HEADER PROTEIN BINDING 31-MAY-19 6RVG TITLE CO-SUBSTITUTED BETA-KEGGIN BOUND TO PROTEINASE K SOLVED BY MR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINASE K; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDOPEPTIDASE K,TRITIRACHIUM ALKALINE PROTEINASE; COMPND 5 EC: 3.4.21.64 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARENGYODONTIUM ALBUM; SOURCE 3 ORGANISM_TAXID: 37998 KEYWDS POLYOXOMETALATE, COMPLEX, BETA-KEGGIN, PROTEINASE K, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.BREIBECK,A.BIJELIC,A.ROMPEL REVDAT 5 09-OCT-24 6RVG 1 REMARK REVDAT 4 24-JAN-24 6RVG 1 LINK REVDAT 3 20-NOV-19 6RVG 1 LINK REVDAT 2 02-OCT-19 6RVG 1 JRNL REVDAT 1 18-SEP-19 6RVG 0 JRNL AUTH J.BREIBECK,A.BIJELIC,A.ROMPEL JRNL TITL TRANSITION METAL-SUBSTITUTED KEGGIN POLYOXOTUNGSTATES JRNL TITL 2 ENABLING COVALENT ATTACHMENT TO PROTEINASE K UPON JRNL TITL 3 CO-CRYSTALLIZATION. JRNL REF CHEM.COMMUN.(CAMB.) V. 55 11519 2019 JRNL REFN ESSN 1364-548X JRNL PMID 31490500 JRNL DOI 10.1039/C9CC05818D REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 181429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 9044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1814 - 3.4167 0.99 5802 296 0.2017 0.1971 REMARK 3 2 3.4167 - 2.7123 1.00 5790 300 0.1974 0.2188 REMARK 3 3 2.7123 - 2.3696 1.00 5830 297 0.1819 0.1857 REMARK 3 4 2.3696 - 2.1530 1.00 5833 307 0.1535 0.1799 REMARK 3 5 2.1530 - 1.9987 0.99 5742 307 0.1465 0.1585 REMARK 3 6 1.9987 - 1.8809 1.00 5785 302 0.1500 0.1869 REMARK 3 7 1.8809 - 1.7867 1.00 5852 309 0.1550 0.1714 REMARK 3 8 1.7867 - 1.7089 1.00 5833 305 0.1571 0.1742 REMARK 3 9 1.7089 - 1.6431 1.00 5823 304 0.1571 0.1686 REMARK 3 10 1.6431 - 1.5864 1.00 5785 307 0.1610 0.1975 REMARK 3 11 1.5864 - 1.5368 1.00 5813 307 0.1657 0.1731 REMARK 3 12 1.5368 - 1.4929 1.00 5813 307 0.1715 0.1900 REMARK 3 13 1.4929 - 1.4536 1.00 5800 299 0.1804 0.2195 REMARK 3 14 1.4536 - 1.4181 0.99 5810 312 0.1873 0.2076 REMARK 3 15 1.4181 - 1.3859 1.00 5782 302 0.1887 0.1783 REMARK 3 16 1.3859 - 1.3564 1.00 5740 299 0.1873 0.2002 REMARK 3 17 1.3564 - 1.3293 1.00 5890 307 0.1920 0.2134 REMARK 3 18 1.3293 - 1.3042 1.00 5790 301 0.1926 0.2025 REMARK 3 19 1.3042 - 1.2809 1.00 5812 309 0.1989 0.1930 REMARK 3 20 1.2809 - 1.2592 1.00 5794 308 0.2024 0.2119 REMARK 3 21 1.2592 - 1.2389 1.00 5834 308 0.2118 0.2291 REMARK 3 22 1.2389 - 1.2198 1.00 5814 302 0.2097 0.2233 REMARK 3 23 1.2198 - 1.2019 0.99 5775 304 0.2167 0.2367 REMARK 3 24 1.2019 - 1.1849 0.99 5749 305 0.2260 0.2443 REMARK 3 25 1.1849 - 1.1689 0.99 5767 307 0.2343 0.2568 REMARK 3 26 1.1689 - 1.1537 0.99 5762 301 0.2425 0.2605 REMARK 3 27 1.1537 - 1.1393 0.97 5688 305 0.2479 0.2682 REMARK 3 28 1.1393 - 1.1256 0.94 5518 284 0.2684 0.2530 REMARK 3 29 1.1256 - 1.1125 0.91 5257 268 0.2814 0.3088 REMARK 3 30 1.1125 - 1.1000 0.87 5102 275 0.2992 0.2985 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2378 REMARK 3 ANGLE : 1.328 3736 REMARK 3 CHIRALITY : 0.079 313 REMARK 3 PLANARITY : 0.007 372 REMARK 3 DIHEDRAL : 14.236 726 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 181436 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 32.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.17210 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1IC6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE (PH 4.5), 0.3 REMARK 280 -0.7 M AMMONIUM SULPHATE, 0.5 M BETAINE, 10 MM CO-SUBSTITUTED REMARK 280 BETA-KEGGIN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.83000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.91000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.24500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.91000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.41500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.91000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.91000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.24500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.91000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.91000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.41500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.83000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 517 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 276 O HOH A 407 1.55 REMARK 500 HZ2 LYS A 258 O HOH A 409 1.58 REMARK 500 O HOH A 431 O HOH A 598 1.92 REMARK 500 O HOH A 511 O HOH A 638 1.92 REMARK 500 O HOH A 624 O HOH A 682 1.93 REMARK 500 O HOH A 664 O HOH A 698 1.93 REMARK 500 O HOH A 422 O HOH A 690 1.94 REMARK 500 O HOH A 658 O HOH A 671 1.95 REMARK 500 O HOH A 699 O HOH A 708 1.96 REMARK 500 O HOH A 499 O HOH A 621 1.99 REMARK 500 O HOH A 416 O HOH A 686 1.99 REMARK 500 O HOH A 681 O HOH A 692 2.01 REMARK 500 O4 XCO A 301 O HOH A 401 2.01 REMARK 500 O HOH A 550 O HOH A 585 2.10 REMARK 500 O HOH A 486 O HOH A 692 2.10 REMARK 500 O HOH A 499 O HOH A 668 2.11 REMARK 500 O HOH A 515 O HOH A 716 2.17 REMARK 500 OD2 ASP A 207 O30 KCO A 304 2.17 REMARK 500 NH2 ARG A 64 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 432 O HOH A 432 8665 1.69 REMARK 500 O HOH A 657 O HOH A 679 6565 1.92 REMARK 500 O HOH A 448 O HOH A 461 8665 2.04 REMARK 500 OD2 ASP A 165 O29 XCO A 301 5645 2.07 REMARK 500 O HOH A 622 O HOH A 654 4565 2.07 REMARK 500 O HOH A 627 O HOH A 628 8665 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 -147.37 -168.91 REMARK 500 ASP A 207 60.69 61.15 REMARK 500 ASN A 270 75.85 -109.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 XCO A 303 W12 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 63 OG REMARK 620 2 XCO A 303 O12 50.3 REMARK 620 3 XCO A 303 O31 139.8 99.5 REMARK 620 4 XCO A 303 O32 116.8 105.3 94.6 REMARK 620 5 XCO A 303 O35 51.2 93.3 167.2 81.7 REMARK 620 6 XCO A 303 O36 74.4 98.1 87.1 155.9 91.5 REMARK 620 7 XCO A 303 O40 142.5 167.2 70.1 69.1 97.1 89.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 XCO A 301 CO1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 165 OD2 REMARK 620 2 XCO A 301 O29 65.8 REMARK 620 3 XCO A 301 O30 84.7 97.0 REMARK 620 4 XCO A 301 O34 107.3 83.3 166.8 REMARK 620 5 XCO A 301 O36 132.5 161.2 90.3 85.7 REMARK 620 6 XCO A 301 O39 129.1 73.1 71.6 95.9 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 KCO A 304 W12 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 207 OD1 REMARK 620 2 KCO A 304 O12 68.9 REMARK 620 3 KCO A 304 O31 81.5 103.2 REMARK 620 4 KCO A 304 O32 149.5 82.4 95.9 REMARK 620 5 KCO A 304 O35 106.0 91.1 165.6 83.8 REMARK 620 6 KCO A 304 O40 133.2 153.1 71.0 72.4 95.3 REMARK 620 7 ASP A 207 OD2 45.0 113.9 71.3 160.8 105.0 89.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 KCO A 304 CO1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 207 OD2 REMARK 620 2 KCO A 304 O29 157.7 REMARK 620 3 KCO A 304 O30 66.9 91.0 REMARK 620 4 KCO A 304 O34 111.4 89.0 163.5 REMARK 620 5 KCO A 304 O39 93.0 76.7 71.4 92.6 REMARK 620 6 HOH A 420 O 108.9 83.8 119.8 76.6 157.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 XCO A 302 W7 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 XCO A 301 O8 REMARK 620 2 XCO A 302 O20 105.4 REMARK 620 3 XCO A 302 O25 72.5 90.5 REMARK 620 4 XCO A 302 O26 127.7 82.2 159.6 REMARK 620 5 XCO A 302 O31 88.5 164.6 87.5 94.6 REMARK 620 6 XCO A 302 O40 152.6 88.6 84.1 76.8 76.0 REMARK 620 7 XCO A 302 O7 32.4 92.3 102.0 97.3 103.1 173.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 XCO A 303 W6 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 XCO A 301 O8 REMARK 620 2 XCO A 303 O19 74.2 REMARK 620 3 XCO A 303 O24 132.7 83.0 REMARK 620 4 XCO A 303 O25 63.8 88.8 157.3 REMARK 620 5 XCO A 303 O30 122.9 161.2 88.8 92.5 REMARK 620 6 XCO A 303 O39 139.8 83.0 74.6 83.5 78.5 REMARK 620 7 XCO A 303 O6 51.8 102.5 95.7 106.7 95.1 168.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 XCO A 301 W8 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 XCO A 303 O6 REMARK 620 2 XCO A 301 O21 126.8 REMARK 620 3 XCO A 301 O26 88.7 79.3 REMARK 620 4 XCO A 301 O27 107.5 98.1 160.9 REMARK 620 5 XCO A 301 O32 68.0 162.8 93.6 83.5 REMARK 620 6 XCO A 301 O40 135.5 89.6 72.4 88.7 73.3 REMARK 620 7 XCO A 301 O8 41.8 88.1 96.6 102.3 108.4 169.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 XCO A 301 W12 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 408 O REMARK 620 2 XCO A 301 O12 43.8 REMARK 620 3 XCO A 301 O31 119.1 98.9 REMARK 620 4 XCO A 301 O32 134.4 107.0 96.0 REMARK 620 5 XCO A 301 O35 69.2 93.6 167.4 82.3 REMARK 620 6 XCO A 301 O36 60.7 95.8 87.1 156.2 89.5 REMARK 620 7 XCO A 301 O40 143.4 170.6 72.3 71.4 95.4 87.2 REMARK 620 8 HOH A 411 O 113.5 70.4 53.7 63.6 134.2 133.4 101.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 XCO A 302 CO1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 452 O REMARK 620 2 XCO A 302 O29 101.2 REMARK 620 3 XCO A 302 O30 84.2 94.1 REMARK 620 4 XCO A 302 O34 107.5 86.6 168.0 REMARK 620 5 XCO A 302 O36 95.4 163.3 89.1 87.0 REMARK 620 6 XCO A 302 O39 156.5 75.0 73.1 95.5 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 XCO A 303 CO1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 452 O REMARK 620 2 XCO A 303 O29 86.1 REMARK 620 3 XCO A 303 O30 102.5 96.6 REMARK 620 4 XCO A 303 O34 90.9 86.6 166.4 REMARK 620 5 XCO A 303 O36 108.2 162.1 90.8 82.7 REMARK 620 6 XCO A 303 O39 162.1 77.2 73.5 94.5 89.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XCO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XCO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XCO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KCO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6RUG RELATED DB: PDB REMARK 900 RELATED ID: 6RUK RELATED DB: PDB REMARK 900 RELATED ID: 6RUH RELATED DB: PDB REMARK 900 RELATED ID: 6RUW RELATED DB: PDB REMARK 900 RELATED ID: 6RUN RELATED DB: PDB REMARK 900 RELATED ID: 6RVE RELATED DB: PDB DBREF 6RVG A 1 279 UNP P06873 PRTK_PARAQ 106 384 SEQADV 6RVG ASP A 207 UNP P06873 SER 312 CONFLICT SEQRES 1 A 279 ALA ALA GLN THR ASN ALA PRO TRP GLY LEU ALA ARG ILE SEQRES 2 A 279 SER SER THR SER PRO GLY THR SER THR TYR TYR TYR ASP SEQRES 3 A 279 GLU SER ALA GLY GLN GLY SER CYS VAL TYR VAL ILE ASP SEQRES 4 A 279 THR GLY ILE GLU ALA SER HIS PRO GLU PHE GLU GLY ARG SEQRES 5 A 279 ALA GLN MET VAL LYS THR TYR TYR TYR SER SER ARG ASP SEQRES 6 A 279 GLY ASN GLY HIS GLY THR HIS CYS ALA GLY THR VAL GLY SEQRES 7 A 279 SER ARG THR TYR GLY VAL ALA LYS LYS THR GLN LEU PHE SEQRES 8 A 279 GLY VAL LYS VAL LEU ASP ASP ASN GLY SER GLY GLN TYR SEQRES 9 A 279 SER THR ILE ILE ALA GLY MET ASP PHE VAL ALA SER ASP SEQRES 10 A 279 LYS ASN ASN ARG ASN CYS PRO LYS GLY VAL VAL ALA SER SEQRES 11 A 279 LEU SER LEU GLY GLY GLY TYR SER SER SER VAL ASN SER SEQRES 12 A 279 ALA ALA ALA ARG LEU GLN SER SER GLY VAL MET VAL ALA SEQRES 13 A 279 VAL ALA ALA GLY ASN ASN ASN ALA ASP ALA ARG ASN TYR SEQRES 14 A 279 SER PRO ALA SER GLU PRO SER VAL CYS THR VAL GLY ALA SEQRES 15 A 279 SER ASP ARG TYR ASP ARG ARG SER SER PHE SER ASN TYR SEQRES 16 A 279 GLY SER VAL LEU ASP ILE PHE GLY PRO GLY THR ASP ILE SEQRES 17 A 279 LEU SER THR TRP ILE GLY GLY SER THR ARG SER ILE SER SEQRES 18 A 279 GLY THR SER MET ALA THR PRO HIS VAL ALA GLY LEU ALA SEQRES 19 A 279 ALA TYR LEU MET THR LEU GLY LYS THR THR ALA ALA SER SEQRES 20 A 279 ALA CYS ARG TYR ILE ALA ASP THR ALA ASN LYS GLY ASP SEQRES 21 A 279 LEU SER ASN ILE PRO PHE GLY THR VAL ASN LEU LEU ALA SEQRES 22 A 279 TYR ASN ASN TYR GLN ALA HET XCO A 301 52 HET XCO A 302 52 HET XCO A 303 52 HET KCO A 304 51 HET SO4 A 305 5 HETNAM XCO CO-SUBSTITUTED BETA-KEGGIN HETNAM KCO CO-SUBSTITUTED BETA-KEGGIN HETNAM SO4 SULFATE ION FORMUL 2 XCO 3(CO O39 SI W11) FORMUL 5 KCO CO O38 SI W11 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *330(H2 O) HELIX 1 AA1 PRO A 7 SER A 14 1 8 HELIX 2 AA2 HIS A 46 GLU A 50 5 5 HELIX 3 AA3 GLY A 68 SER A 79 1 12 HELIX 4 AA4 GLN A 103 LYS A 118 1 16 HELIX 5 AA5 ASN A 119 ARG A 121 5 3 HELIX 6 AA6 SER A 138 SER A 151 1 14 HELIX 7 AA7 ASP A 165 ARG A 167 5 3 HELIX 8 AA8 GLY A 222 LEU A 240 1 19 HELIX 9 AA9 SER A 247 ALA A 256 1 10 SHEET 1 AA1 2 ALA A 2 GLN A 3 0 SHEET 2 AA1 2 TYR A 23 TYR A 24 -1 O TYR A 23 N GLN A 3 SHEET 1 AA2 7 ALA A 53 THR A 58 0 SHEET 2 AA2 7 GLN A 89 LYS A 94 1 O LYS A 94 N LYS A 57 SHEET 3 AA2 7 SER A 33 ASP A 39 1 N VAL A 35 O GLN A 89 SHEET 4 AA2 7 GLY A 126 LEU A 131 1 O SER A 130 N TYR A 36 SHEET 5 AA2 7 VAL A 153 ALA A 158 1 O MET A 154 N ALA A 129 SHEET 6 AA2 7 CYS A 178 SER A 183 1 O CYS A 178 N VAL A 157 SHEET 7 AA2 7 ILE A 201 PRO A 204 1 O ILE A 201 N GLY A 181 SHEET 1 AA3 2 GLY A 135 GLY A 136 0 SHEET 2 AA3 2 TYR A 169 SER A 170 -1 O SER A 170 N GLY A 135 SHEET 1 AA4 2 ILE A 208 TRP A 212 0 SHEET 2 AA4 2 SER A 216 ILE A 220 -1 O ILE A 220 N ILE A 208 SHEET 1 AA5 2 ASN A 257 LYS A 258 0 SHEET 2 AA5 2 LEU A 271 LEU A 272 -1 O LEU A 272 N ASN A 257 SSBOND 1 CYS A 34 CYS A 123 1555 1555 2.04 SSBOND 2 CYS A 178 CYS A 249 1555 1555 2.07 LINK OG BSER A 63 W12BXCO A 303 1555 1555 3.16 LINK OD2 ASP A 165 CO1 XCO A 301 1555 5645 1.84 LINK OD1 ASP A 207 W12 KCO A 304 1555 1555 2.63 LINK OD2 ASP A 207 CO1 KCO A 304 1555 1555 1.96 LINK OD2 ASP A 207 W12 KCO A 304 1555 1555 2.91 LINK O8 XCO A 301 W7 AXCO A 302 1555 1555 3.29 LINK O8 XCO A 301 W6 BXCO A 303 1555 1555 2.62 LINK W8 XCO A 301 O6 BXCO A 303 1555 1555 3.00 LINK W12 XCO A 301 O HOH A 408 1555 1555 3.23 LINK W12 XCO A 301 O HOH A 411 1555 1555 2.96 LINK CO1 AXCO A 302 O HOH A 452 1555 1555 2.29 LINK CO1 BXCO A 303 O HOH A 452 1555 1555 2.10 LINK CO1 KCO A 304 O HOH A 420 1555 1555 2.44 CISPEP 1 SER A 170 PRO A 171 0 1.82 SITE 1 AC1 19 ARG A 64 GLY A 66 ASP A 165 ARG A 167 SITE 2 AC1 19 TYR A 195 GLY A 196 ILE A 213 GLY A 214 SITE 3 AC1 19 LYS A 258 PRO A 265 PHE A 266 THR A 268 SITE 4 AC1 19 XCO A 302 XCO A 303 HOH A 401 HOH A 403 SITE 5 AC1 19 HOH A 408 HOH A 411 HOH A 419 SITE 1 AC2 17 GLU A 43 ALA A 44 SER A 45 MET A 55 SITE 2 AC2 17 SER A 62 SER A 63 ARG A 64 LYS A 258 SITE 3 AC2 17 GLY A 259 XCO A 301 XCO A 303 HOH A 410 SITE 4 AC2 17 HOH A 429 HOH A 430 HOH A 452 HOH A 512 SITE 5 AC2 17 HOH A 542 SITE 1 AC3 19 ILE A 42 GLU A 43 ALA A 44 SER A 45 SITE 2 AC3 19 MET A 55 SER A 62 SER A 63 ARG A 64 SITE 3 AC3 19 LYS A 258 GLY A 259 ASN A 270 XCO A 301 SITE 4 AC3 19 XCO A 302 HOH A 404 HOH A 410 HOH A 429 SITE 5 AC3 19 HOH A 430 HOH A 452 HOH A 542 SITE 1 AC4 16 SER A 140 ASP A 184 ARG A 185 TYR A 186 SITE 2 AC4 16 THR A 206 ASP A 207 THR A 244 ALA A 245 SITE 3 AC4 16 ALA A 246 HOH A 406 HOH A 412 HOH A 420 SITE 4 AC4 16 HOH A 453 HOH A 489 HOH A 565 HOH A 605 SITE 1 AC5 7 PRO A 7 TRP A 8 ARG A 185 HOH A 470 SITE 2 AC5 7 HOH A 475 HOH A 522 HOH A 588 CRYST1 67.820 67.820 101.660 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014745 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009837 0.00000