HEADER RNA BINDING PROTEIN 03-JUN-19 6RVZ TITLE CRYSTAL STRUCTURE OF ANGEL2, A 2',3'-CYCLIC PHOSPHATASE, IN COMPLEX TITLE 2 WITH ADENOSINE-2',3'-VANADATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ANGEL HOMOLOG 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SNA - EXPRESSION TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ANGEL2, KIAA0759L; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PHOSPHATASE, CCR4D, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KROUPOVA,M.JINEK REVDAT 2 12-AUG-20 6RVZ 1 JRNL LINK REVDAT 1 20-MAY-20 6RVZ 0 JRNL AUTH P.H.PINTO,A.KROUPOVA,A.SCHLEIFFER,K.MECHTLER,M.JINEK, JRNL AUTH 2 S.WEITZER,J.MARTINEZ JRNL TITL ANGEL2 IS A MEMBER OF THE CCR4 FAMILY OF DEADENYLASES WITH JRNL TITL 2 2',3'-CYCLIC PHOSPHATASE ACTIVITY. JRNL REF SCIENCE V. 369 524 2020 JRNL REFN ESSN 1095-9203 JRNL PMID 32732418 JRNL DOI 10.1126/SCIENCE.ABA9763 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1599 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2769 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.207 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2889 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2556 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3928 ; 0.934 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6006 ; 0.334 ; 1.551 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 6.621 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;35.868 ;22.215 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;13.605 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.309 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3166 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 535 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1381 ; 1.092 ; 3.206 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1380 ; 1.090 ; 3.204 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1718 ; 1.993 ; 4.789 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1719 ; 1.993 ; 4.792 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1508 ; 0.841 ; 3.310 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1508 ; 0.841 ; 3.310 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2210 ; 1.529 ; 4.927 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3293 ; 4.015 ;37.432 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3196 ; 3.692 ;36.722 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 6RVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31957 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: D_1292101550 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE, PH 7.5, 0.2 M REMARK 280 POTASSIUM-SODIUM TARTRATE, 20% (W/V) PEG 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.38500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.77000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.77000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.38500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 116 REMARK 465 ASN A 117 REMARK 465 ALA A 118 REMARK 465 GLU A 119 REMARK 465 PRO A 120 REMARK 465 SER A 121 REMARK 465 SER A 122 REMARK 465 LYS A 123 REMARK 465 ARG A 124 REMARK 465 ARG A 125 REMARK 465 LYS A 126 REMARK 465 HIS A 127 REMARK 465 GLN A 128 REMARK 465 CYS A 139 REMARK 465 SER A 140 REMARK 465 HIS A 141 REMARK 465 ASP A 142 REMARK 465 LYS A 143 REMARK 465 GLU A 144 REMARK 465 LYS A 145 REMARK 465 THR A 146 REMARK 465 LYS A 147 REMARK 465 ILE A 148 REMARK 465 LEU A 149 REMARK 465 GLY A 150 REMARK 465 ASP A 151 REMARK 465 LYS A 152 REMARK 465 ASN A 153 REMARK 465 VAL A 154 REMARK 465 ASP A 155 REMARK 465 PRO A 156 REMARK 465 LYS A 157 REMARK 465 CYS A 158 REMARK 465 GLU A 159 REMARK 465 ASP A 160 REMARK 465 SER A 161 REMARK 465 GLU A 162 REMARK 465 TYR A 298 REMARK 465 ALA A 299 REMARK 465 ALA A 300 REMARK 465 LYS A 416 REMARK 465 VAL A 417 REMARK 465 GLU A 418 REMARK 465 LYS A 419 REMARK 465 THR A 420 REMARK 465 ASP A 421 REMARK 465 SER A 422 REMARK 465 ASP A 423 REMARK 465 LEU A 424 REMARK 465 THR A 425 REMARK 465 GLN A 426 REMARK 465 THR A 427 REMARK 465 GLN A 428 REMARK 465 LEU A 429 REMARK 465 LYS A 430 REMARK 465 GLN A 431 REMARK 465 THR A 432 REMARK 465 GLU A 433 REMARK 465 VAL A 434 REMARK 465 LEU A 435 REMARK 465 VAL A 436 REMARK 465 THR A 437 REMARK 465 ALA A 438 REMARK 465 GLU A 439 REMARK 465 LYS A 440 REMARK 465 LEU A 441 REMARK 465 GLU A 486 REMARK 465 LYS A 487 REMARK 465 GLU A 488 REMARK 465 ASP A 489 REMARK 465 VAL A 490 REMARK 465 ALA A 491 REMARK 465 GLY A 492 REMARK 465 HIS A 493 REMARK 465 PRO A 494 REMARK 465 GLY A 495 REMARK 465 ALA A 496 REMARK 465 GLU A 497 REMARK 465 VAL A 498 REMARK 465 ALA A 499 REMARK 465 LEU A 500 REMARK 465 VAL A 501 REMARK 465 GLY A 502 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 175 107.79 70.56 REMARK 500 GLU A 229 -51.57 -128.68 REMARK 500 PRO A 251 59.71 -90.82 REMARK 500 ASN A 314 109.57 -36.88 REMARK 500 SER A 386 -7.29 84.83 REMARK 500 SER A 443 64.21 -100.86 REMARK 500 HIS A 457 -8.91 84.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 220 OE2 REMARK 620 2 KL2 A 601 O2' 113.3 REMARK 620 3 KL2 A 601 O3V 80.5 85.4 REMARK 620 4 HOH A 716 O 161.8 84.3 97.3 REMARK 620 5 HOH A 754 O 75.8 161.4 80.1 86.0 REMARK 620 6 HOH A 814 O 86.3 99.5 166.8 95.4 97.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 606 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 334 O REMARK 620 2 SER A 334 OG 70.5 REMARK 620 3 TRP A 519 O 22.7 48.0 REMARK 620 4 ASN A 522 OD1 23.7 46.8 3.7 REMARK 620 5 ADN A 603 O3' 25.4 45.6 3.2 5.7 REMARK 620 6 ADN A 603 O2' 26.4 44.3 3.7 4.2 2.5 REMARK 620 7 HOH A 930 O 22.3 48.8 2.4 6.1 3.2 5.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KL2 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6R6L RELATED DB: PDB REMARK 900 ENTRY FOR THE SAME PUBLICATION - APO STRUCTURE DBREF 6RVZ A 119 544 UNP Q5VTE6 ANGE2_HUMAN 119 544 SEQADV 6RVZ SER A 116 UNP Q5VTE6 EXPRESSION TAG SEQADV 6RVZ ASN A 117 UNP Q5VTE6 EXPRESSION TAG SEQADV 6RVZ ALA A 118 UNP Q5VTE6 EXPRESSION TAG SEQRES 1 A 429 SER ASN ALA GLU PRO SER SER LYS ARG ARG LYS HIS GLN SEQRES 2 A 429 GLY VAL ILE LYS ARG ASN TRP GLU TYR ILE CYS SER HIS SEQRES 3 A 429 ASP LYS GLU LYS THR LYS ILE LEU GLY ASP LYS ASN VAL SEQRES 4 A 429 ASP PRO LYS CYS GLU ASP SER GLU ASN LYS PHE ASP PHE SEQRES 5 A 429 SER VAL MET SER TYR ASN ILE LEU SER GLN ASP LEU LEU SEQRES 6 A 429 GLU ASP ASN SER HIS LEU TYR ARG HIS CYS ARG ARG PRO SEQRES 7 A 429 VAL LEU HIS TRP SER PHE ARG PHE PRO ASN ILE LEU LYS SEQRES 8 A 429 GLU ILE LYS HIS PHE ASP ALA ASP VAL LEU CYS LEU GLN SEQRES 9 A 429 GLU VAL GLN GLU ASP HIS TYR GLY ALA GLU ILE ARG PRO SEQRES 10 A 429 SER LEU GLU SER LEU GLY TYR HIS CYS GLU TYR LYS MET SEQRES 11 A 429 ARG THR GLY ARG LYS PRO ASP GLY CYS ALA ILE CYS PHE SEQRES 12 A 429 LYS HIS SER LYS PHE SER LEU LEU SER VAL ASN PRO VAL SEQRES 13 A 429 GLU PHE PHE ARG PRO ASP ILE SER LEU LEU ASP ARG ASP SEQRES 14 A 429 ASN VAL GLY LEU VAL LEU LEU LEU GLN PRO LYS ILE PRO SEQRES 15 A 429 TYR ALA ALA CYS PRO ALA ILE CYS VAL ALA ASN THR HIS SEQRES 16 A 429 LEU LEU TYR ASN PRO ARG ARG GLY ASP ILE LYS LEU THR SEQRES 17 A 429 GLN LEU ALA MET LEU LEU ALA GLU ILE SER SER VAL ALA SEQRES 18 A 429 HIS GLN LYS ASP GLY SER PHE CYS PRO ILE VAL MET CYS SEQRES 19 A 429 GLY ASP PHE ASN SER VAL PRO GLY SER PRO LEU TYR SER SEQRES 20 A 429 PHE ILE LYS GLU GLY LYS LEU ASN TYR GLU GLY LEU PRO SEQRES 21 A 429 ILE GLY LYS VAL SER GLY GLN GLU GLN SER SER ARG GLY SEQRES 22 A 429 GLN ARG ILE LEU SER ILE PRO ILE TRP PRO PRO ASN LEU SEQRES 23 A 429 GLY ILE SER GLN ASN CYS VAL TYR GLU VAL GLN GLN VAL SEQRES 24 A 429 PRO LYS VAL GLU LYS THR ASP SER ASP LEU THR GLN THR SEQRES 25 A 429 GLN LEU LYS GLN THR GLU VAL LEU VAL THR ALA GLU LYS SEQRES 26 A 429 LEU SER SER ASN LEU GLN HIS HIS PHE SER LEU SER SER SEQRES 27 A 429 VAL TYR SER HIS TYR PHE PRO ASP THR GLY ILE PRO GLU SEQRES 28 A 429 VAL THR THR CYS HIS SER ARG SER ALA ILE THR VAL ASP SEQRES 29 A 429 TYR ILE PHE TYR SER ALA GLU LYS GLU ASP VAL ALA GLY SEQRES 30 A 429 HIS PRO GLY ALA GLU VAL ALA LEU VAL GLY GLY LEU LYS SEQRES 31 A 429 LEU LEU ALA ARG LEU SER LEU LEU THR GLU GLN ASP LEU SEQRES 32 A 429 TRP THR VAL ASN GLY LEU PRO ASN GLU ASN ASN SER SER SEQRES 33 A 429 ASP HIS LEU PRO LEU LEU ALA LYS PHE ARG LEU GLU LEU HET KL2 A 601 36 HET MG A 602 1 HET ADN A 603 32 HET K A 604 1 HET K A 605 1 HET K A 606 1 HETNAM KL2 ADENOSINE-2',3'-VANADATE HETNAM MG MAGNESIUM ION HETNAM ADN ADENOSINE HETNAM K POTASSIUM ION HETSYN KL2 [(1~{R},5~{R},6~{R},8~{R})-8-(6-AMINOPURIN-9-YL)-3,3,3- HETSYN 2 KL2 TRIS(OXIDANYL)-2,4,7-TRIOXA-3$L^{5}- HETSYN 3 KL2 VANADABICYCLO[3.3.0]OCTAN-6-YL]METHANOL FORMUL 2 KL2 C10 H14 N5 O7 V FORMUL 3 MG MG 2+ FORMUL 4 ADN C10 H13 N5 O4 FORMUL 5 K 3(K 1+) FORMUL 8 HOH *323(H2 O) HELIX 1 AA1 SER A 176 ASN A 183 1 8 HELIX 2 AA2 SER A 184 ARG A 188 5 5 HELIX 3 AA3 ARG A 191 LEU A 195 5 5 HELIX 4 AA4 HIS A 196 ASP A 212 1 17 HELIX 5 AA5 GLU A 223 GLU A 229 1 7 HELIX 6 AA6 GLU A 229 LEU A 237 1 9 HELIX 7 AA7 ARG A 317 HIS A 337 1 21 HELIX 8 AA8 SER A 358 GLY A 367 1 10 HELIX 9 AA9 PRO A 375 VAL A 379 5 5 HELIX 10 AB1 PRO A 398 GLY A 402 5 5 HELIX 11 AB2 THR A 514 VAL A 521 1 8 SHEET 1 AA1 7 TRP A 135 TYR A 137 0 SHEET 2 AA1 7 LYS A 505 LEU A 510 -1 O ARG A 509 N GLU A 136 SHEET 3 AA1 7 LEU A 536 GLU A 543 -1 O LYS A 539 N LEU A 507 SHEET 4 AA1 7 LYS A 164 ASN A 173 -1 N PHE A 167 O PHE A 540 SHEET 5 AA1 7 VAL A 215 GLN A 222 1 O CYS A 217 N MET A 170 SHEET 6 AA1 7 ASP A 252 LYS A 259 -1 O CYS A 257 N LEU A 216 SHEET 7 AA1 7 TYR A 239 MET A 245 -1 N HIS A 240 O PHE A 258 SHEET 1 AA2 6 PHE A 263 GLU A 272 0 SHEET 2 AA2 6 VAL A 286 PRO A 294 -1 O GLN A 293 N SER A 264 SHEET 3 AA2 6 ILE A 304 HIS A 310 -1 O ILE A 304 N LEU A 292 SHEET 4 AA2 6 ILE A 346 ASP A 351 1 O CYS A 349 N ALA A 307 SHEET 5 AA2 6 ASP A 479 SER A 484 -1 O PHE A 482 N MET A 348 SHEET 6 AA2 6 LEU A 451 SER A 453 -1 N SER A 452 O TYR A 483 SHEET 1 AA3 2 LYS A 368 ASN A 370 0 SHEET 2 AA3 2 ASN A 444 GLN A 446 -1 O LEU A 445 N LEU A 369 SHEET 1 AA4 2 THR A 469 CYS A 470 0 SHEET 2 AA4 2 ALA A 475 ILE A 476 -1 O ILE A 476 N THR A 469 LINK OE2 GLU A 220 MG MG A 602 1555 1555 2.15 LINK O SER A 334 K K A 606 1555 4455 2.78 LINK OG SER A 334 K K A 606 1555 4455 3.11 LINK O TRP A 519 K K A 606 1555 1555 2.47 LINK OD1 ASN A 522 K K A 606 1555 1555 3.01 LINK O2' KL2 A 601 MG MG A 602 1555 1555 2.23 LINK O3V KL2 A 601 MG MG A 602 1555 1555 2.01 LINK O5' KL2 A 601 K K A 605 1555 1555 2.94 LINK MG MG A 602 O HOH A 716 1555 1555 2.09 LINK MG MG A 602 O HOH A 754 1555 1555 2.17 LINK MG MG A 602 O HOH A 814 1555 1555 1.99 LINK O3' ADN A 603 K K A 606 1555 1555 2.77 LINK O2' ADN A 603 K K A 606 1555 1555 2.69 LINK K K A 604 O HOH A 813 1555 1555 2.93 LINK K K A 606 O HOH A 930 1555 1555 2.52 CISPEP 1 ILE A 394 PRO A 395 0 -3.98 CISPEP 2 LEU A 524 PRO A 525 0 -11.26 SITE 1 AC1 22 ASN A 173 LEU A 179 ASN A 183 LEU A 186 SITE 2 AC1 22 GLU A 220 ARG A 246 LEU A 265 HIS A 310 SITE 3 AC1 22 TYR A 313 ASP A 351 ASN A 353 HIS A 533 SITE 4 AC1 22 MG A 602 K A 605 HOH A 716 HOH A 754 SITE 5 AC1 22 HOH A 787 HOH A 788 HOH A 791 HOH A 855 SITE 6 AC1 22 HOH A 871 HOH A 926 SITE 1 AC2 5 GLU A 220 KL2 A 601 HOH A 716 HOH A 754 SITE 2 AC2 5 HOH A 814 SITE 1 AC3 13 SER A 334 HIS A 337 LYS A 339 SER A 472 SITE 2 AC3 13 TRP A 519 K A 606 HOH A 748 HOH A 755 SITE 3 AC3 13 HOH A 786 HOH A 796 HOH A 818 HOH A 888 SITE 4 AC3 13 HOH A 930 SITE 1 AC4 4 LYS A 244 ARG A 316 ARG A 390 HOH A 813 SITE 1 AC5 2 ARG A 246 KL2 A 601 SITE 1 AC6 5 SER A 334 TRP A 519 ASN A 522 ADN A 603 SITE 2 AC6 5 HOH A 930 CRYST1 99.653 99.653 94.155 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010035 0.005794 0.000000 0.00000 SCALE2 0.000000 0.011587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010621 0.00000