HEADER TRANSFERASE 27-MAY-19 6RU6 TITLE CRYSTAL STRUCTURE OF CASEIN KINASE I DELTA (CK1D) IN COMPLEX WITH TITLE 2 MONOPHOSPHORYLATED P63 PAD1P PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE I ISOFORM DELTA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CKID,TAU-PROTEIN KINASE CSNK1D; COMPND 5 EC: 2.7.11.1,2.7.11.26; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TUMOR PROTEIN 63; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: P63,CHRONIC ULCERATIVE STOMATITIS PROTEIN,CUSP,KERATINOCYTE COMPND 11 TRANSCRIPTION FACTOR KET,TRANSFORMATION-RELATED PROTEIN 63,TP63,TUMOR COMPND 12 PROTEIN P73-LIKE,P73L,P40,P51; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSNK1D, HCKID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS CK1 DELTA, CK1DELTA, CSNK1D, TP63, P63, KINASE SUBSTRATE COMPLEX, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,M.TUPPI,J.GEBEL,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA, AUTHOR 2 V.DOTSCH,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 24-JAN-24 6RU6 1 REMARK REVDAT 3 30-SEP-20 6RU6 1 JRNL REVDAT 2 12-AUG-20 6RU6 1 JRNL LINK REVDAT 1 13-MAY-20 6RU6 0 JRNL AUTH J.GEBEL,M.TUPPI,A.CHAIKUAD,K.HOTTE,M.SCHRODER,L.SCHULZ, JRNL AUTH 2 F.LOHR,N.GUTFREUND,F.FINKE,E.HENRICH,J.MEZHYROVA,R.LEHNERT, JRNL AUTH 3 F.PAMPALONI,G.HUMMER,E.H.K.STELZER,S.KNAPP,V.DOTSCH JRNL TITL P63 USES A SWITCH-LIKE MECHANISM TO SET THE THRESHOLD FOR JRNL TITL 2 INDUCTION OF APOPTOSIS. JRNL REF NAT.CHEM.BIOL. V. 16 1078 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32719556 JRNL DOI 10.1038/S41589-020-0600-3 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 39925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2074 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2947 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4697 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.58000 REMARK 3 B22 (A**2) : -2.25000 REMARK 3 B33 (A**2) : 3.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.77000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4925 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4627 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6621 ; 1.278 ; 1.673 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10698 ; 1.166 ; 1.591 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 575 ; 7.448 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;31.449 ;20.543 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 895 ;15.311 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;20.683 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 603 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5368 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1134 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 294 B 3 294 8992 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): -41.0820 30.2640 29.0050 REMARK 3 T TENSOR REMARK 3 T11: 0.0564 T22: 0.1569 REMARK 3 T33: 0.1300 T12: -0.0078 REMARK 3 T13: 0.0468 T23: -0.0698 REMARK 3 L TENSOR REMARK 3 L11: 3.7448 L22: 0.6267 REMARK 3 L33: 2.6670 L12: -0.3619 REMARK 3 L13: -0.4525 L23: 1.0470 REMARK 3 S TENSOR REMARK 3 S11: -0.1672 S12: -0.5788 S13: 0.1829 REMARK 3 S21: 0.0768 S22: 0.0768 S23: -0.1130 REMARK 3 S31: 0.3143 S32: -0.1030 S33: 0.0904 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): -23.1190 17.0980 19.1020 REMARK 3 T TENSOR REMARK 3 T11: 0.0266 T22: 0.1151 REMARK 3 T33: 0.0782 T12: 0.0056 REMARK 3 T13: 0.0362 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.0461 L22: 0.3005 REMARK 3 L33: 0.1264 L12: -0.1318 REMARK 3 L13: 0.0920 L23: 0.0573 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: -0.0729 S13: 0.1220 REMARK 3 S21: -0.0016 S22: -0.0165 S23: -0.0079 REMARK 3 S31: 0.0232 S32: -0.0330 S33: 0.0380 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5140 -12.6010 16.1080 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: 0.0839 REMARK 3 T33: 0.1782 T12: -0.0098 REMARK 3 T13: 0.0382 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.9664 L22: 4.3969 REMARK 3 L33: 1.1148 L12: -0.0847 REMARK 3 L13: 0.7324 L23: -0.2645 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0569 S13: -0.0991 REMARK 3 S21: 0.3583 S22: -0.0663 S23: -0.0279 REMARK 3 S31: -0.0152 S32: -0.0663 S33: 0.0665 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 294 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1100 7.1140 18.4120 REMARK 3 T TENSOR REMARK 3 T11: 0.0238 T22: 0.0922 REMARK 3 T33: 0.0895 T12: -0.0007 REMARK 3 T13: 0.0428 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.7832 L22: 0.2546 REMARK 3 L33: 0.7009 L12: -0.1980 REMARK 3 L13: 0.0664 L23: 0.2108 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.0596 S13: -0.1684 REMARK 3 S21: 0.0254 S22: 0.0423 S23: 0.0201 REMARK 3 S31: 0.0371 S32: -0.0628 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 579 C 586 REMARK 3 ORIGIN FOR THE GROUP (A): -27.9850 10.0910 32.2660 REMARK 3 T TENSOR REMARK 3 T11: 0.0576 T22: 0.3732 REMARK 3 T33: 0.1918 T12: -0.0415 REMARK 3 T13: 0.0858 T23: -0.0955 REMARK 3 L TENSOR REMARK 3 L11: 4.6486 L22: 7.6756 REMARK 3 L33: 4.8554 L12: -5.9696 REMARK 3 L13: -4.7102 L23: 6.0543 REMARK 3 S TENSOR REMARK 3 S11: -0.2748 S12: -0.0750 S13: -0.0040 REMARK 3 S21: 0.3746 S22: 0.1424 S23: 0.0263 REMARK 3 S31: 0.3423 S32: -0.0365 S33: 0.1324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6RU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6-5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 49.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.78400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4HNF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG 3350, 0.1-0.2 M SODIUM REMARK 280 SULFATE AND 0.1 M CITRATE, PH 4.6-5.9, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.96850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.46200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.96850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.46200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 PHE A 20 REMARK 465 GLY A 21 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 PHE B 20 REMARK 465 GLY B 21 REMARK 465 ASP B 158 REMARK 465 ALA B 159 REMARK 465 ARG B 160 REMARK 465 THR B 161 REMARK 465 HIS B 162 REMARK 465 ASN B 172 REMARK 465 LEU B 173 REMARK 465 THR B 174 REMARK 465 VAL C 587 REMARK 465 SER C 588 REMARK 465 VAL C 589 REMARK 465 GLY C 590 REMARK 465 TYR C 591 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 163 CG CD OE1 NE2 REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 ARG C 579 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 -53.47 82.85 REMARK 500 ASN A 123 13.93 82.84 REMARK 500 ASP A 128 45.94 -148.07 REMARK 500 ASP A 149 73.53 69.53 REMARK 500 ASN B 7 -48.02 80.15 REMARK 500 GLU B 83 135.87 -39.06 REMARK 500 ASP B 128 47.39 -146.00 REMARK 500 ASP B 149 71.28 73.90 REMARK 500 GLU B 189 130.85 -37.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 143 OD1 REMARK 620 2 TYR A 286 O 97.9 REMARK 620 3 ASN A 291 OD1 152.4 82.7 REMARK 620 4 HOH A 415 O 80.0 138.3 81.4 REMARK 620 5 HOH A 475 O 119.9 108.0 85.4 108.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 DBREF 6RU6 A 1 294 UNP P48730 KC1D_HUMAN 1 294 DBREF 6RU6 B 1 294 UNP P48730 KC1D_HUMAN 1 294 DBREF 6RU6 C 579 591 UNP Q9H3D4 P63_HUMAN 618 630 SEQADV 6RU6 SER A -1 UNP P48730 EXPRESSION TAG SEQADV 6RU6 MET A 0 UNP P48730 EXPRESSION TAG SEQADV 6RU6 SER B -1 UNP P48730 EXPRESSION TAG SEQADV 6RU6 MET B 0 UNP P48730 EXPRESSION TAG SEQADV 6RU6 TYR C 591 UNP Q9H3D4 SER 630 CONFLICT SEQRES 1 A 296 SER MET MET GLU LEU ARG VAL GLY ASN ARG TYR ARG LEU SEQRES 2 A 296 GLY ARG LYS ILE GLY SER GLY SER PHE GLY ASP ILE TYR SEQRES 3 A 296 LEU GLY THR ASP ILE ALA ALA GLY GLU GLU VAL ALA ILE SEQRES 4 A 296 LYS LEU GLU CYS VAL LYS THR LYS HIS PRO GLN LEU HIS SEQRES 5 A 296 ILE GLU SER LYS ILE TYR LYS MET MET GLN GLY GLY VAL SEQRES 6 A 296 GLY ILE PRO THR ILE ARG TRP CYS GLY ALA GLU GLY ASP SEQRES 7 A 296 TYR ASN VAL MET VAL MET GLU LEU LEU GLY PRO SER LEU SEQRES 8 A 296 GLU ASP LEU PHE ASN PHE CYS SER ARG LYS PHE SER LEU SEQRES 9 A 296 LYS THR VAL LEU LEU LEU ALA ASP GLN MET ILE SER ARG SEQRES 10 A 296 ILE GLU TYR ILE HIS SER LYS ASN PHE ILE HIS ARG ASP SEQRES 11 A 296 VAL LYS PRO ASP ASN PHE LEU MET GLY LEU GLY LYS LYS SEQRES 12 A 296 GLY ASN LEU VAL TYR ILE ILE ASP PHE GLY LEU ALA LYS SEQRES 13 A 296 LYS TYR ARG ASP ALA ARG THR HIS GLN HIS ILE PRO TYR SEQRES 14 A 296 ARG GLU ASN LYS ASN LEU THR GLY THR ALA ARG TYR ALA SEQRES 15 A 296 SER ILE ASN THR HIS LEU GLY ILE GLU GLN SER ARG ARG SEQRES 16 A 296 ASP ASP LEU GLU SER LEU GLY TYR VAL LEU MET TYR PHE SEQRES 17 A 296 ASN LEU GLY SER LEU PRO TRP GLN GLY LEU LYS ALA ALA SEQRES 18 A 296 THR LYS ARG GLN LYS TYR GLU ARG ILE SER GLU LYS LYS SEQRES 19 A 296 MET SER THR PRO ILE GLU VAL LEU CYS LYS GLY TYR PRO SEQRES 20 A 296 SER GLU PHE ALA THR TYR LEU ASN PHE CYS ARG SER LEU SEQRES 21 A 296 ARG PHE ASP ASP LYS PRO ASP TYR SER TYR LEU ARG GLN SEQRES 22 A 296 LEU PHE ARG ASN LEU PHE HIS ARG GLN GLY PHE SER TYR SEQRES 23 A 296 ASP TYR VAL PHE ASP TRP ASN MET LEU LYS SEQRES 1 B 296 SER MET MET GLU LEU ARG VAL GLY ASN ARG TYR ARG LEU SEQRES 2 B 296 GLY ARG LYS ILE GLY SER GLY SER PHE GLY ASP ILE TYR SEQRES 3 B 296 LEU GLY THR ASP ILE ALA ALA GLY GLU GLU VAL ALA ILE SEQRES 4 B 296 LYS LEU GLU CYS VAL LYS THR LYS HIS PRO GLN LEU HIS SEQRES 5 B 296 ILE GLU SER LYS ILE TYR LYS MET MET GLN GLY GLY VAL SEQRES 6 B 296 GLY ILE PRO THR ILE ARG TRP CYS GLY ALA GLU GLY ASP SEQRES 7 B 296 TYR ASN VAL MET VAL MET GLU LEU LEU GLY PRO SER LEU SEQRES 8 B 296 GLU ASP LEU PHE ASN PHE CYS SER ARG LYS PHE SER LEU SEQRES 9 B 296 LYS THR VAL LEU LEU LEU ALA ASP GLN MET ILE SER ARG SEQRES 10 B 296 ILE GLU TYR ILE HIS SER LYS ASN PHE ILE HIS ARG ASP SEQRES 11 B 296 VAL LYS PRO ASP ASN PHE LEU MET GLY LEU GLY LYS LYS SEQRES 12 B 296 GLY ASN LEU VAL TYR ILE ILE ASP PHE GLY LEU ALA LYS SEQRES 13 B 296 LYS TYR ARG ASP ALA ARG THR HIS GLN HIS ILE PRO TYR SEQRES 14 B 296 ARG GLU ASN LYS ASN LEU THR GLY THR ALA ARG TYR ALA SEQRES 15 B 296 SER ILE ASN THR HIS LEU GLY ILE GLU GLN SER ARG ARG SEQRES 16 B 296 ASP ASP LEU GLU SER LEU GLY TYR VAL LEU MET TYR PHE SEQRES 17 B 296 ASN LEU GLY SER LEU PRO TRP GLN GLY LEU LYS ALA ALA SEQRES 18 B 296 THR LYS ARG GLN LYS TYR GLU ARG ILE SER GLU LYS LYS SEQRES 19 B 296 MET SER THR PRO ILE GLU VAL LEU CYS LYS GLY TYR PRO SEQRES 20 B 296 SER GLU PHE ALA THR TYR LEU ASN PHE CYS ARG SER LEU SEQRES 21 B 296 ARG PHE ASP ASP LYS PRO ASP TYR SER TYR LEU ARG GLN SEQRES 22 B 296 LEU PHE ARG ASN LEU PHE HIS ARG GLN GLY PHE SER TYR SEQRES 23 B 296 ASP TYR VAL PHE ASP TRP ASN MET LEU LYS SEQRES 1 C 13 ARG THR PRO SEP SER ALA SER THR VAL SER VAL GLY TYR MODRES 6RU6 SEP C 582 SER MODIFIED RESIDUE HET SEP C 582 10 HET ACP A 301 31 HET NA A 302 1 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET ACP B 301 31 HET SO4 B 302 5 HET EDO B 303 4 HETNAM SEP PHOSPHOSERINE HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN SEP PHOSPHONOSERINE HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SEP C3 H8 N O6 P FORMUL 4 ACP 2(C11 H18 N5 O12 P3) FORMUL 5 NA NA 1+ FORMUL 6 EDO 8(C2 H6 O2) FORMUL 14 SO4 O4 S 2- FORMUL 16 HOH *139(H2 O) HELIX 1 AA1 GLN A 48 GLN A 60 1 13 HELIX 2 AA2 SER A 88 CYS A 96 1 9 HELIX 3 AA3 SER A 101 LYS A 122 1 22 HELIX 4 AA4 LYS A 130 ASP A 132 5 3 HELIX 5 AA5 LEU A 138 GLY A 142 5 5 HELIX 6 AA6 SER A 181 LEU A 186 1 6 HELIX 7 AA7 SER A 191 GLY A 209 1 19 HELIX 8 AA8 LYS A 221 SER A 234 1 14 HELIX 9 AA9 PRO A 236 CYS A 241 1 6 HELIX 10 AB1 SER A 246 LEU A 258 1 13 HELIX 11 AB2 ASP A 265 GLN A 280 1 16 HELIX 12 AB3 PHE A 288 LEU A 293 5 6 HELIX 13 AB4 GLN B 48 GLN B 60 1 13 HELIX 14 AB5 SER B 88 CYS B 96 1 9 HELIX 15 AB6 SER B 101 LYS B 122 1 22 HELIX 16 AB7 LYS B 130 ASP B 132 5 3 HELIX 17 AB8 LEU B 138 GLY B 142 5 5 HELIX 18 AB9 THR B 176 ALA B 180 5 5 HELIX 19 AC1 SER B 181 LEU B 186 1 6 HELIX 20 AC2 SER B 191 GLY B 209 1 19 HELIX 21 AC3 LYS B 221 SER B 234 1 14 HELIX 22 AC4 PRO B 236 CYS B 241 1 6 HELIX 23 AC5 SER B 246 LEU B 258 1 13 HELIX 24 AC6 ASP B 265 GLN B 280 1 16 HELIX 25 AC7 PHE B 288 LEU B 293 5 6 SHEET 1 AA1 6 ARG A 4 VAL A 5 0 SHEET 2 AA1 6 TYR A 9 GLY A 16 -1 O TYR A 9 N VAL A 5 SHEET 3 AA1 6 ILE A 23 ASP A 28 -1 O LEU A 25 N GLY A 12 SHEET 4 AA1 6 GLU A 33 CYS A 41 -1 O GLU A 33 N ASP A 28 SHEET 5 AA1 6 TYR A 77 GLU A 83 -1 O ASN A 78 N GLU A 40 SHEET 6 AA1 6 ILE A 68 GLU A 74 -1 N TRP A 70 O VAL A 81 SHEET 1 AA2 2 PHE A 124 ILE A 125 0 SHEET 2 AA2 2 LYS A 154 LYS A 155 -1 O LYS A 154 N ILE A 125 SHEET 1 AA3 2 PHE A 134 MET A 136 0 SHEET 2 AA3 2 VAL A 145 ILE A 147 -1 O TYR A 146 N LEU A 135 SHEET 1 AA4 6 ARG B 4 VAL B 5 0 SHEET 2 AA4 6 TYR B 9 LYS B 14 -1 O TYR B 9 N VAL B 5 SHEET 3 AA4 6 ILE B 23 ASP B 28 -1 O LEU B 25 N GLY B 12 SHEET 4 AA4 6 GLU B 33 CYS B 41 -1 O GLU B 33 N ASP B 28 SHEET 5 AA4 6 TYR B 77 GLU B 83 -1 O ASN B 78 N GLU B 40 SHEET 6 AA4 6 ILE B 68 GLU B 74 -1 N ARG B 69 O VAL B 81 SHEET 1 AA5 2 PHE B 124 ILE B 125 0 SHEET 2 AA5 2 LYS B 154 LYS B 155 -1 O LYS B 154 N ILE B 125 SHEET 1 AA6 2 PHE B 134 MET B 136 0 SHEET 2 AA6 2 VAL B 145 ILE B 147 -1 O TYR B 146 N LEU B 135 LINK C PRO C 581 N SEP C 582 1555 1555 1.35 LINK C SEP C 582 N SER C 583 1555 1555 1.35 LINK OD1 ASN A 143 NA NA A 302 1555 1555 2.24 LINK O TYR A 286 NA NA A 302 1555 1555 2.38 LINK OD1 ASN A 291 NA NA A 302 1555 1555 2.65 LINK NA NA A 302 O HOH A 415 1555 1555 2.65 LINK NA NA A 302 O HOH A 475 1555 1555 2.53 SITE 1 AC1 12 SER A 17 ILE A 23 ALA A 36 LYS A 38 SITE 2 AC1 12 MET A 82 GLU A 83 LEU A 85 LEU A 135 SITE 3 AC1 12 ILE A 148 ASP A 149 HOH A 401 HOH A 424 SITE 1 AC2 6 ASN A 143 TYR A 286 PHE A 288 ASN A 291 SITE 2 AC2 6 HOH A 415 HOH A 475 SITE 1 AC3 6 MET A 136 GLY A 142 TRP A 290 HOH A 415 SITE 2 AC3 6 ILE B 29 GLY B 32 SITE 1 AC4 3 CYS A 96 ASP A 289 EDO A 305 SITE 1 AC5 6 PHE A 95 CYS A 96 SER A 97 EDO A 304 SITE 2 AC5 6 ARG B 4 ASN B 7 SITE 1 AC6 4 GLU A 117 ASP A 265 TYR A 266 SER A 267 SITE 1 AC7 5 ARG A 157 ARG A 192 ASP A 261 LYS A 263 SITE 2 AC7 5 HOH A 460 SITE 1 AC8 7 GLU A 117 HIS A 120 SER A 121 TYR A 156 SITE 2 AC8 7 ARG A 192 LYS A 263 TYR A 266 SITE 1 AC9 3 SER A 267 ARG A 270 GLN A 271 SITE 1 AD1 10 ASP B 22 ILE B 23 ALA B 36 MET B 82 SITE 2 AD1 10 GLU B 83 LEU B 85 LYS B 130 ASN B 133 SITE 3 AD1 10 LEU B 135 ASP B 149 SITE 1 AD2 3 ARG B 178 GLN B 214 GLY B 215 SITE 1 AD3 7 ILE A 29 GLY A 32 PRO B 87 MET B 136 SITE 2 AD3 7 GLY B 137 GLY B 142 TRP B 290 CRYST1 171.937 48.924 85.199 90.00 109.72 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005816 0.000000 0.002085 0.00000 SCALE2 0.000000 0.020440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012468 0.00000