HEADER OXIDOREDUCTASE 26-MAY-19 6RTT TITLE PIPERIDEINE-6-CARBOXYLATE DEHYDROGENASE FROM STREPTOMYCES CLAVULIGERUS TITLE 2 COMPLEXED WITH PICOLINIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEMIALDEHYDE DEHYDROGENASE PCD; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CLAVULIGERUS ATCC 27064; SOURCE 3 ORGANISM_TAXID: 443255; SOURCE 4 ATCC: 27064; SOURCE 5 GENE: PCD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET9A KEYWDS OXIDOREDUCTASE, ANTIBIOTIC BIOSYNTHESIS, STREPTOMYCES CLAVULIGERUS EXPDTA X-RAY DIFFRACTION AUTHOR D.HASSE,J.HUELSEMANN,G.CARLSSON,I.ANDERSSON REVDAT 2 24-JAN-24 6RTT 1 REMARK REVDAT 1 18-DEC-19 6RTT 0 JRNL AUTH D.HASSE,J.HULSEMANN,G.H.CARLSSON,K.VALEGARD,I.ANDERSSON JRNL TITL STRUCTURE AND MECHANISM OF PIPERIDEINE-6-CARBOXYLATE JRNL TITL 2 DEHYDROGENASE FROM STREPTOMYCES CLAVULIGERUS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 1107 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31793904 JRNL DOI 10.1107/S2059798319014852 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 128777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3300 - 5.1244 1.00 4551 239 0.1621 0.1683 REMARK 3 2 5.1244 - 4.0683 1.00 4378 231 0.1382 0.1467 REMARK 3 3 4.0683 - 3.5542 1.00 4384 230 0.1433 0.1527 REMARK 3 4 3.5542 - 3.2294 1.00 4354 230 0.1590 0.1794 REMARK 3 5 3.2294 - 2.9979 1.00 4335 228 0.1651 0.1969 REMARK 3 6 2.9979 - 2.8212 1.00 4329 228 0.1652 0.1843 REMARK 3 7 2.8212 - 2.6799 1.00 4307 226 0.1679 0.1747 REMARK 3 8 2.6799 - 2.5633 1.00 4320 228 0.1645 0.1977 REMARK 3 9 2.5633 - 2.4646 1.00 4300 226 0.1609 0.1869 REMARK 3 10 2.4646 - 2.3796 1.00 4273 225 0.1627 0.1925 REMARK 3 11 2.3796 - 2.3052 1.00 4307 226 0.1542 0.1837 REMARK 3 12 2.3052 - 2.2393 1.00 4290 226 0.1537 0.1765 REMARK 3 13 2.2393 - 2.1803 1.00 4266 225 0.1505 0.1752 REMARK 3 14 2.1803 - 2.1272 1.00 4267 224 0.1543 0.1683 REMARK 3 15 2.1272 - 2.0788 0.99 4293 226 0.1480 0.1810 REMARK 3 16 2.0788 - 2.0346 0.99 4240 223 0.1511 0.1791 REMARK 3 17 2.0346 - 1.9939 0.99 4288 226 0.1571 0.1978 REMARK 3 18 1.9939 - 1.9562 0.99 4267 225 0.1562 0.2026 REMARK 3 19 1.9562 - 1.9213 0.99 4256 224 0.1683 0.2013 REMARK 3 20 1.9213 - 1.8887 0.99 4229 222 0.1762 0.2110 REMARK 3 21 1.8887 - 1.8583 0.99 4220 222 0.1787 0.2062 REMARK 3 22 1.8583 - 1.8297 0.99 4278 226 0.1814 0.2204 REMARK 3 23 1.8297 - 1.8028 0.99 4256 224 0.1854 0.2185 REMARK 3 24 1.8028 - 1.7774 0.97 4117 216 0.1905 0.2248 REMARK 3 25 1.7774 - 1.7533 0.90 3858 203 0.2121 0.2488 REMARK 3 26 1.7533 - 1.7306 0.82 3522 186 0.2123 0.2096 REMARK 3 27 1.7306 - 1.7089 0.76 3238 170 0.2154 0.2712 REMARK 3 28 1.7089 - 1.6883 0.71 3028 160 0.2364 0.3055 REMARK 3 29 1.6883 - 1.6687 0.68 2895 152 0.2481 0.2876 REMARK 3 30 1.6687 - 1.6500 0.63 2692 142 0.2656 0.2946 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128777 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6RTR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 5, 2.2 M REMARK 280 AMMONIUM SULPHATE, 0.2 M LITHIUM ACETATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.82500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.82500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.41000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.03000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.41000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.03000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.82500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 55.41000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.03000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.82500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 55.41000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.03000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -110.82000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -78.82500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 906 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1025 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1002 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1054 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 THR A 3 REMARK 465 GLN A 512 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 505 REMARK 465 GLN B 506 REMARK 465 GLY B 507 REMARK 465 VAL B 508 REMARK 465 ASP B 509 REMARK 465 PHE B 510 REMARK 465 SER B 511 REMARK 465 GLN B 512 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 132 -83.68 -118.81 REMARK 500 LEU A 133 50.82 36.80 REMARK 500 ALA A 250 -74.44 -64.63 REMARK 500 PHE A 372 63.78 23.81 REMARK 500 LEU A 427 -70.59 -85.65 REMARK 500 LYS A 472 -134.62 57.97 REMARK 500 SER A 480 -101.57 74.78 REMARK 500 SER A 482 -137.47 46.32 REMARK 500 GLN B 132 -81.76 -118.93 REMARK 500 LEU B 133 51.87 37.07 REMARK 500 ALA B 223 -157.60 -89.75 REMARK 500 PHE B 372 63.04 27.77 REMARK 500 ALA B 376 84.42 -166.19 REMARK 500 LYS B 472 -134.18 58.25 REMARK 500 SER B 480 -102.86 74.97 REMARK 500 SER B 482 -134.59 45.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6PC A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6PC A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6PC A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6PC B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6PC B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6RTR RELATED DB: PDB REMARK 900 SAME PROTEIN, APO FORM REMARK 900 RELATED ID: 6RTS RELATED DB: PDB REMARK 900 RELATED ID: 6RTU RELATED DB: PDB DBREF 6RTT A 1 512 UNP O85725 O85725_STRC2 1 512 DBREF 6RTT B 1 512 UNP O85725 O85725_STRC2 1 512 SEQADV 6RTT THR A 140 UNP O85725 SER 140 ENGINEERED MUTATION SEQADV 6RTT THR A 503 UNP O85725 ALA 503 ENGINEERED MUTATION SEQADV 6RTT THR B 140 UNP O85725 SER 140 ENGINEERED MUTATION SEQADV 6RTT THR B 503 UNP O85725 ALA 503 ENGINEERED MUTATION SEQRES 1 A 512 MET VAL THR ALA ALA ILE SER GLY THR ASP GLU ILE ARG SEQRES 2 A 512 ALA ARG ALA GLU GLN ALA LEU THR ARG CYS GLY VAL ASP SEQRES 3 A 512 LEU THR ALA VAL LYS GLY ASP ALA LEU THR ALA ARG THR SEQRES 4 A 512 PRO LEU THR GLY ALA ASP LEU PHE GLY LEU ARG ALA GLN SEQRES 5 A 512 THR PRO GLU ASP VAL ASP ARG ALA VAL GLU ALA ALA HIS SEQRES 6 A 512 THR ALA PHE LEU THR TRP ARG THR THR PRO ALA PRO VAL SEQRES 7 A 512 ARG GLY ALA LEU VAL LYS ARG PHE GLY GLU LEU LEU THR SEQRES 8 A 512 GLU HIS LYS GLN ASP LEU ALA ASP LEU VAL THR ILE GLU SEQRES 9 A 512 ALA GLY LYS ILE ARG SER GLU ALA LEU GLY GLU VAL GLN SEQRES 10 A 512 GLU MET ILE ASP ILE CYS ASP PHE ALA VAL GLY LEU SER SEQRES 11 A 512 ARG GLN LEU TYR GLY ARG THR MET PRO THR GLU ARG PRO SEQRES 12 A 512 GLY HIS ARG LEU MET GLU THR TRP HIS PRO LEU GLY VAL SEQRES 13 A 512 VAL GLY VAL ILE SER ALA PHE ASN PHE PRO VAL ALA VAL SEQRES 14 A 512 TRP ALA TRP ASN ALA ALA VAL ALA LEU VAL CYS GLY ASP SEQRES 15 A 512 THR VAL VAL TRP LYS PRO SER GLU LEU THR PRO LEU THR SEQRES 16 A 512 ALA LEU ALA CYS ALA ALA LEU LEU ASP LEU ALA ILE ALA SEQRES 17 A 512 ASP ALA GLY ALA PRO LYS GLY LEU ASN GLN VAL VAL VAL SEQRES 18 A 512 GLY ALA ALA ASP VAL GLY GLU ARG LEU VAL ASP SER PRO SEQRES 19 A 512 ARG VAL PRO LEU VAL SER ALA THR GLY SER THR ARG MET SEQRES 20 A 512 GLY ARG ALA VAL GLY PRO ARG VAL ALA ALA ARG PHE GLY SEQRES 21 A 512 ARG THR ILE LEU GLU LEU GLY GLY ASN ASN ALA ALA VAL SEQRES 22 A 512 VAL THR PRO SER ALA ASP LEU ASP LEU THR VAL ASN ALA SEQRES 23 A 512 ALA VAL PHE ALA ALA ALA GLY THR ALA GLY GLN ARG CYS SEQRES 24 A 512 THR THR LEU ARG ARG LEU ILE VAL HIS GLU ASP ILE ALA SEQRES 25 A 512 ASP THR VAL VAL GLU ARG LEU THR ALA ALA PHE GLU ARG SEQRES 26 A 512 LEU PRO ILE GLY ASP PRO PHE GLN ASP THR THR LEU VAL SEQRES 27 A 512 GLY PRO LEU VAL ASN GLU ALA ALA PHE GLY ARG MET ARG SEQRES 28 A 512 GLU ALA VAL GLU ARG ALA THR ALA GLU GLY GLY THR LEU SEQRES 29 A 512 CYS ALA GLY GLY GLU ARG GLN PHE PRO ASP ALA ALA PRO SEQRES 30 A 512 GLY ALA TYR TYR VAL ARG PRO ALA LEU VAL ARG MET PRO SEQRES 31 A 512 ALA GLN THR ALA VAL VAL ARG GLU GLU THR PHE ALA PRO SEQRES 32 A 512 ILE LEU TYR VAL LEU THR TYR ARG ASP LEU ASP GLU ALA SEQRES 33 A 512 ILE ARG LEU ASN ASN GLU VAL PRO GLN GLY LEU SER ALA SEQRES 34 A 512 GLY ILE PHE THR ALA ASP GLN SER GLU ALA GLU ARG PHE SEQRES 35 A 512 LEU ALA PRO ASP GLY ALA ASP CYS GLY ILE ALA ASN VAL SEQRES 36 A 512 ASN ILE GLY THR SER GLY ALA GLU ILE GLY GLY ALA PHE SEQRES 37 A 512 GLY GLY GLU LYS GLU THR GLY GLY GLY ARG GLU SER GLY SEQRES 38 A 512 SER ASP ALA TRP ARG ALA TYR MET ARG ARG ALA THR ASN SEQRES 39 A 512 THR VAL ASN TYR SER GLY ARG VAL THR LEU ALA GLN GLY SEQRES 40 A 512 VAL ASP PHE SER GLN SEQRES 1 B 512 MET VAL THR ALA ALA ILE SER GLY THR ASP GLU ILE ARG SEQRES 2 B 512 ALA ARG ALA GLU GLN ALA LEU THR ARG CYS GLY VAL ASP SEQRES 3 B 512 LEU THR ALA VAL LYS GLY ASP ALA LEU THR ALA ARG THR SEQRES 4 B 512 PRO LEU THR GLY ALA ASP LEU PHE GLY LEU ARG ALA GLN SEQRES 5 B 512 THR PRO GLU ASP VAL ASP ARG ALA VAL GLU ALA ALA HIS SEQRES 6 B 512 THR ALA PHE LEU THR TRP ARG THR THR PRO ALA PRO VAL SEQRES 7 B 512 ARG GLY ALA LEU VAL LYS ARG PHE GLY GLU LEU LEU THR SEQRES 8 B 512 GLU HIS LYS GLN ASP LEU ALA ASP LEU VAL THR ILE GLU SEQRES 9 B 512 ALA GLY LYS ILE ARG SER GLU ALA LEU GLY GLU VAL GLN SEQRES 10 B 512 GLU MET ILE ASP ILE CYS ASP PHE ALA VAL GLY LEU SER SEQRES 11 B 512 ARG GLN LEU TYR GLY ARG THR MET PRO THR GLU ARG PRO SEQRES 12 B 512 GLY HIS ARG LEU MET GLU THR TRP HIS PRO LEU GLY VAL SEQRES 13 B 512 VAL GLY VAL ILE SER ALA PHE ASN PHE PRO VAL ALA VAL SEQRES 14 B 512 TRP ALA TRP ASN ALA ALA VAL ALA LEU VAL CYS GLY ASP SEQRES 15 B 512 THR VAL VAL TRP LYS PRO SER GLU LEU THR PRO LEU THR SEQRES 16 B 512 ALA LEU ALA CYS ALA ALA LEU LEU ASP LEU ALA ILE ALA SEQRES 17 B 512 ASP ALA GLY ALA PRO LYS GLY LEU ASN GLN VAL VAL VAL SEQRES 18 B 512 GLY ALA ALA ASP VAL GLY GLU ARG LEU VAL ASP SER PRO SEQRES 19 B 512 ARG VAL PRO LEU VAL SER ALA THR GLY SER THR ARG MET SEQRES 20 B 512 GLY ARG ALA VAL GLY PRO ARG VAL ALA ALA ARG PHE GLY SEQRES 21 B 512 ARG THR ILE LEU GLU LEU GLY GLY ASN ASN ALA ALA VAL SEQRES 22 B 512 VAL THR PRO SER ALA ASP LEU ASP LEU THR VAL ASN ALA SEQRES 23 B 512 ALA VAL PHE ALA ALA ALA GLY THR ALA GLY GLN ARG CYS SEQRES 24 B 512 THR THR LEU ARG ARG LEU ILE VAL HIS GLU ASP ILE ALA SEQRES 25 B 512 ASP THR VAL VAL GLU ARG LEU THR ALA ALA PHE GLU ARG SEQRES 26 B 512 LEU PRO ILE GLY ASP PRO PHE GLN ASP THR THR LEU VAL SEQRES 27 B 512 GLY PRO LEU VAL ASN GLU ALA ALA PHE GLY ARG MET ARG SEQRES 28 B 512 GLU ALA VAL GLU ARG ALA THR ALA GLU GLY GLY THR LEU SEQRES 29 B 512 CYS ALA GLY GLY GLU ARG GLN PHE PRO ASP ALA ALA PRO SEQRES 30 B 512 GLY ALA TYR TYR VAL ARG PRO ALA LEU VAL ARG MET PRO SEQRES 31 B 512 ALA GLN THR ALA VAL VAL ARG GLU GLU THR PHE ALA PRO SEQRES 32 B 512 ILE LEU TYR VAL LEU THR TYR ARG ASP LEU ASP GLU ALA SEQRES 33 B 512 ILE ARG LEU ASN ASN GLU VAL PRO GLN GLY LEU SER ALA SEQRES 34 B 512 GLY ILE PHE THR ALA ASP GLN SER GLU ALA GLU ARG PHE SEQRES 35 B 512 LEU ALA PRO ASP GLY ALA ASP CYS GLY ILE ALA ASN VAL SEQRES 36 B 512 ASN ILE GLY THR SER GLY ALA GLU ILE GLY GLY ALA PHE SEQRES 37 B 512 GLY GLY GLU LYS GLU THR GLY GLY GLY ARG GLU SER GLY SEQRES 38 B 512 SER ASP ALA TRP ARG ALA TYR MET ARG ARG ALA THR ASN SEQRES 39 B 512 THR VAL ASN TYR SER GLY ARG VAL THR LEU ALA GLN GLY SEQRES 40 B 512 VAL ASP PHE SER GLN HET 6PC A 601 9 HET 6PC A 602 9 HET 6PC A 603 9 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET GOL A 608 6 HET 6PC B 601 9 HET 6PC B 602 9 HET SO4 B 603 5 HET SO4 B 604 5 HET SO4 B 605 5 HET GOL B 606 6 HETNAM 6PC PYRIDINE-2-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN 6PC PICOLINIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 6PC 5(C6 H5 N O2) FORMUL 6 SO4 7(O4 S 2-) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 17 HOH *736(H2 O) HELIX 1 AA1 GLY A 8 CYS A 23 1 16 HELIX 2 AA2 ASP A 26 VAL A 30 1 5 HELIX 3 AA3 THR A 53 ARG A 72 1 20 HELIX 4 AA4 PRO A 75 HIS A 93 1 19 HELIX 5 AA5 HIS A 93 GLY A 106 1 14 HELIX 6 AA6 ILE A 108 SER A 130 1 23 HELIX 7 AA7 VAL A 167 CYS A 180 1 14 HELIX 8 AA8 THR A 192 GLY A 211 1 20 HELIX 9 AA9 PRO A 213 GLY A 215 5 3 HELIX 10 AB1 ALA A 223 SER A 233 1 11 HELIX 11 AB2 THR A 245 ARG A 258 1 14 HELIX 12 AB3 ASP A 279 GLY A 293 1 15 HELIX 13 AB4 THR A 294 GLN A 297 5 4 HELIX 14 AB5 ILE A 311 ARG A 325 1 15 HELIX 15 AB6 ASN A 343 GLU A 360 1 18 HELIX 16 AB7 THR A 393 GLU A 398 1 6 HELIX 17 AB8 ASP A 412 GLU A 422 1 11 HELIX 18 AB9 ASP A 435 ALA A 444 1 10 HELIX 19 AC1 GLU A 471 GLY A 475 5 5 HELIX 20 AC2 ASP A 483 ALA A 487 5 5 HELIX 21 AC3 LEU A 504 VAL A 508 5 5 HELIX 22 AC4 GLY B 8 CYS B 23 1 16 HELIX 23 AC5 ASP B 26 VAL B 30 1 5 HELIX 24 AC6 THR B 53 ARG B 72 1 20 HELIX 25 AC7 PRO B 75 HIS B 93 1 19 HELIX 26 AC8 HIS B 93 GLY B 106 1 14 HELIX 27 AC9 ILE B 108 SER B 130 1 23 HELIX 28 AD1 VAL B 167 CYS B 180 1 14 HELIX 29 AD2 THR B 192 GLY B 211 1 20 HELIX 30 AD3 PRO B 213 GLY B 215 5 3 HELIX 31 AD4 ALA B 223 ASP B 232 1 10 HELIX 32 AD5 THR B 245 ARG B 258 1 14 HELIX 33 AD6 ASP B 279 GLY B 293 1 15 HELIX 34 AD7 THR B 294 GLN B 297 5 4 HELIX 35 AD8 ILE B 311 LEU B 326 1 16 HELIX 36 AD9 ASN B 343 GLU B 360 1 18 HELIX 37 AE1 PHE B 372 ALA B 376 5 5 HELIX 38 AE2 THR B 393 GLU B 398 1 6 HELIX 39 AE3 ASP B 412 GLU B 422 1 11 HELIX 40 AE4 ASP B 435 ALA B 444 1 10 HELIX 41 AE5 ASP B 483 ALA B 487 5 5 SHEET 1 AA1 2 LYS A 31 ARG A 38 0 SHEET 2 AA1 2 ASP A 45 LEU A 49 -1 O LEU A 46 N ALA A 37 SHEET 1 AA2 3 ARG A 136 MET A 138 0 SHEET 2 AA2 3 HIS A 145 PRO A 153 -1 O GLU A 149 N ARG A 136 SHEET 3 AA2 3 MET A 489 ASN A 497 -1 O VAL A 496 N ARG A 146 SHEET 1 AA3 5 ASN A 217 VAL A 219 0 SHEET 2 AA3 5 THR A 183 LYS A 187 1 N TRP A 186 O GLN A 218 SHEET 3 AA3 5 VAL A 156 ILE A 160 1 N VAL A 159 O LYS A 187 SHEET 4 AA3 5 LEU A 238 THR A 242 1 O SER A 240 N GLY A 158 SHEET 5 AA3 5 ARG A 261 GLU A 265 1 O ILE A 263 N ALA A 241 SHEET 1 AA4 7 THR A 363 ALA A 366 0 SHEET 2 AA4 7 ALA A 385 ARG A 388 -1 O LEU A 386 N CYS A 365 SHEET 3 AA4 7 ILE A 404 TYR A 410 1 O VAL A 407 N VAL A 387 SHEET 4 AA4 7 LEU A 302 HIS A 308 1 N VAL A 307 O LEU A 408 SHEET 5 AA4 7 ASN A 270 VAL A 274 1 N ALA A 272 O ILE A 306 SHEET 6 AA4 7 SER A 428 PHE A 432 1 O PHE A 432 N VAL A 273 SHEET 7 AA4 7 ILE A 452 VAL A 455 1 O ASN A 454 N ALA A 429 SHEET 1 AA5 2 ALA A 467 PHE A 468 0 SHEET 2 AA5 2 GLU A 479 SER A 480 -1 O GLU A 479 N PHE A 468 SHEET 1 AA6 2 LYS B 31 ARG B 38 0 SHEET 2 AA6 2 ASP B 45 LEU B 49 -1 O LEU B 46 N ALA B 37 SHEET 1 AA7 3 ARG B 136 MET B 138 0 SHEET 2 AA7 3 HIS B 145 PRO B 153 -1 O GLU B 149 N ARG B 136 SHEET 3 AA7 3 MET B 489 ASN B 497 -1 O ASN B 494 N MET B 148 SHEET 1 AA8 5 ASN B 217 VAL B 219 0 SHEET 2 AA8 5 THR B 183 LYS B 187 1 N TRP B 186 O GLN B 218 SHEET 3 AA8 5 VAL B 156 ILE B 160 1 N VAL B 159 O LYS B 187 SHEET 4 AA8 5 LEU B 238 THR B 242 1 O SER B 240 N GLY B 158 SHEET 5 AA8 5 ARG B 261 GLU B 265 1 O ILE B 263 N ALA B 241 SHEET 1 AA9 7 THR B 363 ALA B 366 0 SHEET 2 AA9 7 ALA B 385 ARG B 388 -1 O LEU B 386 N CYS B 365 SHEET 3 AA9 7 ILE B 404 TYR B 410 1 O VAL B 407 N VAL B 387 SHEET 4 AA9 7 LEU B 302 HIS B 308 1 N VAL B 307 O LEU B 408 SHEET 5 AA9 7 ASN B 270 VAL B 274 1 N ALA B 272 O ILE B 306 SHEET 6 AA9 7 SER B 428 PHE B 432 1 O PHE B 432 N VAL B 273 SHEET 7 AA9 7 ILE B 452 VAL B 455 1 O ASN B 454 N ALA B 429 SHEET 1 AB1 2 ARG B 370 GLN B 371 0 SHEET 2 AB1 2 TYR B 381 VAL B 382 -1 O TYR B 381 N GLN B 371 SHEET 1 AB2 2 GLN B 425 GLY B 426 0 SHEET 2 AB2 2 GLU B 471 LYS B 472 -1 O GLU B 471 N GLY B 426 SHEET 1 AB3 2 ALA B 467 PHE B 468 0 SHEET 2 AB3 2 GLU B 479 SER B 480 -1 O GLU B 479 N PHE B 468 SITE 1 AC1 9 PHE A 165 VAL A 169 TRP A 172 ARG A 298 SITE 2 AC1 9 CYS A 299 THR A 300 HOH A 870 HOH A 957 SITE 3 AC1 9 HOH A 987 SITE 1 AC2 6 ASN A 164 SER A 244 CYS A 299 GLU A 399 SITE 2 AC2 6 PHE A 401 HOH A 952 SITE 1 AC3 6 PRO A 424 LYS A 472 GLU A 473 HOH A 704 SITE 2 AC3 6 HOH A 751 HOH A 941 SITE 1 AC4 10 ASP A 412 LEU A 413 ARG A 441 HOH A 727 SITE 2 AC4 10 HOH A 731 HOH A 766 HOH A 793 HOH A 812 SITE 3 AC4 10 HOH A 824 HOH A 882 SITE 1 AC5 3 THR A 393 ALA A 394 ARG A 397 SITE 1 AC6 3 GLN A 371 ARG A 383 HOH A 708 SITE 1 AC7 9 ILE A 6 GLY A 8 ARG A 501 THR A 503 SITE 2 AC7 9 LEU A 504 HOH A 785 HOH A 805 HOH A 837 SITE 3 AC7 9 HOH A 839 SITE 1 AC8 6 GLU A 471 LYS A 472 HOH A 768 LEU B 154 SITE 2 AC8 6 ARG B 490 HOH B 793 SITE 1 AC9 9 GLU B 118 PHE B 165 VAL B 169 TRP B 172 SITE 2 AC9 9 ARG B 298 CYS B 299 THR B 300 HOH B 926 SITE 3 AC9 9 HOH B 971 SITE 1 AD1 5 PRO B 424 LYS B 472 HOH B 710 HOH B 797 SITE 2 AD1 5 HOH B 953 SITE 1 AD2 9 ASP B 412 LEU B 413 ARG B 441 HOH B 723 SITE 2 AD2 9 HOH B 740 HOH B 770 HOH B 784 HOH B 810 SITE 3 AD2 9 HOH B 847 SITE 1 AD3 6 THR B 393 ALA B 394 ARG B 397 ARG B 418 SITE 2 AD3 6 HOH B 802 HOH B 983 SITE 1 AD4 4 GLN B 371 ARG B 383 HOH B 709 HOH B 857 SITE 1 AD5 6 LEU A 154 ARG A 490 HOH A 762 GLU B 471 SITE 2 AD5 6 LYS B 472 HOH B 856 CRYST1 110.820 130.060 157.650 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009024 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006343 0.00000