HEADER HYDROLASE 08-JUN-19 6RXJ TITLE CRYSTAL STRUCTURE OF COBB WT IN COMPLEX WITH H4K16-ACETYL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACYLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: H4K16AC; COMPND 5 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: COBB, YCFY, B1120, JW1106; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 13 S288C); SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292 KEYWDS DEACYLASE, NAD-DEPENDENT, ACETYL, LYSINE, PTM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SPINCK,R.GASPER,H.NEUMANN REVDAT 6 23-OCT-24 6RXJ 1 REMARK REVDAT 5 24-JAN-24 6RXJ 1 REMARK REVDAT 4 15-NOV-23 6RXJ 1 ATOM REVDAT 3 27-SEP-23 6RXJ 1 REMARK REVDAT 2 01-JUL-20 6RXJ 1 JRNL REVDAT 1 15-APR-20 6RXJ 0 JRNL AUTH M.SPINCK,P.NEUMANN-STAUBITZ,M.ECKE,R.GASPER,H.NEUMANN JRNL TITL EVOLVED, SELECTIVE ERASERS OF DISTINCT LYSINE ACYLATIONS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 59 11142 2020 JRNL REFN ESSN 1521-3773 JRNL PMID 32187803 JRNL DOI 10.1002/ANIE.202002899 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 66801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3986 - 3.8557 1.00 4856 161 0.1573 0.1412 REMARK 3 2 3.8557 - 3.0606 1.00 4714 141 0.1648 0.2033 REMARK 3 3 3.0606 - 2.6737 1.00 4643 148 0.1766 0.2288 REMARK 3 4 2.6737 - 2.4293 1.00 4655 143 0.1655 0.1833 REMARK 3 5 2.4293 - 2.2552 1.00 4633 144 0.1671 0.1938 REMARK 3 6 2.2552 - 2.1222 1.00 4642 142 0.1681 0.2007 REMARK 3 7 2.1222 - 2.0159 1.00 4577 140 0.1746 0.1706 REMARK 3 8 2.0159 - 1.9282 1.00 4635 142 0.1800 0.2110 REMARK 3 9 1.9282 - 1.8539 1.00 4581 144 0.1880 0.2185 REMARK 3 10 1.8539 - 1.7900 1.00 4583 143 0.2104 0.2704 REMARK 3 11 1.7900 - 1.7340 1.00 4586 142 0.2317 0.2454 REMARK 3 12 1.7340 - 1.6844 1.00 4572 142 0.2526 0.2257 REMARK 3 13 1.6844 - 1.6401 1.00 4573 140 0.2827 0.2985 REMARK 3 14 1.6401 - 1.6001 1.00 4538 141 0.2991 0.3091 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3891 REMARK 3 ANGLE : 1.111 5274 REMARK 3 CHIRALITY : 0.043 566 REMARK 3 PLANARITY : 0.005 704 REMARK 3 DIHEDRAL : 15.244 1435 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2774 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JAN 31, 2018 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION JAN 31, 2018 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66812 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.379 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.17 REMARK 200 R MERGE FOR SHELL (I) : 1.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 1S5P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 0.03 M HCL, 22% REMARK 280 PEG3350, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.27000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.27000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 65.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.63000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 65.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.63000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.27000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 65.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.63000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 29.27000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 65.55000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.63000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 508 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 529 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 SER A -4 REMARK 465 GLN A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 ALA A 275 REMARK 465 GLY A 276 REMARK 465 SER A 277 REMARK 465 ILE A 278 REMARK 465 ALA A 279 REMARK 465 MET B -14 REMARK 465 GLY B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 SER B -4 REMARK 465 GLN B -3 REMARK 465 ASP B -2 REMARK 465 PRO B -1 REMARK 465 ALA B 275 REMARK 465 GLY B 276 REMARK 465 SER B 277 REMARK 465 ILE B 278 REMARK 465 ALA B 279 REMARK 465 LYS C 12 REMARK 465 LYS C 20 REMARK 465 ILE C 21 REMARK 465 LYS D 20 REMARK 465 ILE D 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 47 HG1 THR B 128 1.31 REMARK 500 OE2 GLU B 79 O HOH B 401 1.80 REMARK 500 O HOH B 511 O HOH B 524 1.83 REMARK 500 O HOH A 502 O HOH A 532 1.92 REMARK 500 O HOH A 500 O HOH A 521 2.04 REMARK 500 O HOH B 499 O HOH B 515 2.04 REMARK 500 OE2 GLU B 264 O HOH B 402 2.09 REMARK 500 O HOH A 526 O HOH C 103 2.11 REMARK 500 O HOH B 495 O HOH B 528 2.11 REMARK 500 O HOH B 537 O HOH D 101 2.14 REMARK 500 O HOH A 485 O HOH A 509 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 76 44.11 -141.27 REMARK 500 ALA B 76 43.78 -141.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALY D 16 10.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 155 SG REMARK 620 2 CYS A 174 SG 105.5 REMARK 620 3 CYS A 176 SG 100.7 106.1 REMARK 620 4 CYS A 177 SG 110.8 110.5 121.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 155 SG REMARK 620 2 CYS B 174 SG 104.4 REMARK 620 3 CYS B 176 SG 100.0 105.8 REMARK 620 4 CYS B 177 SG 110.6 111.3 122.8 REMARK 620 5 HOH B 520 O 70.3 68.7 166.3 70.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 DBREF 6RXJ A 40 254 UNP P75960 NPD_ECOLI 40 254 DBREF 6RXJ B 40 254 UNP P75960 NPD_ECOLI 40 254 DBREF 6RXJ C 12 21 UNP P02309 H4_YEAST 13 22 DBREF 6RXJ D 12 21 UNP P02309 H4_YEAST 13 22 SEQADV 6RXJ MET A -14 UNP P75960 INITIATING METHIONINE SEQADV 6RXJ GLY A -13 UNP P75960 EXPRESSION TAG SEQADV 6RXJ SER A -12 UNP P75960 EXPRESSION TAG SEQADV 6RXJ SER A -11 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS A -10 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS A -9 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS A -8 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS A -7 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS A -6 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS A -5 UNP P75960 EXPRESSION TAG SEQADV 6RXJ SER A -4 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLN A -3 UNP P75960 EXPRESSION TAG SEQADV 6RXJ ASP A -2 UNP P75960 EXPRESSION TAG SEQADV 6RXJ PRO A -1 UNP P75960 EXPRESSION TAG SEQADV 6RXJ TYR A 255 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLY A 256 UNP P75960 EXPRESSION TAG SEQADV 6RXJ PRO A 257 UNP P75960 EXPRESSION TAG SEQADV 6RXJ ALA A 258 UNP P75960 EXPRESSION TAG SEQADV 6RXJ SER A 259 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLN A 260 UNP P75960 EXPRESSION TAG SEQADV 6RXJ VAL A 261 UNP P75960 EXPRESSION TAG SEQADV 6RXJ VAL A 262 UNP P75960 EXPRESSION TAG SEQADV 6RXJ PRO A 263 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLU A 264 UNP P75960 EXPRESSION TAG SEQADV 6RXJ PHE A 265 UNP P75960 EXPRESSION TAG SEQADV 6RXJ VAL A 266 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLU A 267 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LYS A 268 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LEU A 269 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LEU A 270 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LYS A 271 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLY A 272 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LEU A 273 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LYS A 274 UNP P75960 EXPRESSION TAG SEQADV 6RXJ ALA A 275 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLY A 276 UNP P75960 EXPRESSION TAG SEQADV 6RXJ SER A 277 UNP P75960 EXPRESSION TAG SEQADV 6RXJ ILE A 278 UNP P75960 EXPRESSION TAG SEQADV 6RXJ ALA A 279 UNP P75960 EXPRESSION TAG SEQADV 6RXJ MET B -14 UNP P75960 INITIATING METHIONINE SEQADV 6RXJ GLY B -13 UNP P75960 EXPRESSION TAG SEQADV 6RXJ SER B -12 UNP P75960 EXPRESSION TAG SEQADV 6RXJ SER B -11 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS B -10 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS B -9 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS B -8 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS B -7 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS B -6 UNP P75960 EXPRESSION TAG SEQADV 6RXJ HIS B -5 UNP P75960 EXPRESSION TAG SEQADV 6RXJ SER B -4 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLN B -3 UNP P75960 EXPRESSION TAG SEQADV 6RXJ ASP B -2 UNP P75960 EXPRESSION TAG SEQADV 6RXJ PRO B -1 UNP P75960 EXPRESSION TAG SEQADV 6RXJ TYR B 255 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLY B 256 UNP P75960 EXPRESSION TAG SEQADV 6RXJ PRO B 257 UNP P75960 EXPRESSION TAG SEQADV 6RXJ ALA B 258 UNP P75960 EXPRESSION TAG SEQADV 6RXJ SER B 259 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLN B 260 UNP P75960 EXPRESSION TAG SEQADV 6RXJ VAL B 261 UNP P75960 EXPRESSION TAG SEQADV 6RXJ VAL B 262 UNP P75960 EXPRESSION TAG SEQADV 6RXJ PRO B 263 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLU B 264 UNP P75960 EXPRESSION TAG SEQADV 6RXJ PHE B 265 UNP P75960 EXPRESSION TAG SEQADV 6RXJ VAL B 266 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLU B 267 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LYS B 268 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LEU B 269 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LEU B 270 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LYS B 271 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLY B 272 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LEU B 273 UNP P75960 EXPRESSION TAG SEQADV 6RXJ LYS B 274 UNP P75960 EXPRESSION TAG SEQADV 6RXJ ALA B 275 UNP P75960 EXPRESSION TAG SEQADV 6RXJ GLY B 276 UNP P75960 EXPRESSION TAG SEQADV 6RXJ SER B 277 UNP P75960 EXPRESSION TAG SEQADV 6RXJ ILE B 278 UNP P75960 EXPRESSION TAG SEQADV 6RXJ ALA B 279 UNP P75960 EXPRESSION TAG SEQRES 1 A 254 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 254 PRO LYS PRO ARG VAL LEU VAL LEU THR GLY ALA GLY ILE SEQRES 3 A 254 SER ALA GLU SER GLY ILE ARG THR PHE ARG ALA ALA ASP SEQRES 4 A 254 GLY LEU TRP GLU GLU HIS ARG VAL GLU ASP VAL ALA THR SEQRES 5 A 254 PRO GLU GLY PHE ASP ARG ASP PRO GLU LEU VAL GLN ALA SEQRES 6 A 254 PHE TYR ASN ALA ARG ARG ARG GLN LEU GLN GLN PRO GLU SEQRES 7 A 254 ILE GLN PRO ASN ALA ALA HIS LEU ALA LEU ALA LYS LEU SEQRES 8 A 254 GLN ASP ALA LEU GLY ASP ARG PHE LEU LEU VAL THR GLN SEQRES 9 A 254 ASN ILE ASP ASN LEU HIS GLU ARG ALA GLY ASN THR ASN SEQRES 10 A 254 VAL ILE HIS MET HIS GLY GLU LEU LEU LYS VAL ARG CYS SEQRES 11 A 254 SER GLN SER GLY GLN VAL LEU ASP TRP THR GLY ASP VAL SEQRES 12 A 254 THR PRO GLU ASP LYS CYS HIS CYS CYS GLN PHE PRO ALA SEQRES 13 A 254 PRO LEU ARG PRO HIS VAL VAL TRP PHE GLY GLU MET PRO SEQRES 14 A 254 LEU GLY MET ASP GLU ILE TYR MET ALA LEU SER MET ALA SEQRES 15 A 254 ASP ILE PHE ILE ALA ILE GLY THR SER GLY HIS VAL TYR SEQRES 16 A 254 PRO ALA ALA GLY PHE VAL HIS GLU ALA LYS LEU HIS GLY SEQRES 17 A 254 ALA HIS THR VAL GLU LEU ASN LEU GLU PRO SER GLN VAL SEQRES 18 A 254 GLY ASN GLU PHE ALA GLU LYS TYR TYR GLY PRO ALA SER SEQRES 19 A 254 GLN VAL VAL PRO GLU PHE VAL GLU LYS LEU LEU LYS GLY SEQRES 20 A 254 LEU LYS ALA GLY SER ILE ALA SEQRES 1 B 254 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 254 PRO LYS PRO ARG VAL LEU VAL LEU THR GLY ALA GLY ILE SEQRES 3 B 254 SER ALA GLU SER GLY ILE ARG THR PHE ARG ALA ALA ASP SEQRES 4 B 254 GLY LEU TRP GLU GLU HIS ARG VAL GLU ASP VAL ALA THR SEQRES 5 B 254 PRO GLU GLY PHE ASP ARG ASP PRO GLU LEU VAL GLN ALA SEQRES 6 B 254 PHE TYR ASN ALA ARG ARG ARG GLN LEU GLN GLN PRO GLU SEQRES 7 B 254 ILE GLN PRO ASN ALA ALA HIS LEU ALA LEU ALA LYS LEU SEQRES 8 B 254 GLN ASP ALA LEU GLY ASP ARG PHE LEU LEU VAL THR GLN SEQRES 9 B 254 ASN ILE ASP ASN LEU HIS GLU ARG ALA GLY ASN THR ASN SEQRES 10 B 254 VAL ILE HIS MET HIS GLY GLU LEU LEU LYS VAL ARG CYS SEQRES 11 B 254 SER GLN SER GLY GLN VAL LEU ASP TRP THR GLY ASP VAL SEQRES 12 B 254 THR PRO GLU ASP LYS CYS HIS CYS CYS GLN PHE PRO ALA SEQRES 13 B 254 PRO LEU ARG PRO HIS VAL VAL TRP PHE GLY GLU MET PRO SEQRES 14 B 254 LEU GLY MET ASP GLU ILE TYR MET ALA LEU SER MET ALA SEQRES 15 B 254 ASP ILE PHE ILE ALA ILE GLY THR SER GLY HIS VAL TYR SEQRES 16 B 254 PRO ALA ALA GLY PHE VAL HIS GLU ALA LYS LEU HIS GLY SEQRES 17 B 254 ALA HIS THR VAL GLU LEU ASN LEU GLU PRO SER GLN VAL SEQRES 18 B 254 GLY ASN GLU PHE ALA GLU LYS TYR TYR GLY PRO ALA SER SEQRES 19 B 254 GLN VAL VAL PRO GLU PHE VAL GLU LYS LEU LEU LYS GLY SEQRES 20 B 254 LEU LYS ALA GLY SER ILE ALA SEQRES 1 C 10 LYS GLY GLY ALA ALY ARG HIS ARG LYS ILE SEQRES 1 D 10 LYS GLY GLY ALA ALY ARG HIS ARG LYS ILE MODRES 6RXJ ALY C 16 LYS MODIFIED RESIDUE MODRES 6RXJ ALY D 16 LYS MODIFIED RESIDUE HET ALY C 16 26 HET ALY D 16 26 HET ZN A 301 1 HET ZN B 301 1 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION FORMUL 3 ALY 2(C8 H16 N2 O3) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *290(H2 O) HELIX 1 AA1 ALA A 49 GLY A 56 5 8 HELIX 2 AA2 VAL A 72 ALA A 76 1 5 HELIX 3 AA3 THR A 77 ASP A 84 1 8 HELIX 4 AA4 ASP A 84 GLN A 100 1 17 HELIX 5 AA5 ASN A 107 GLY A 121 1 15 HELIX 6 AA6 ASN A 133 GLY A 139 1 7 HELIX 7 AA7 GLY A 196 ALA A 207 1 12 HELIX 8 AA8 PRO A 221 ALA A 223 5 3 HELIX 9 AA9 GLY A 224 HIS A 232 1 9 HELIX 10 AB1 VAL A 246 PHE A 250 5 5 HELIX 11 AB2 PRO A 257 LEU A 273 1 17 HELIX 12 AB3 ALA B 49 GLY B 56 5 8 HELIX 13 AB4 VAL B 72 ALA B 76 1 5 HELIX 14 AB5 THR B 77 ASP B 84 1 8 HELIX 15 AB6 ASP B 84 GLN B 100 1 17 HELIX 16 AB7 ASN B 107 GLY B 121 1 15 HELIX 17 AB8 ASN B 133 GLY B 139 1 7 HELIX 18 AB9 GLY B 196 ALA B 207 1 12 HELIX 19 AC1 PRO B 221 ALA B 223 5 3 HELIX 20 AC2 GLY B 224 HIS B 232 1 9 HELIX 21 AC3 VAL B 246 PHE B 250 5 5 HELIX 22 AC4 PRO B 257 LEU B 273 1 17 SHEET 1 AA1 6 ILE A 144 HIS A 145 0 SHEET 2 AA1 6 PHE A 124 THR A 128 1 N THR A 128 O ILE A 144 SHEET 3 AA1 6 VAL A 43 THR A 47 1 N VAL A 45 O VAL A 127 SHEET 4 AA1 6 ILE A 209 ILE A 213 1 O ILE A 213 N LEU A 46 SHEET 5 AA1 6 HIS A 235 ASN A 240 1 O VAL A 237 N ALA A 212 SHEET 6 AA1 6 GLU A 252 TYR A 255 1 O TYR A 254 N GLU A 238 SHEET 1 AA2 2 LEU A 66 TRP A 67 0 SHEET 2 AA2 2 HIS A 70 ARG A 71 -1 O HIS A 70 N TRP A 67 SHEET 1 AA3 3 VAL A 161 ASP A 163 0 SHEET 2 AA3 3 GLY A 148 CYS A 155 -1 N VAL A 153 O LEU A 162 SHEET 3 AA3 3 LEU A 183 VAL A 187 -1 O ARG A 184 N ARG A 154 SHEET 1 AA4 2 VAL A 219 TYR A 220 0 SHEET 2 AA4 2 ARG C 17 HIS C 18 -1 O ARG C 17 N TYR A 220 SHEET 1 AA5 6 ILE B 144 HIS B 145 0 SHEET 2 AA5 6 PHE B 124 THR B 128 1 N THR B 128 O ILE B 144 SHEET 3 AA5 6 VAL B 43 THR B 47 1 N VAL B 45 O VAL B 127 SHEET 4 AA5 6 ILE B 209 ILE B 213 1 O ILE B 213 N LEU B 46 SHEET 5 AA5 6 HIS B 235 ASN B 240 1 O VAL B 237 N ALA B 212 SHEET 6 AA5 6 GLU B 252 TYR B 255 1 O TYR B 254 N GLU B 238 SHEET 1 AA6 2 LEU B 66 TRP B 67 0 SHEET 2 AA6 2 HIS B 70 ARG B 71 -1 O HIS B 70 N TRP B 67 SHEET 1 AA7 3 VAL B 161 ASP B 163 0 SHEET 2 AA7 3 GLY B 148 CYS B 155 -1 N VAL B 153 O LEU B 162 SHEET 3 AA7 3 LEU B 183 VAL B 187 -1 O ARG B 184 N ARG B 154 SHEET 1 AA8 2 VAL B 219 TYR B 220 0 SHEET 2 AA8 2 ARG D 17 HIS D 18 -1 O ARG D 17 N TYR B 220 LINK C ALA C 15 N ALY C 16 1555 1555 1.33 LINK C ALY C 16 N ARG C 17 1555 1555 1.33 LINK C ALA D 15 N ALY D 16 1555 1555 1.33 LINK C ALY D 16 N ARG D 17 1555 1555 1.32 LINK SG CYS A 155 ZN ZN A 301 1555 1555 2.34 LINK SG CYS A 174 ZN ZN A 301 1555 1555 2.30 LINK SG CYS A 176 ZN ZN A 301 1555 1555 2.42 LINK SG CYS A 177 ZN ZN A 301 1555 1555 2.28 LINK SG CYS B 155 ZN ZN B 301 1555 1555 2.39 LINK SG CYS B 174 ZN ZN B 301 1555 1555 2.32 LINK SG CYS B 176 ZN ZN B 301 1555 1555 2.33 LINK SG CYS B 177 ZN ZN B 301 1555 1555 2.28 LINK ZN ZN B 301 O HOH B 520 1555 1555 1.90 CISPEP 1 TYR A 220 PRO A 221 0 1.03 CISPEP 2 TYR B 220 PRO B 221 0 1.16 SITE 1 AC1 4 CYS A 155 CYS A 174 CYS A 176 CYS A 177 SITE 1 AC2 5 CYS B 155 CYS B 174 CYS B 176 CYS B 177 SITE 2 AC2 5 HOH B 520 CRYST1 131.100 131.260 58.540 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017082 0.00000