HEADER HYDROLASE 08-JUN-19 6RXP TITLE CRYSTAL STRUCTURE OF COBB AC2 (A76G,I131C,V162A) IN COMPLEX WITH TITLE 2 H4K16-CROTONYL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACYLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: H4K16CR; COMPND 5 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HISTONE H4; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: COBB, YCFY, B1120, JW1106; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 13 S288C); SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292 KEYWDS DEACYLASE, NAD-DEPENDENT, HYDROLASE, CROTONYL EXPDTA X-RAY DIFFRACTION AUTHOR M.SPINCK,R.GASPER,H.NEUMANN REVDAT 3 24-JAN-24 6RXP 1 REMARK LINK REVDAT 2 01-JUL-20 6RXP 1 JRNL REVDAT 1 15-APR-20 6RXP 0 JRNL AUTH M.SPINCK,P.NEUMANN-STAUBITZ,M.ECKE,R.GASPER,H.NEUMANN JRNL TITL EVOLVED, SELECTIVE ERASERS OF DISTINCT LYSINE ACYLATIONS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 59 11142 2020 JRNL REFN ESSN 1521-3773 JRNL PMID 32187803 JRNL DOI 10.1002/ANIE.202002899 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.190 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9670 - 4.3374 1.00 3494 148 0.1747 0.2090 REMARK 3 2 4.3374 - 3.4430 1.00 3343 144 0.1671 0.1845 REMARK 3 3 3.4430 - 3.0079 1.00 3298 151 0.2004 0.2699 REMARK 3 4 3.0079 - 2.7329 1.00 3283 141 0.2102 0.2616 REMARK 3 5 2.7329 - 2.5370 1.00 3265 147 0.1964 0.2340 REMARK 3 6 2.5370 - 2.3875 1.00 3278 140 0.1972 0.2086 REMARK 3 7 2.3875 - 2.2679 1.00 3257 142 0.2046 0.2696 REMARK 3 8 2.2679 - 2.1692 1.00 3239 146 0.1940 0.2482 REMARK 3 9 2.1692 - 2.0857 1.00 3240 138 0.2030 0.2482 REMARK 3 10 2.0857 - 2.0137 1.00 3244 139 0.2204 0.2958 REMARK 3 11 2.0137 - 1.9507 1.00 3249 140 0.2220 0.2686 REMARK 3 12 1.9507 - 1.8950 1.00 3215 160 0.2386 0.3037 REMARK 3 13 1.8950 - 1.8451 1.00 3220 125 0.2543 0.2841 REMARK 3 14 1.8451 - 1.8001 1.00 3210 144 0.2850 0.3206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3922 REMARK 3 ANGLE : 1.116 5314 REMARK 3 CHIRALITY : 0.050 568 REMARK 3 PLANARITY : 0.006 707 REMARK 3 DIHEDRAL : 14.480 1450 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2024 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 58 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JAN 31, 2018 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION JAN 31, 2018 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47854 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.61 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.44 REMARK 200 R MERGE FOR SHELL (I) : 1.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: PDBID 1S5P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 0.03 M HCL, 23% REMARK 280 PEG3350, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.78000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.78000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 SER A -4 REMARK 465 GLN A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 LEU A 273 REMARK 465 LYS A 274 REMARK 465 ALA A 275 REMARK 465 GLY A 276 REMARK 465 SER A 277 REMARK 465 ILE A 278 REMARK 465 ALA A 279 REMARK 465 MET B -14 REMARK 465 GLY B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 SER B -4 REMARK 465 GLN B -3 REMARK 465 ASP B -2 REMARK 465 PRO B -1 REMARK 465 ALA B 275 REMARK 465 GLY B 276 REMARK 465 SER B 277 REMARK 465 ILE B 278 REMARK 465 ALA B 279 REMARK 465 LYS C 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 60 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 405 O HOH B 448 2.10 REMARK 500 O HOH B 405 O HOH B 538 2.15 REMARK 500 NZ LYS A 268 O HOH A 401 2.15 REMARK 500 O HOH A 407 O HOH A 438 2.15 REMARK 500 OE1 GLN A 260 O HOH A 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 408 O HOH B 491 4477 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 60 86.44 2.90 REMARK 500 ALA A 62 37.85 -71.96 REMARK 500 GLU B 68 -101.83 54.76 REMARK 500 TRP B 164 115.22 -160.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 541 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 155 SG REMARK 620 2 CYS A 174 SG 105.5 REMARK 620 3 CYS A 176 SG 100.2 107.8 REMARK 620 4 CYS A 177 SG 115.2 109.4 117.7 REMARK 620 5 HOH A 444 O 59.2 143.3 107.8 60.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 155 SG REMARK 620 2 CYS B 174 SG 106.8 REMARK 620 3 CYS B 176 SG 102.7 106.8 REMARK 620 4 CYS B 177 SG 107.9 110.5 121.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 DBREF 6RXP A 40 279 UNP P75960 NPD_ECOLI 40 279 DBREF 6RXP B 40 279 UNP P75960 NPD_ECOLI 40 279 DBREF 6RXP C 12 22 UNP P02309 H4_YEAST 13 23 DBREF 6RXP D 12 22 UNP P02309 H4_YEAST 13 23 SEQADV 6RXP MET A -14 UNP P75960 INITIATING METHIONINE SEQADV 6RXP GLY A -13 UNP P75960 EXPRESSION TAG SEQADV 6RXP SER A -12 UNP P75960 EXPRESSION TAG SEQADV 6RXP SER A -11 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS A -10 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS A -9 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS A -8 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS A -7 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS A -6 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS A -5 UNP P75960 EXPRESSION TAG SEQADV 6RXP SER A -4 UNP P75960 EXPRESSION TAG SEQADV 6RXP GLN A -3 UNP P75960 EXPRESSION TAG SEQADV 6RXP ASP A -2 UNP P75960 EXPRESSION TAG SEQADV 6RXP PRO A -1 UNP P75960 EXPRESSION TAG SEQADV 6RXP GLY A 76 UNP P75960 ALA 76 ENGINEERED MUTATION SEQADV 6RXP CYS A 131 UNP P75960 ILE 131 ENGINEERED MUTATION SEQADV 6RXP ALA A 161 UNP P75960 VAL 161 ENGINEERED MUTATION SEQADV 6RXP MET B -14 UNP P75960 INITIATING METHIONINE SEQADV 6RXP GLY B -13 UNP P75960 EXPRESSION TAG SEQADV 6RXP SER B -12 UNP P75960 EXPRESSION TAG SEQADV 6RXP SER B -11 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS B -10 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS B -9 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS B -8 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS B -7 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS B -6 UNP P75960 EXPRESSION TAG SEQADV 6RXP HIS B -5 UNP P75960 EXPRESSION TAG SEQADV 6RXP SER B -4 UNP P75960 EXPRESSION TAG SEQADV 6RXP GLN B -3 UNP P75960 EXPRESSION TAG SEQADV 6RXP ASP B -2 UNP P75960 EXPRESSION TAG SEQADV 6RXP PRO B -1 UNP P75960 EXPRESSION TAG SEQADV 6RXP GLY B 76 UNP P75960 ALA 76 ENGINEERED MUTATION SEQADV 6RXP CYS B 131 UNP P75960 ILE 131 ENGINEERED MUTATION SEQADV 6RXP ALA B 161 UNP P75960 VAL 161 ENGINEERED MUTATION SEQRES 1 A 254 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 254 PRO LYS PRO ARG VAL LEU VAL LEU THR GLY ALA GLY ILE SEQRES 3 A 254 SER ALA GLU SER GLY ILE ARG THR PHE ARG ALA ALA ASP SEQRES 4 A 254 GLY LEU TRP GLU GLU HIS ARG VAL GLU ASP VAL GLY THR SEQRES 5 A 254 PRO GLU GLY PHE ASP ARG ASP PRO GLU LEU VAL GLN ALA SEQRES 6 A 254 PHE TYR ASN ALA ARG ARG ARG GLN LEU GLN GLN PRO GLU SEQRES 7 A 254 ILE GLN PRO ASN ALA ALA HIS LEU ALA LEU ALA LYS LEU SEQRES 8 A 254 GLN ASP ALA LEU GLY ASP ARG PHE LEU LEU VAL THR GLN SEQRES 9 A 254 ASN CYS ASP ASN LEU HIS GLU ARG ALA GLY ASN THR ASN SEQRES 10 A 254 VAL ILE HIS MET HIS GLY GLU LEU LEU LYS VAL ARG CYS SEQRES 11 A 254 SER GLN SER GLY GLN ALA LEU ASP TRP THR GLY ASP VAL SEQRES 12 A 254 THR PRO GLU ASP LYS CYS HIS CYS CYS GLN PHE PRO ALA SEQRES 13 A 254 PRO LEU ARG PRO HIS VAL VAL TRP PHE GLY GLU MET PRO SEQRES 14 A 254 LEU GLY MET ASP GLU ILE TYR MET ALA LEU SER MET ALA SEQRES 15 A 254 ASP ILE PHE ILE ALA ILE GLY THR SER GLY HIS VAL TYR SEQRES 16 A 254 PRO ALA ALA GLY PHE VAL HIS GLU ALA LYS LEU HIS GLY SEQRES 17 A 254 ALA HIS THR VAL GLU LEU ASN LEU GLU PRO SER GLN VAL SEQRES 18 A 254 GLY ASN GLU PHE ALA GLU LYS TYR TYR GLY PRO ALA SER SEQRES 19 A 254 GLN VAL VAL PRO GLU PHE VAL GLU LYS LEU LEU LYS GLY SEQRES 20 A 254 LEU LYS ALA GLY SER ILE ALA SEQRES 1 B 254 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 254 PRO LYS PRO ARG VAL LEU VAL LEU THR GLY ALA GLY ILE SEQRES 3 B 254 SER ALA GLU SER GLY ILE ARG THR PHE ARG ALA ALA ASP SEQRES 4 B 254 GLY LEU TRP GLU GLU HIS ARG VAL GLU ASP VAL GLY THR SEQRES 5 B 254 PRO GLU GLY PHE ASP ARG ASP PRO GLU LEU VAL GLN ALA SEQRES 6 B 254 PHE TYR ASN ALA ARG ARG ARG GLN LEU GLN GLN PRO GLU SEQRES 7 B 254 ILE GLN PRO ASN ALA ALA HIS LEU ALA LEU ALA LYS LEU SEQRES 8 B 254 GLN ASP ALA LEU GLY ASP ARG PHE LEU LEU VAL THR GLN SEQRES 9 B 254 ASN CYS ASP ASN LEU HIS GLU ARG ALA GLY ASN THR ASN SEQRES 10 B 254 VAL ILE HIS MET HIS GLY GLU LEU LEU LYS VAL ARG CYS SEQRES 11 B 254 SER GLN SER GLY GLN ALA LEU ASP TRP THR GLY ASP VAL SEQRES 12 B 254 THR PRO GLU ASP LYS CYS HIS CYS CYS GLN PHE PRO ALA SEQRES 13 B 254 PRO LEU ARG PRO HIS VAL VAL TRP PHE GLY GLU MET PRO SEQRES 14 B 254 LEU GLY MET ASP GLU ILE TYR MET ALA LEU SER MET ALA SEQRES 15 B 254 ASP ILE PHE ILE ALA ILE GLY THR SER GLY HIS VAL TYR SEQRES 16 B 254 PRO ALA ALA GLY PHE VAL HIS GLU ALA LYS LEU HIS GLY SEQRES 17 B 254 ALA HIS THR VAL GLU LEU ASN LEU GLU PRO SER GLN VAL SEQRES 18 B 254 GLY ASN GLU PHE ALA GLU LYS TYR TYR GLY PRO ALA SER SEQRES 19 B 254 GLN VAL VAL PRO GLU PHE VAL GLU LYS LEU LEU LYS GLY SEQRES 20 B 254 LEU LYS ALA GLY SER ILE ALA SEQRES 1 C 11 LYS GLY GLY ALA KCR ARG HIS ARG LYS ILE LEU SEQRES 1 D 11 LYS GLY GLY ALA KCR ARG HIS ARG LYS ILE LEU MODRES 6RXP KCR C 16 LYS MODIFIED RESIDUE MODRES 6RXP KCR D 16 LYS MODIFIED RESIDUE HET KCR C 16 14 HET KCR D 16 14 HET ZN A 301 1 HET ZN B 301 1 HETNAM KCR N-6-CROTONYL-L-LYSINE HETNAM ZN ZINC ION FORMUL 3 KCR 2(C10 H18 N2 O3) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *335(H2 O) HELIX 1 AA1 ALA A 49 GLU A 54 1 6 HELIX 2 AA2 VAL A 72 GLY A 76 1 5 HELIX 3 AA3 THR A 77 ASP A 84 1 8 HELIX 4 AA4 ASP A 84 GLN A 100 1 17 HELIX 5 AA5 ASN A 107 GLY A 121 1 15 HELIX 6 AA6 ASN A 133 GLY A 139 1 7 HELIX 7 AA7 GLY A 196 ALA A 207 1 12 HELIX 8 AA8 PRO A 221 ALA A 223 5 3 HELIX 9 AA9 GLY A 224 HIS A 232 1 9 HELIX 10 AB1 PRO A 257 GLY A 272 1 16 HELIX 11 AB2 ALA B 49 GLU B 54 1 6 HELIX 12 AB3 VAL B 72 GLY B 76 1 5 HELIX 13 AB4 THR B 77 ASP B 84 1 8 HELIX 14 AB5 ASP B 84 GLN B 100 1 17 HELIX 15 AB6 ASN B 107 GLY B 121 1 15 HELIX 16 AB7 ASN B 133 GLY B 139 1 7 HELIX 17 AB8 GLY B 196 ALA B 207 1 12 HELIX 18 AB9 PRO B 221 ALA B 223 5 3 HELIX 19 AC1 GLY B 224 HIS B 232 1 9 HELIX 20 AC2 VAL B 246 PHE B 250 5 5 HELIX 21 AC3 PRO B 257 LYS B 274 1 18 SHEET 1 AA1 6 ILE A 144 HIS A 145 0 SHEET 2 AA1 6 PHE A 124 THR A 128 1 N THR A 128 O ILE A 144 SHEET 3 AA1 6 VAL A 43 THR A 47 1 N VAL A 45 O VAL A 127 SHEET 4 AA1 6 ILE A 209 ILE A 213 1 O ILE A 211 N LEU A 46 SHEET 5 AA1 6 HIS A 235 ASN A 240 1 O VAL A 237 N PHE A 210 SHEET 6 AA1 6 GLU A 252 TYR A 255 1 O TYR A 254 N GLU A 238 SHEET 1 AA2 2 LEU A 66 TRP A 67 0 SHEET 2 AA2 2 HIS A 70 ARG A 71 -1 O HIS A 70 N TRP A 67 SHEET 1 AA3 3 ALA A 161 ASP A 163 0 SHEET 2 AA3 3 GLY A 148 CYS A 155 -1 N VAL A 153 O LEU A 162 SHEET 3 AA3 3 LEU A 183 VAL A 187 -1 O ARG A 184 N ARG A 154 SHEET 1 AA4 2 VAL A 219 TYR A 220 0 SHEET 2 AA4 2 ARG C 17 HIS C 18 -1 O ARG C 17 N TYR A 220 SHEET 1 AA5 6 ILE B 144 HIS B 145 0 SHEET 2 AA5 6 PHE B 124 THR B 128 1 N THR B 128 O ILE B 144 SHEET 3 AA5 6 VAL B 43 THR B 47 1 N VAL B 45 O VAL B 127 SHEET 4 AA5 6 ILE B 209 ILE B 213 1 O ILE B 213 N LEU B 46 SHEET 5 AA5 6 HIS B 235 ASN B 240 1 O VAL B 237 N PHE B 210 SHEET 6 AA5 6 GLU B 252 TYR B 255 1 O TYR B 254 N GLU B 238 SHEET 1 AA6 3 ALA B 62 ALA B 63 0 SHEET 2 AA6 3 LEU B 66 TRP B 67 -1 O LEU B 66 N ALA B 63 SHEET 3 AA6 3 HIS B 70 ARG B 71 -1 O HIS B 70 N TRP B 67 SHEET 1 AA7 3 ALA B 161 ASP B 163 0 SHEET 2 AA7 3 GLY B 148 CYS B 155 -1 N VAL B 153 O LEU B 162 SHEET 3 AA7 3 LEU B 183 VAL B 187 -1 O ARG B 184 N ARG B 154 SHEET 1 AA8 2 VAL B 219 TYR B 220 0 SHEET 2 AA8 2 ARG D 17 HIS D 18 -1 O ARG D 17 N TYR B 220 LINK C ALA C 15 N KCR C 16 1555 1555 1.33 LINK C KCR C 16 N ARG C 17 1555 1555 1.32 LINK C ALA D 15 N KCR D 16 1555 1555 1.33 LINK C KCR D 16 N ARG D 17 1555 1555 1.33 LINK SG CYS A 155 ZN ZN A 301 1555 1555 2.48 LINK SG CYS A 174 ZN ZN A 301 1555 1555 2.41 LINK SG CYS A 176 ZN ZN A 301 1555 1555 2.40 LINK SG CYS A 177 ZN ZN A 301 1555 1555 2.40 LINK ZN ZN A 301 O HOH A 444 1555 1555 2.19 LINK SG CYS B 155 ZN ZN B 301 1555 1555 2.40 LINK SG CYS B 174 ZN ZN B 301 1555 1555 2.24 LINK SG CYS B 176 ZN ZN B 301 1555 1555 2.34 LINK SG CYS B 177 ZN ZN B 301 1555 1555 2.39 CISPEP 1 TYR A 220 PRO A 221 0 1.00 CISPEP 2 TYR B 220 PRO B 221 0 1.19 SITE 1 AC1 5 CYS A 155 CYS A 174 CYS A 176 CYS A 177 SITE 2 AC1 5 HOH A 444 SITE 1 AC2 5 CYS B 155 SER B 158 CYS B 174 CYS B 176 SITE 2 AC2 5 CYS B 177 CRYST1 57.560 91.890 95.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010428 0.00000