HEADER OXIDOREDUCTASE 26-MAY-19 6RTR TITLE PIPERIDEINE-6-CARBOXYLATE DEHYDROGENASE FROM STREPTOMYCES CLAVULIGERUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEMIALDEHYDE DEHYDROGENASE PCD; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CLAVULIGERUS ATCC 27064; SOURCE 3 ORGANISM_TAXID: 443255; SOURCE 4 ATCC: 27064; SOURCE 5 GENE: PCD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET9A KEYWDS OXIDOREDUCTASE, ANTIBIOTIC BIOSYNTHESIS, STREPTOMYCES CLAVULIGERUS EXPDTA X-RAY DIFFRACTION AUTHOR D.HASSE,J.HUELSEMANN,G.CARLSSON,I.ANDERSSON REVDAT 2 24-JAN-24 6RTR 1 REMARK REVDAT 1 18-DEC-19 6RTR 0 JRNL AUTH D.HASSE,J.HULSEMANN,G.H.CARLSSON,K.VALEGARD,I.ANDERSSON JRNL TITL STRUCTURE AND MECHANISM OF PIPERIDEINE-6-CARBOXYLATE JRNL TITL 2 DEHYDROGENASE FROM STREPTOMYCES CLAVULIGERUS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 1107 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31793904 JRNL DOI 10.1107/S2059798319014852 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 153270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8067 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11120 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 585 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7426 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 708 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.529 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7695 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7409 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10490 ; 1.711 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16937 ; 1.012 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1007 ; 5.953 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 331 ;32.696 ;22.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1174 ;12.562 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 84 ;16.863 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1238 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8833 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1723 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4013 ; 1.815 ; 2.226 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4010 ; 1.804 ; 2.224 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5008 ; 2.594 ; 3.326 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5009 ; 2.594 ; 3.327 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3682 ; 3.124 ; 2.652 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3683 ; 3.124 ; 2.652 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5478 ; 4.801 ; 3.823 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9132 ; 6.327 ;19.324 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8781 ; 6.179 ;18.758 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RTR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9764 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 161305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JG7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 5, 2.2 M REMARK 280 AMMONIUM SULPHATE, 0.2 M LITHIUM ACETATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.36000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.18500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.36000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.18500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.55000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 55.36000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.18500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.55000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 55.36000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.18500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -233.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -110.72000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -78.55000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1013 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 843 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1034 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 244 REMARK 465 THR A 245 REMARK 465 ARG A 246 REMARK 465 MET A 247 REMARK 465 GLY A 248 REMARK 465 GLN A 512 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 SER B 244 REMARK 465 THR B 245 REMARK 465 ARG B 246 REMARK 465 MET B 247 REMARK 465 GLY B 248 REMARK 465 GLN B 506 REMARK 465 GLY B 507 REMARK 465 VAL B 508 REMARK 465 ASP B 509 REMARK 465 PHE B 510 REMARK 465 SER B 511 REMARK 465 GLN B 512 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 132 -84.92 -115.09 REMARK 500 LEU A 133 53.38 37.15 REMARK 500 ALA A 223 -158.66 -99.62 REMARK 500 PHE A 372 59.09 31.57 REMARK 500 ALA A 376 81.90 -154.69 REMARK 500 LEU A 427 -73.98 -86.81 REMARK 500 LYS A 472 -131.47 58.73 REMARK 500 SER A 480 -105.82 79.80 REMARK 500 SER A 482 -136.26 45.93 REMARK 500 PHE A 510 3.97 -65.24 REMARK 500 GLN B 132 -78.46 -118.73 REMARK 500 LEU B 133 54.60 30.27 REMARK 500 PHE B 372 57.67 34.53 REMARK 500 ALA B 376 82.74 -170.91 REMARK 500 LYS B 472 -136.36 59.77 REMARK 500 SER B 480 -104.43 76.86 REMARK 500 SER B 482 -131.21 44.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 607 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6RTS RELATED DB: PDB REMARK 900 RELATED ID: 6RTT RELATED DB: PDB REMARK 900 RELATED ID: 6RTU RELATED DB: PDB DBREF 6RTR A 1 512 UNP O85725 O85725_STRC2 1 512 DBREF 6RTR B 1 512 UNP O85725 O85725_STRC2 1 512 SEQADV 6RTR THR A 140 UNP O85725 SER 140 ENGINEERED MUTATION SEQADV 6RTR THR A 503 UNP O85725 ALA 503 ENGINEERED MUTATION SEQADV 6RTR THR B 140 UNP O85725 SER 140 ENGINEERED MUTATION SEQADV 6RTR THR B 503 UNP O85725 ALA 503 ENGINEERED MUTATION SEQRES 1 A 512 MET VAL THR ALA ALA ILE SER GLY THR ASP GLU ILE ARG SEQRES 2 A 512 ALA ARG ALA GLU GLN ALA LEU THR ARG CYS GLY VAL ASP SEQRES 3 A 512 LEU THR ALA VAL LYS GLY ASP ALA LEU THR ALA ARG THR SEQRES 4 A 512 PRO LEU THR GLY ALA ASP LEU PHE GLY LEU ARG ALA GLN SEQRES 5 A 512 THR PRO GLU ASP VAL ASP ARG ALA VAL GLU ALA ALA HIS SEQRES 6 A 512 THR ALA PHE LEU THR TRP ARG THR THR PRO ALA PRO VAL SEQRES 7 A 512 ARG GLY ALA LEU VAL LYS ARG PHE GLY GLU LEU LEU THR SEQRES 8 A 512 GLU HIS LYS GLN ASP LEU ALA ASP LEU VAL THR ILE GLU SEQRES 9 A 512 ALA GLY LYS ILE ARG SER GLU ALA LEU GLY GLU VAL GLN SEQRES 10 A 512 GLU MET ILE ASP ILE CYS ASP PHE ALA VAL GLY LEU SER SEQRES 11 A 512 ARG GLN LEU TYR GLY ARG THR MET PRO THR GLU ARG PRO SEQRES 12 A 512 GLY HIS ARG LEU MET GLU THR TRP HIS PRO LEU GLY VAL SEQRES 13 A 512 VAL GLY VAL ILE SER ALA PHE ASN PHE PRO VAL ALA VAL SEQRES 14 A 512 TRP ALA TRP ASN ALA ALA VAL ALA LEU VAL CYS GLY ASP SEQRES 15 A 512 THR VAL VAL TRP LYS PRO SER GLU LEU THR PRO LEU THR SEQRES 16 A 512 ALA LEU ALA CYS ALA ALA LEU LEU ASP LEU ALA ILE ALA SEQRES 17 A 512 ASP ALA GLY ALA PRO LYS GLY LEU ASN GLN VAL VAL VAL SEQRES 18 A 512 GLY ALA ALA ASP VAL GLY GLU ARG LEU VAL ASP SER PRO SEQRES 19 A 512 ARG VAL PRO LEU VAL SER ALA THR GLY SER THR ARG MET SEQRES 20 A 512 GLY ARG ALA VAL GLY PRO ARG VAL ALA ALA ARG PHE GLY SEQRES 21 A 512 ARG THR ILE LEU GLU LEU GLY GLY ASN ASN ALA ALA VAL SEQRES 22 A 512 VAL THR PRO SER ALA ASP LEU ASP LEU THR VAL ASN ALA SEQRES 23 A 512 ALA VAL PHE ALA ALA ALA GLY THR ALA GLY GLN ARG CYS SEQRES 24 A 512 THR THR LEU ARG ARG LEU ILE VAL HIS GLU ASP ILE ALA SEQRES 25 A 512 ASP THR VAL VAL GLU ARG LEU THR ALA ALA PHE GLU ARG SEQRES 26 A 512 LEU PRO ILE GLY ASP PRO PHE GLN ASP THR THR LEU VAL SEQRES 27 A 512 GLY PRO LEU VAL ASN GLU ALA ALA PHE GLY ARG MET ARG SEQRES 28 A 512 GLU ALA VAL GLU ARG ALA THR ALA GLU GLY GLY THR LEU SEQRES 29 A 512 CYS ALA GLY GLY GLU ARG GLN PHE PRO ASP ALA ALA PRO SEQRES 30 A 512 GLY ALA TYR TYR VAL ARG PRO ALA LEU VAL ARG MET PRO SEQRES 31 A 512 ALA GLN THR ALA VAL VAL ARG GLU GLU THR PHE ALA PRO SEQRES 32 A 512 ILE LEU TYR VAL LEU THR TYR ARG ASP LEU ASP GLU ALA SEQRES 33 A 512 ILE ARG LEU ASN ASN GLU VAL PRO GLN GLY LEU SER ALA SEQRES 34 A 512 GLY ILE PHE THR ALA ASP GLN SER GLU ALA GLU ARG PHE SEQRES 35 A 512 LEU ALA PRO ASP GLY ALA ASP CYS GLY ILE ALA ASN VAL SEQRES 36 A 512 ASN ILE GLY THR SER GLY ALA GLU ILE GLY GLY ALA PHE SEQRES 37 A 512 GLY GLY GLU LYS GLU THR GLY GLY GLY ARG GLU SER GLY SEQRES 38 A 512 SER ASP ALA TRP ARG ALA TYR MET ARG ARG ALA THR ASN SEQRES 39 A 512 THR VAL ASN TYR SER GLY ARG VAL THR LEU ALA GLN GLY SEQRES 40 A 512 VAL ASP PHE SER GLN SEQRES 1 B 512 MET VAL THR ALA ALA ILE SER GLY THR ASP GLU ILE ARG SEQRES 2 B 512 ALA ARG ALA GLU GLN ALA LEU THR ARG CYS GLY VAL ASP SEQRES 3 B 512 LEU THR ALA VAL LYS GLY ASP ALA LEU THR ALA ARG THR SEQRES 4 B 512 PRO LEU THR GLY ALA ASP LEU PHE GLY LEU ARG ALA GLN SEQRES 5 B 512 THR PRO GLU ASP VAL ASP ARG ALA VAL GLU ALA ALA HIS SEQRES 6 B 512 THR ALA PHE LEU THR TRP ARG THR THR PRO ALA PRO VAL SEQRES 7 B 512 ARG GLY ALA LEU VAL LYS ARG PHE GLY GLU LEU LEU THR SEQRES 8 B 512 GLU HIS LYS GLN ASP LEU ALA ASP LEU VAL THR ILE GLU SEQRES 9 B 512 ALA GLY LYS ILE ARG SER GLU ALA LEU GLY GLU VAL GLN SEQRES 10 B 512 GLU MET ILE ASP ILE CYS ASP PHE ALA VAL GLY LEU SER SEQRES 11 B 512 ARG GLN LEU TYR GLY ARG THR MET PRO THR GLU ARG PRO SEQRES 12 B 512 GLY HIS ARG LEU MET GLU THR TRP HIS PRO LEU GLY VAL SEQRES 13 B 512 VAL GLY VAL ILE SER ALA PHE ASN PHE PRO VAL ALA VAL SEQRES 14 B 512 TRP ALA TRP ASN ALA ALA VAL ALA LEU VAL CYS GLY ASP SEQRES 15 B 512 THR VAL VAL TRP LYS PRO SER GLU LEU THR PRO LEU THR SEQRES 16 B 512 ALA LEU ALA CYS ALA ALA LEU LEU ASP LEU ALA ILE ALA SEQRES 17 B 512 ASP ALA GLY ALA PRO LYS GLY LEU ASN GLN VAL VAL VAL SEQRES 18 B 512 GLY ALA ALA ASP VAL GLY GLU ARG LEU VAL ASP SER PRO SEQRES 19 B 512 ARG VAL PRO LEU VAL SER ALA THR GLY SER THR ARG MET SEQRES 20 B 512 GLY ARG ALA VAL GLY PRO ARG VAL ALA ALA ARG PHE GLY SEQRES 21 B 512 ARG THR ILE LEU GLU LEU GLY GLY ASN ASN ALA ALA VAL SEQRES 22 B 512 VAL THR PRO SER ALA ASP LEU ASP LEU THR VAL ASN ALA SEQRES 23 B 512 ALA VAL PHE ALA ALA ALA GLY THR ALA GLY GLN ARG CYS SEQRES 24 B 512 THR THR LEU ARG ARG LEU ILE VAL HIS GLU ASP ILE ALA SEQRES 25 B 512 ASP THR VAL VAL GLU ARG LEU THR ALA ALA PHE GLU ARG SEQRES 26 B 512 LEU PRO ILE GLY ASP PRO PHE GLN ASP THR THR LEU VAL SEQRES 27 B 512 GLY PRO LEU VAL ASN GLU ALA ALA PHE GLY ARG MET ARG SEQRES 28 B 512 GLU ALA VAL GLU ARG ALA THR ALA GLU GLY GLY THR LEU SEQRES 29 B 512 CYS ALA GLY GLY GLU ARG GLN PHE PRO ASP ALA ALA PRO SEQRES 30 B 512 GLY ALA TYR TYR VAL ARG PRO ALA LEU VAL ARG MET PRO SEQRES 31 B 512 ALA GLN THR ALA VAL VAL ARG GLU GLU THR PHE ALA PRO SEQRES 32 B 512 ILE LEU TYR VAL LEU THR TYR ARG ASP LEU ASP GLU ALA SEQRES 33 B 512 ILE ARG LEU ASN ASN GLU VAL PRO GLN GLY LEU SER ALA SEQRES 34 B 512 GLY ILE PHE THR ALA ASP GLN SER GLU ALA GLU ARG PHE SEQRES 35 B 512 LEU ALA PRO ASP GLY ALA ASP CYS GLY ILE ALA ASN VAL SEQRES 36 B 512 ASN ILE GLY THR SER GLY ALA GLU ILE GLY GLY ALA PHE SEQRES 37 B 512 GLY GLY GLU LYS GLU THR GLY GLY GLY ARG GLU SER GLY SEQRES 38 B 512 SER ASP ALA TRP ARG ALA TYR MET ARG ARG ALA THR ASN SEQRES 39 B 512 THR VAL ASN TYR SER GLY ARG VAL THR LEU ALA GLN GLY SEQRES 40 B 512 VAL ASP PHE SER GLN HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HET GOL A 706 6 HET GOL A 707 6 HET ACT A 708 4 HET GOL B 601 6 HET SO4 B 602 5 HET SO4 B 603 5 HET SO4 B 604 5 HET GOL B 605 6 HET ACT B 606 4 HET ACT B 607 4 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 8(O4 S 2-) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 10 ACT 3(C2 H3 O2 1-) FORMUL 18 HOH *708(H2 O) HELIX 1 AA1 GLY A 8 CYS A 23 1 16 HELIX 2 AA2 ASP A 26 VAL A 30 1 5 HELIX 3 AA3 THR A 53 ARG A 72 1 20 HELIX 4 AA4 PRO A 75 HIS A 93 1 19 HELIX 5 AA5 HIS A 93 GLY A 106 1 14 HELIX 6 AA6 ILE A 108 SER A 130 1 23 HELIX 7 AA7 VAL A 167 CYS A 180 1 14 HELIX 8 AA8 THR A 192 GLY A 211 1 20 HELIX 9 AA9 PRO A 213 GLY A 215 5 3 HELIX 10 AB1 ALA A 223 SER A 233 1 11 HELIX 11 AB2 ALA A 250 ARG A 258 1 9 HELIX 12 AB3 ASP A 279 GLY A 293 1 15 HELIX 13 AB4 THR A 294 GLN A 297 5 4 HELIX 14 AB5 GLU A 309 ARG A 325 1 17 HELIX 15 AB6 ASN A 343 GLU A 360 1 18 HELIX 16 AB7 THR A 393 GLU A 398 1 6 HELIX 17 AB8 ASP A 412 GLU A 422 1 11 HELIX 18 AB9 ASP A 435 ALA A 444 1 10 HELIX 19 AC1 ASP A 483 ALA A 487 5 5 HELIX 20 AC2 LEU A 504 VAL A 508 5 5 HELIX 21 AC3 GLY B 8 CYS B 23 1 16 HELIX 22 AC4 ASP B 26 VAL B 30 1 5 HELIX 23 AC5 THR B 53 ARG B 72 1 20 HELIX 24 AC6 PRO B 75 HIS B 93 1 19 HELIX 25 AC7 HIS B 93 GLY B 106 1 14 HELIX 26 AC8 ILE B 108 SER B 130 1 23 HELIX 27 AC9 VAL B 167 CYS B 180 1 14 HELIX 28 AD1 THR B 192 GLY B 211 1 20 HELIX 29 AD2 PRO B 213 GLY B 215 5 3 HELIX 30 AD3 ALA B 223 SER B 233 1 11 HELIX 31 AD4 ALA B 250 ARG B 258 1 9 HELIX 32 AD5 ASP B 279 GLY B 293 1 15 HELIX 33 AD6 THR B 294 GLN B 297 5 4 HELIX 34 AD7 ILE B 311 LEU B 326 1 16 HELIX 35 AD8 ASN B 343 GLU B 360 1 18 HELIX 36 AD9 PHE B 372 ALA B 376 5 5 HELIX 37 AE1 THR B 393 GLU B 398 1 6 HELIX 38 AE2 ASP B 412 GLU B 422 1 11 HELIX 39 AE3 ASP B 435 ALA B 444 1 10 HELIX 40 AE4 ASP B 483 ALA B 487 5 5 SHEET 1 AA1 2 LYS A 31 ARG A 38 0 SHEET 2 AA1 2 ASP A 45 LEU A 49 -1 O LEU A 46 N ALA A 37 SHEET 1 AA2 3 ARG A 136 MET A 138 0 SHEET 2 AA2 3 HIS A 145 PRO A 153 -1 O GLU A 149 N ARG A 136 SHEET 3 AA2 3 MET A 489 ASN A 497 -1 O ASN A 494 N MET A 148 SHEET 1 AA3 5 ASN A 217 VAL A 219 0 SHEET 2 AA3 5 THR A 183 LYS A 187 1 N TRP A 186 O GLN A 218 SHEET 3 AA3 5 VAL A 156 ILE A 160 1 N VAL A 157 O THR A 183 SHEET 4 AA3 5 LEU A 238 THR A 242 1 O SER A 240 N GLY A 158 SHEET 5 AA3 5 ARG A 261 GLU A 265 1 O ILE A 263 N ALA A 241 SHEET 1 AA4 7 THR A 363 ALA A 366 0 SHEET 2 AA4 7 ALA A 385 ARG A 388 -1 O LEU A 386 N CYS A 365 SHEET 3 AA4 7 ILE A 404 TYR A 410 1 O LEU A 405 N VAL A 387 SHEET 4 AA4 7 LEU A 302 HIS A 308 1 N VAL A 307 O LEU A 408 SHEET 5 AA4 7 ASN A 270 VAL A 274 1 N ALA A 272 O ILE A 306 SHEET 6 AA4 7 SER A 428 PHE A 432 1 O PHE A 432 N VAL A 273 SHEET 7 AA4 7 ILE A 452 VAL A 455 1 O ASN A 454 N ALA A 429 SHEET 1 AA5 2 GLN A 425 GLY A 426 0 SHEET 2 AA5 2 GLU A 471 LYS A 472 -1 O GLU A 471 N GLY A 426 SHEET 1 AA6 2 ALA A 467 PHE A 468 0 SHEET 2 AA6 2 GLU A 479 SER A 480 -1 O GLU A 479 N PHE A 468 SHEET 1 AA7 2 LYS B 31 ARG B 38 0 SHEET 2 AA7 2 ASP B 45 LEU B 49 -1 O LEU B 49 N LEU B 35 SHEET 1 AA8 3 ARG B 136 MET B 138 0 SHEET 2 AA8 3 HIS B 145 PRO B 153 -1 O GLU B 149 N ARG B 136 SHEET 3 AA8 3 MET B 489 ASN B 497 -1 O ASN B 494 N MET B 148 SHEET 1 AA9 5 ASN B 217 VAL B 219 0 SHEET 2 AA9 5 THR B 183 LYS B 187 1 N TRP B 186 O GLN B 218 SHEET 3 AA9 5 VAL B 156 ILE B 160 1 N VAL B 159 O LYS B 187 SHEET 4 AA9 5 LEU B 238 THR B 242 1 O SER B 240 N ILE B 160 SHEET 5 AA9 5 ARG B 261 GLU B 265 1 O ILE B 263 N ALA B 241 SHEET 1 AB1 7 THR B 363 ALA B 366 0 SHEET 2 AB1 7 ALA B 385 ARG B 388 -1 O LEU B 386 N CYS B 365 SHEET 3 AB1 7 ILE B 404 TYR B 410 1 O VAL B 407 N VAL B 387 SHEET 4 AB1 7 LEU B 302 HIS B 308 1 N VAL B 307 O LEU B 408 SHEET 5 AB1 7 ASN B 270 VAL B 274 1 N ALA B 272 O ILE B 306 SHEET 6 AB1 7 SER B 428 PHE B 432 1 O PHE B 432 N VAL B 273 SHEET 7 AB1 7 ILE B 452 VAL B 455 1 O ASN B 454 N ALA B 429 SHEET 1 AB2 2 GLN B 425 GLY B 426 0 SHEET 2 AB2 2 GLU B 471 LYS B 472 -1 O GLU B 471 N GLY B 426 SHEET 1 AB3 2 ALA B 467 PHE B 468 0 SHEET 2 AB3 2 GLU B 479 SER B 480 -1 O GLU B 479 N PHE B 468 SITE 1 AC1 10 ASP A 412 LEU A 413 ARG A 441 HOH A 856 SITE 2 AC1 10 HOH A 859 HOH A 862 HOH A 883 HOH A 889 SITE 3 AC1 10 HOH A 967 HOH A 992 SITE 1 AC2 3 THR A 393 ALA A 394 ARG A 397 SITE 1 AC3 4 VAL A 2 GLU A 369 GLN A 371 ARG A 383 SITE 1 AC4 1 ARG A 22 SITE 1 AC5 10 ILE A 6 GLY A 8 ARG A 501 THR A 503 SITE 2 AC5 10 LEU A 504 HOH A 828 HOH A 891 HOH A 893 SITE 3 AC5 10 HOH A 922 HOH A 963 SITE 1 AC6 6 GLU A 471 LYS A 472 HOH A 857 HOH A 917 SITE 2 AC6 6 LEU B 154 ARG B 490 SITE 1 AC7 5 SER A 277 ALA A 434 ASP A 435 ALA B 434 SITE 2 AC7 5 ASP B 435 SITE 1 AC8 8 ARG A 38 GLY A 43 ASN A 343 GLU A 344 SITE 2 AC8 8 HOH A 863 HOH A 958 HOH A1070 HOH A1074 SITE 1 AC9 2 VAL B 502 LEU B 504 SITE 1 AD1 9 ASP B 412 LEU B 413 ARG B 441 HOH B 718 SITE 2 AD1 9 HOH B 745 HOH B 807 HOH B 834 HOH B 842 SITE 3 AD1 9 HOH B 874 SITE 1 AD2 6 THR B 393 ALA B 394 ARG B 397 ARG B 418 SITE 2 AD2 6 HOH B 920 HOH B 942 SITE 1 AD3 4 GLU B 369 GLN B 371 ARG B 383 HOH B 755 SITE 1 AD4 5 ALA B 162 PHE B 163 SER B 189 GLU B 190 SITE 2 AD4 5 LEU B 191 SITE 1 AD5 3 THR B 409 ARG B 411 HOH B 833 SITE 1 AD6 4 PHE B 165 CYS B 299 THR B 300 HOH B 916 CRYST1 110.720 130.370 157.100 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009032 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006365 0.00000