HEADER ANTIMICROBIAL PROTEIN 10-JUN-19 6RY9 TITLE WINTER FLOUNDER 1A-1 IN SDS MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLEUROCIDIN-LIKE PREPROPOLYPEPTIDE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PSEUDOPLEURONECTES AMERICANUS; SOURCE 4 ORGANISM_COMMON: WINTER FLOUNDER; SOURCE 5 ORGANISM_TAXID: 8265 KEYWDS WINTER FLOUNDER, ANTIMICROBIAL PEPTIDE, AMP, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 100 AUTHOR M.CLARKE,A.J.MASON REVDAT 2 15-MAY-24 6RY9 1 REMARK REVDAT 1 15-JUL-20 6RY9 0 JRNL AUTH M.CLARKE,A.J.MASON JRNL TITL WINTER FLOUNDER 1A-1 IN SDS MICELLES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYNAMO REMARK 3 AUTHORS : DELAGLIO AND KUSZEWSKI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102800. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 0.5 WF1A-1; 0.5 WF1A-1 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM NA WF 1A-1, 50 MM U-98% REMARK 210 2H DEUTERATED SODIUM DODECYL REMARK 210 SULPHATE (D-25) SDS, 0.05 W/W NA REMARK 210 TSP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, NMRPIPE, DYNAMO REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 100 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 2 19.35 -165.93 REMARK 500 1 ARG A 5 85.68 -61.06 REMARK 500 1 LYS A 6 72.05 49.04 REMARK 500 1 TRP A 7 0.38 -167.19 REMARK 500 1 ARG A 9 16.25 -171.68 REMARK 500 1 ARG A 10 -87.14 -48.14 REMARK 500 1 LYS A 13 -16.55 -45.52 REMARK 500 1 ILE A 18 108.44 62.11 REMARK 500 1 LEU A 23 -156.44 -82.31 REMARK 500 1 ASP A 24 9.89 53.25 REMARK 500 1 HIS A 25 53.97 -155.34 REMARK 500 2 ARG A 2 52.58 -171.86 REMARK 500 2 LYS A 4 61.59 -161.68 REMARK 500 2 ARG A 5 -175.24 47.30 REMARK 500 2 TRP A 7 -2.27 -151.65 REMARK 500 2 LEU A 8 8.39 -68.06 REMARK 500 2 ARG A 10 -83.38 -52.87 REMARK 500 2 LYS A 13 -15.53 -49.54 REMARK 500 2 ILE A 18 76.06 -152.74 REMARK 500 2 ALA A 22 -51.64 -157.38 REMARK 500 2 ASP A 24 40.08 -166.14 REMARK 500 3 LYS A 4 73.19 -169.66 REMARK 500 3 ARG A 5 175.61 52.65 REMARK 500 3 TRP A 7 -6.53 -169.69 REMARK 500 3 LEU A 8 2.58 -63.30 REMARK 500 3 ARG A 10 -92.83 -48.11 REMARK 500 3 ILE A 17 39.33 -77.13 REMARK 500 3 ILE A 18 56.21 34.64 REMARK 500 3 ASP A 24 -21.33 -171.27 REMARK 500 3 HIS A 25 37.08 -76.17 REMARK 500 4 LYS A 4 -78.11 -142.87 REMARK 500 4 ARG A 5 59.85 -171.16 REMARK 500 4 TRP A 7 10.81 -171.77 REMARK 500 4 LEU A 8 -92.14 -71.06 REMARK 500 4 ARG A 9 25.17 -166.73 REMARK 500 4 ILE A 17 4.11 -66.93 REMARK 500 4 ILE A 18 88.40 62.64 REMARK 500 4 LEU A 23 42.93 -77.37 REMARK 500 4 ASP A 24 -35.74 -171.90 REMARK 500 4 HIS A 25 88.89 51.27 REMARK 500 5 ARG A 2 70.76 56.50 REMARK 500 5 LYS A 4 37.83 -162.18 REMARK 500 5 ARG A 5 93.09 54.31 REMARK 500 5 LYS A 6 169.87 54.12 REMARK 500 5 LEU A 8 -81.41 -60.23 REMARK 500 5 ARG A 9 16.67 -164.10 REMARK 500 5 ARG A 10 -89.81 -40.46 REMARK 500 5 LYS A 13 -19.01 -43.53 REMARK 500 5 ILE A 17 -7.61 -51.73 REMARK 500 5 ILE A 18 66.95 70.15 REMARK 500 REMARK 500 THIS ENTRY HAS 1022 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 2 0.16 SIDE CHAIN REMARK 500 1 ARG A 3 0.26 SIDE CHAIN REMARK 500 1 ARG A 5 0.32 SIDE CHAIN REMARK 500 1 ARG A 9 0.31 SIDE CHAIN REMARK 500 1 ARG A 10 0.08 SIDE CHAIN REMARK 500 2 ARG A 2 0.30 SIDE CHAIN REMARK 500 2 ARG A 3 0.31 SIDE CHAIN REMARK 500 2 ARG A 9 0.32 SIDE CHAIN REMARK 500 3 ARG A 2 0.23 SIDE CHAIN REMARK 500 3 ARG A 3 0.30 SIDE CHAIN REMARK 500 3 ARG A 5 0.14 SIDE CHAIN REMARK 500 3 ARG A 9 0.29 SIDE CHAIN REMARK 500 3 ARG A 10 0.32 SIDE CHAIN REMARK 500 4 ARG A 2 0.18 SIDE CHAIN REMARK 500 4 ARG A 3 0.14 SIDE CHAIN REMARK 500 4 ARG A 5 0.12 SIDE CHAIN REMARK 500 4 ARG A 10 0.29 SIDE CHAIN REMARK 500 5 ARG A 2 0.13 SIDE CHAIN REMARK 500 5 ARG A 3 0.22 SIDE CHAIN REMARK 500 5 ARG A 5 0.30 SIDE CHAIN REMARK 500 5 ARG A 9 0.29 SIDE CHAIN REMARK 500 5 ARG A 10 0.32 SIDE CHAIN REMARK 500 6 ARG A 2 0.25 SIDE CHAIN REMARK 500 6 ARG A 3 0.32 SIDE CHAIN REMARK 500 6 ARG A 5 0.21 SIDE CHAIN REMARK 500 6 ARG A 9 0.31 SIDE CHAIN REMARK 500 6 ARG A 10 0.11 SIDE CHAIN REMARK 500 7 ARG A 2 0.27 SIDE CHAIN REMARK 500 7 ARG A 9 0.18 SIDE CHAIN REMARK 500 7 ARG A 10 0.23 SIDE CHAIN REMARK 500 8 ARG A 2 0.16 SIDE CHAIN REMARK 500 8 ARG A 3 0.08 SIDE CHAIN REMARK 500 8 ARG A 9 0.08 SIDE CHAIN REMARK 500 8 ARG A 10 0.27 SIDE CHAIN REMARK 500 9 ARG A 3 0.21 SIDE CHAIN REMARK 500 9 ARG A 5 0.26 SIDE CHAIN REMARK 500 9 ARG A 9 0.30 SIDE CHAIN REMARK 500 9 ARG A 10 0.31 SIDE CHAIN REMARK 500 10 ARG A 2 0.15 SIDE CHAIN REMARK 500 10 ARG A 3 0.28 SIDE CHAIN REMARK 500 10 ARG A 5 0.32 SIDE CHAIN REMARK 500 10 ARG A 9 0.31 SIDE CHAIN REMARK 500 10 ARG A 10 0.32 SIDE CHAIN REMARK 500 11 ARG A 2 0.31 SIDE CHAIN REMARK 500 11 ARG A 3 0.20 SIDE CHAIN REMARK 500 11 ARG A 5 0.19 SIDE CHAIN REMARK 500 11 ARG A 9 0.29 SIDE CHAIN REMARK 500 11 ARG A 10 0.21 SIDE CHAIN REMARK 500 12 ARG A 2 0.12 SIDE CHAIN REMARK 500 12 ARG A 3 0.13 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 437 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34410 RELATED DB: BMRB REMARK 900 WINTER FLOUNDER 1A-1 IN SDS MICELLES DBREF 6RY9 A 1 26 UNP Q90WJ0 Q90WJ0_PSEAM 22 47 SEQRES 1 A 26 GLY ARG ARG LYS ARG LYS TRP LEU ARG ARG ILE GLY LYS SEQRES 2 A 26 GLY VAL LYS ILE ILE GLY GLY ALA ALA LEU ASP HIS LEU HELIX 1 AA1 ILE A 11 LYS A 16 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MODEL 21 ENDMDL MODEL 22 ENDMDL MODEL 23 ENDMDL MODEL 24 ENDMDL MODEL 25 ENDMDL MODEL 26 ENDMDL MODEL 27 ENDMDL MODEL 28 ENDMDL MODEL 29 ENDMDL MODEL 30 ENDMDL MODEL 31 ENDMDL MODEL 32 ENDMDL MODEL 33 ENDMDL MODEL 34 ENDMDL MODEL 35 ENDMDL MODEL 36 ENDMDL MODEL 37 ENDMDL MODEL 38 ENDMDL MODEL 39 ENDMDL MODEL 40 ENDMDL MODEL 41 ENDMDL MODEL 42 ENDMDL MODEL 43 ENDMDL MODEL 44 ENDMDL MODEL 45 ENDMDL MODEL 46 ENDMDL MODEL 47 ENDMDL MODEL 48 ENDMDL MODEL 49 ENDMDL MODEL 50 ENDMDL MODEL 51 ENDMDL MODEL 52 ENDMDL MODEL 53 ENDMDL MODEL 54 ENDMDL MODEL 55 ENDMDL MODEL 56 ENDMDL MODEL 57 ENDMDL MODEL 58 ENDMDL MODEL 59 ENDMDL MODEL 60 ENDMDL MODEL 61 ENDMDL MODEL 62 ENDMDL MODEL 63 ENDMDL MODEL 64 ENDMDL MODEL 65 ENDMDL MODEL 66 ENDMDL MODEL 67 ENDMDL MODEL 68 ENDMDL MODEL 69 ENDMDL MODEL 70 ENDMDL MODEL 71 ENDMDL MODEL 72 ENDMDL MODEL 73 ENDMDL MODEL 74 ENDMDL MODEL 75 ENDMDL MODEL 76 ENDMDL MODEL 77 ENDMDL MODEL 78 ENDMDL MODEL 79 ENDMDL MODEL 80 ENDMDL MODEL 81 ENDMDL MODEL 82 ENDMDL MODEL 83 ENDMDL MODEL 84 ENDMDL MODEL 85 ENDMDL MODEL 86 ENDMDL MODEL 87 ENDMDL MODEL 88 ENDMDL MODEL 89 ENDMDL MODEL 90 ENDMDL MODEL 91 ENDMDL MODEL 92 ENDMDL MODEL 93 ENDMDL MODEL 94 ENDMDL MODEL 95 ENDMDL MODEL 96 ENDMDL MODEL 97 ENDMDL MODEL 98 ENDMDL MODEL 99 ENDMDL MODEL 100 ENDMDL MASTER 221 0 0 1 0 0 0 6 208 1 0 2 END