B 190 N LYS B 71 SHEET 3 AA5 4 GLU B 104 ILE B 107 -1 N GLU B 104 O HIS B 199 SHEET 4 AA5 4 HIS B 167 ASP B 168 -1 O HIS B 167 N TYR B 105 SHEET 1 AA6 4 SER B 79 PHE B 84 0 SHEET 2 AA6 4 PHE B 174 ASN B 181 -1 O TYR B 178 N GLY B 80 SHEET 3 AA6 4 SER B 125 ASP B 131 -1 N SER B 125 O ASN B 181 SHEET 4 AA6 4 ASN B 144 GLY B 147 -1 O PHE B 146 N ILE B 126 SHEET 1 AA7 4 SER C 63 LYS C 71 0 SHEET 2 AA7 4 SER C 189 HIS C 199 -1 O PHE C 198 N SER C 63 SHEET 3 AA7 4 GLU C 104 VAL C 115 -1 N ILE C 111 O THR C 193 SHEET 4 AA7 4 GLY C 152 PHE C 156 -1 O ARG C 154 N LEU C 112 SHEET 1 AA8 4 SER C 63 LYS C 71 0 SHEET 2 AA8 4 SER C 189 HIS C 199 -1 O PHE C 198 N SER C 63 SHEET 3 AA8 4 GLU C 104 VAL C 115 -1 N ILE C 111 O THR C 193 SHEET 4 AA8 4 HIS C 167 ASP C 168 -1 O HIS C 167 N TYR C 105 SHEET 1 AA9 4 SER C 78 PHE C 84 0 SHEET 2 AA9 4 PHE C 174 ASN C 181 -1 O TYR C 178 N GLY C 80 SHEET 3 AA9 4 SER C 125 ASP C 131 -1 N SER C 125 O ASN C 181 SHEET 4 AA9 4 ASN C 144 GLY C 147 -1 O ASN C 144 N TYR C 128 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000