HEADER OXIDOREDUCTASE 28-MAY-19 6RUJ TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH CONSENSUS ANKYRIN REPEAT TITLE 2 DOMAIN-(D)3-HYDROXY-LEU PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CONSENSUS ANKYRIN REPEAT DOMAIN-(D)3-HYDROXY-LEU; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS 2-OG-DEPENDENT DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 2 24-JAN-24 6RUJ 1 REMARK LINK REVDAT 1 08-JUL-20 6RUJ 0 JRNL AUTH H.CHOI,A.HARDY,T.M.LEISSING,R.CHOWDHURY,W.GE,M.MARKOULIDES, JRNL AUTH 2 J.S.SCOTTI,H.THORBJORNSRUD,Y.NAKASHIMA,D.KANG,S.HONG,J.LEE, JRNL AUTH 3 H.PARK,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL A HUMAN PROTEIN HYDROXYLASE THAT ACCEPTS D-RESIDUES JRNL REF COMMUN CHEM 2020 JRNL REFN ESSN 2399-3669 JRNL DOI 10.1038/S42004-020-0290-5 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.0566 - 4.6292 1.00 3193 157 0.1831 0.2282 REMARK 3 2 4.6292 - 3.6745 1.00 3030 145 0.1682 0.2154 REMARK 3 3 3.6745 - 3.2101 1.00 2953 154 0.2150 0.2475 REMARK 3 4 3.2101 - 2.9166 1.00 2962 153 0.2588 0.3306 REMARK 3 5 2.9166 - 2.7076 1.00 2927 142 0.2824 0.3659 REMARK 3 6 2.7076 - 2.5479 1.00 2914 140 0.3108 0.3564 REMARK 3 7 2.5479 - 2.4203 0.99 2900 157 0.3443 0.3771 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2978 REMARK 3 ANGLE : 1.236 4057 REMARK 3 CHIRALITY : 0.057 420 REMARK 3 PLANARITY : 0.008 537 REMARK 3 DIHEDRAL : 13.592 1739 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3809 32.1612 -23.5093 REMARK 3 T TENSOR REMARK 3 T11: 0.6095 T22: 0.9971 REMARK 3 T33: 1.0028 T12: 0.0498 REMARK 3 T13: -0.0518 T23: 0.3474 REMARK 3 L TENSOR REMARK 3 L11: 0.1739 L22: 1.1102 REMARK 3 L33: -0.0081 L12: 0.3893 REMARK 3 L13: 0.0019 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: -0.1568 S12: 0.9853 S13: 0.9560 REMARK 3 S21: -0.2280 S22: -0.2292 S23: -0.0923 REMARK 3 S31: -0.2152 S32: 0.1498 S33: 0.2305 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6893 26.2585 -4.5279 REMARK 3 T TENSOR REMARK 3 T11: 0.4918 T22: 0.8300 REMARK 3 T33: 0.6283 T12: 0.1203 REMARK 3 T13: 0.0982 T23: 0.1600 REMARK 3 L TENSOR REMARK 3 L11: 4.4237 L22: 3.7339 REMARK 3 L33: 2.4195 L12: -0.8316 REMARK 3 L13: 1.9536 L23: 0.0553 REMARK 3 S TENSOR REMARK 3 S11: -0.2777 S12: -0.8388 S13: 0.3836 REMARK 3 S21: 0.5135 S22: 0.2366 S23: 0.3118 REMARK 3 S31: -0.4145 S32: -0.4906 S33: 0.0177 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0051 18.0029 -8.2561 REMARK 3 T TENSOR REMARK 3 T11: 0.4249 T22: 0.5947 REMARK 3 T33: 0.4540 T12: 0.0184 REMARK 3 T13: 0.0249 T23: 0.1015 REMARK 3 L TENSOR REMARK 3 L11: 5.1705 L22: 1.9750 REMARK 3 L33: 2.1652 L12: -1.9184 REMARK 3 L13: 2.2628 L23: -1.0970 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: -0.2417 S13: 0.0720 REMARK 3 S21: 0.1225 S22: 0.1477 S23: 0.2494 REMARK 3 S31: -0.0296 S32: -0.2923 S33: -0.1782 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 790 THROUGH 796 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5022 -5.1950 -6.8427 REMARK 3 T TENSOR REMARK 3 T11: 0.8965 T22: 0.9536 REMARK 3 T33: 0.6821 T12: -0.0177 REMARK 3 T13: -0.2545 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 7.6761 L22: 5.2119 REMARK 3 L33: 6.2838 L12: 5.9223 REMARK 3 L13: 5.7518 L23: 5.5641 REMARK 3 S TENSOR REMARK 3 S11: 0.9550 S12: 0.8185 S13: -0.4543 REMARK 3 S21: 0.3788 S22: -0.7901 S23: 0.6438 REMARK 3 S31: 1.7875 S32: 2.3916 S33: -0.1682 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 797 THROUGH 804 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5936 9.9793 -3.8716 REMARK 3 T TENSOR REMARK 3 T11: 0.9933 T22: 1.0853 REMARK 3 T33: 1.2751 T12: -0.0594 REMARK 3 T13: -0.0126 T23: 0.2071 REMARK 3 L TENSOR REMARK 3 L11: 5.1327 L22: 8.9282 REMARK 3 L33: 4.8631 L12: 1.0653 REMARK 3 L13: 0.7701 L23: -1.3246 REMARK 3 S TENSOR REMARK 3 S11: 0.1731 S12: -0.8941 S13: -0.9057 REMARK 3 S21: 0.6213 S22: -0.5622 S23: 1.3924 REMARK 3 S31: 0.8417 S32: 0.1392 S33: 0.3242 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RUJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 73.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 2.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400, REMARK 280 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.63150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.20050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.20050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.81575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.20050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.20050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.44725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.20050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.20050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.81575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.20050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.20050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.44725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.63150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -201.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 4 OG1 CG2 REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 VAL A 9 CG1 CG2 REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 SER A 34 OG REMARK 470 ARG A 40 CD NE CZ NH1 NH2 REMARK 470 SER A 94 OG REMARK 470 SER A 96 OG REMARK 470 LYS A 99 NZ REMARK 470 MET A 108 CG SD CE REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 124 NZ REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LEU A 144 CG CD1 CD2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 225 OE1 OE2 REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 345 CD CE NZ REMARK 470 ASN A 349 CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 19 CD OE1 OE2 REMARK 480 GLU A 29 CD OE1 OE2 REMARK 480 LYS A 106 CD CE NZ REMARK 480 LYS A 131 NZ REMARK 480 GLN A 133 OE1 NE2 REMARK 480 GLN A 137 OE1 NE2 REMARK 480 LEU A 150 CD1 CD2 REMARK 480 LYS A 157 CD CE NZ REMARK 480 MET A 160 CE REMARK 480 LYS A 172 CD CE NZ REMARK 480 LYS A 176 CE NZ REMARK 480 ILE A 289 CD1 REMARK 480 LYS A 298 CE NZ REMARK 480 ILE A 306 CD1 REMARK 480 LYS A 311 CD CE NZ REMARK 480 ILE A 344 CD1 REMARK 480 LYS B 793 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C VAL B 802 H2 KJW B 803 1.09 REMARK 500 OE1 GLU A 53 HZ2 LYS A 176 1.33 REMARK 500 OH TYR A 103 H ARG A 117 1.40 REMARK 500 O HOH A 672 O HOH A 679 1.77 REMARK 500 O HOH A 624 O HOH A 660 2.04 REMARK 500 OE1 GLU A 53 NZ LYS A 176 2.11 REMARK 500 O HOH A 634 O HOH A 654 2.11 REMARK 500 O HOH A 656 O HOH A 677 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 679 O HOH A 681 7555 2.03 REMARK 500 O HOH A 672 O HOH A 681 7555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 238 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 23 25.37 -78.78 REMARK 500 ASP A 66 38.10 -142.75 REMARK 500 GLU A 202 33.85 -92.27 REMARK 500 ASP A 237 125.83 -33.12 REMARK 500 ARG A 238 -4.55 92.73 REMARK 500 ASN A 246 80.63 -155.25 REMARK 500 TYR A 276 -22.27 82.00 REMARK 500 ASN A 332 118.11 -166.52 REMARK 500 KJW B 803 -109.71 56.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 109.8 REMARK 620 3 HIS A 279 NE2 88.0 79.5 REMARK 620 4 OGA A 502 O2 162.8 85.9 102.3 REMARK 620 5 OGA A 502 O2' 83.5 166.6 99.6 81.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NR1 RELATED DB: PDB REMARK 900 FH ALLYL-GLY CONSENSUS ANKYRIN DBREF 6RUJ A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 DBREF 6RUJ B 790 804 PDB 6RUJ 6RUJ 790 804 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN SEQRES 1 B 15 GLU VAL VAL LYS LEU LEU LEU GLU HIS GLY ALA ASP VAL SEQRES 2 B 15 KJW ALA HET KJW B 803 21 HET ZN A 501 1 HET OGA A 502 13 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HETNAM KJW (D)3-HYDROXY-LEUCINE HETNAM ZN ZINC ION HETNAM OGA N-OXALYLGLYCINE HETNAM SO4 SULFATE ION FORMUL 2 KJW C6 H13 N O3 FORMUL 3 ZN ZN 2+ FORMUL 4 OGA C4 H5 N O5 FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *93(H2 O) HELIX 1 AA1 MET A 1 ALA A 10 1 10 HELIX 2 AA2 GLU A 19 LEU A 23 5 5 HELIX 3 AA3 ASP A 28 LEU A 32 5 5 HELIX 4 AA4 ASP A 49 ASN A 58 1 10 HELIX 5 AA5 VAL A 70 TRP A 76 5 7 HELIX 6 AA6 ASP A 77 ILE A 85 1 9 HELIX 7 AA7 ASP A 104 ALA A 109 5 6 HELIX 8 AA8 PHE A 125 ARG A 138 1 14 HELIX 9 AA9 GLY A 155 GLY A 164 1 10 HELIX 10 AB1 ASN A 166 ARG A 177 1 12 HELIX 11 AB2 PRO A 220 ASP A 222 5 3 HELIX 12 AB3 GLN A 223 TYR A 228 1 6 HELIX 13 AB4 PHE A 252 VAL A 258 5 7 HELIX 14 AB5 LYS A 311 GLY A 331 1 21 HELIX 15 AB6 ASN A 332 GLN A 334 5 3 HELIX 16 AB7 GLU A 335 LYS A 345 1 11 HELIX 17 AB8 VAL B 791 GLU B 797 1 7 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLY A 260 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210 SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189 SHEET 8 AA2 9 ASP A 89 ALA A 95 -1 N ALA A 95 O ARG A 143 SHEET 9 AA2 9 SER A 118 LYS A 124 -1 O ASN A 119 N SER A 94 SHEET 1 AA3 6 ARG A 44 LEU A 45 0 SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273 SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210 SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK C VAL B 802 N KJW B 803 1555 1555 1.33 LINK C KJW B 803 N ALA B 804 1555 1555 1.33 LINK NE2 HIS A 199 ZN ZN A 501 1555 1555 2.03 LINK OD2 ASP A 201 ZN ZN A 501 1555 1555 2.10 LINK NE2 HIS A 279 ZN ZN A 501 1555 1555 2.22 LINK ZN ZN A 501 O2 OGA A 502 1555 1555 2.32 LINK ZN ZN A 501 O2' OGA A 502 1555 1555 2.25 CISPEP 1 TYR A 308 PRO A 309 0 7.09 SITE 1 AC1 5 HIS A 199 ASP A 201 HIS A 279 OGA A 502 SITE 2 AC1 5 KJW B 803 SITE 1 AC2 13 TYR A 145 LEU A 188 THR A 196 HIS A 199 SITE 2 AC2 13 ASP A 201 ASN A 205 PHE A 207 LYS A 214 SITE 3 AC2 13 HIS A 279 ILE A 281 ASN A 294 TRP A 296 SITE 4 AC2 13 ZN A 501 SITE 1 AC3 4 ARG A 138 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC4 3 LYS A 311 ALA A 312 HOH A 617 SITE 1 AC5 3 ARG A 33 HIS A 98 ARG A 143 CRYST1 86.401 86.401 147.263 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011574 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011574 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006791 0.00000