HEADER HYDROLASE 12-JUN-19 6RZ0 TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI GLYOXALASE II COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYACYLGLUTATHIONE HYDROLASE GLOB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYOXALASE II,GLX II; COMPND 5 EC: 3.1.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: GLOB, YAFR, B0212, JW0202; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS METALLO-BETA-LACTAMASE, METAL-ION-BINDING, GLYOXALASE II KEYWDS 2 (HYDROXYACYLGLUTATHIONE HYDROLASE), RIBONUCLEASE KEYWDS 3 Z/HYDROXYACYLGLUTATHIONE HYDROLASE-LIKE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SKORUPSKAITE,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 2 24-JAN-24 6RZ0 1 LINK REVDAT 1 15-JUL-20 6RZ0 0 JRNL AUTH A.SKORUPSKAITE,M.A.MCDONOUGH,J.BREM,C.J.SCHOFIELD JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI GLYOXALASE II JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 214302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.128 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.480 REMARK 3 FREE R VALUE TEST SET COUNT : 3176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8277 - 3.1280 1.00 9200 140 0.1270 0.1343 REMARK 3 2 3.1280 - 2.4828 1.00 9178 141 0.1177 0.1221 REMARK 3 3 2.4828 - 2.1690 1.00 9231 145 0.1088 0.1145 REMARK 3 4 2.1690 - 1.9707 1.00 9187 142 0.1134 0.1193 REMARK 3 5 1.9707 - 1.8294 1.00 9239 133 0.1175 0.1454 REMARK 3 6 1.8294 - 1.7215 1.00 9195 140 0.1169 0.1504 REMARK 3 7 1.7215 - 1.6353 1.00 9272 131 0.1158 0.1214 REMARK 3 8 1.6353 - 1.5641 1.00 9175 146 0.1119 0.1389 REMARK 3 9 1.5641 - 1.5039 1.00 9237 141 0.1121 0.1382 REMARK 3 10 1.5039 - 1.4520 1.00 9222 140 0.1118 0.1162 REMARK 3 11 1.4520 - 1.4066 1.00 9230 145 0.1157 0.1320 REMARK 3 12 1.4066 - 1.3664 1.00 9204 124 0.1178 0.1284 REMARK 3 13 1.3664 - 1.3304 1.00 9250 168 0.1223 0.1217 REMARK 3 14 1.3304 - 1.2980 1.00 9199 129 0.1233 0.1284 REMARK 3 15 1.2980 - 1.2685 1.00 9212 125 0.1206 0.1155 REMARK 3 16 1.2685 - 1.2415 1.00 9183 162 0.1211 0.1259 REMARK 3 17 1.2415 - 1.2166 1.00 9272 128 0.1239 0.1103 REMARK 3 18 1.2166 - 1.1937 1.00 9190 144 0.1280 0.1383 REMARK 3 19 1.1937 - 1.1723 1.00 9276 125 0.1250 0.1355 REMARK 3 20 1.1723 - 1.1525 1.00 9166 137 0.1281 0.1329 REMARK 3 21 1.1525 - 1.1339 1.00 9245 140 0.1285 0.1244 REMARK 3 22 1.1339 - 1.1164 0.97 8987 146 0.1342 0.1239 REMARK 3 23 1.1164 - 1.1000 0.93 8576 104 0.1375 0.1291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.050 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7027 40.8213 32.6222 REMARK 3 T TENSOR REMARK 3 T11: 0.0423 T22: 0.0389 REMARK 3 T33: 0.0440 T12: -0.0015 REMARK 3 T13: 0.0018 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.7334 L22: 0.3934 REMARK 3 L33: 0.4920 L12: -0.1077 REMARK 3 L13: -0.1187 L23: 0.1009 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.0011 S13: -0.0007 REMARK 3 S21: 0.0001 S22: -0.0075 S23: 0.0372 REMARK 3 S31: 0.0057 S32: -0.0450 S33: 0.0120 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.0917 34.5042 25.9685 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.0498 REMARK 3 T33: 0.0433 T12: 0.0088 REMARK 3 T13: 0.0032 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.7663 L22: 4.5050 REMARK 3 L33: 0.3418 L12: 2.7857 REMARK 3 L13: 0.3212 L23: 0.4394 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: 0.0559 S13: -0.0365 REMARK 3 S21: -0.1092 S22: 0.0595 S23: -0.0586 REMARK 3 S31: -0.0088 S32: 0.0375 S33: -0.0261 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.3471 29.2947 33.0961 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.0282 REMARK 3 T33: 0.0521 T12: 0.0161 REMARK 3 T13: 0.0054 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.2510 L22: 1.0769 REMARK 3 L33: 1.0246 L12: 0.6925 REMARK 3 L13: -0.1420 L23: -0.1380 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: -0.1033 S13: -0.0960 REMARK 3 S21: 0.0987 S22: -0.0458 S23: -0.0676 REMARK 3 S31: 0.0594 S32: 0.0434 S33: -0.0033 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4723 19.5535 18.3183 REMARK 3 T TENSOR REMARK 3 T11: 0.0502 T22: 0.0460 REMARK 3 T33: 0.0381 T12: 0.0012 REMARK 3 T13: 0.0052 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 3.3872 L22: 3.3834 REMARK 3 L33: 0.4961 L12: -2.9957 REMARK 3 L13: -1.1727 L23: 0.8378 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.0725 S13: 0.0116 REMARK 3 S21: -0.0026 S22: -0.0179 S23: -0.0341 REMARK 3 S31: 0.0076 S32: 0.0130 S33: -0.0045 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.1376 16.0630 18.4979 REMARK 3 T TENSOR REMARK 3 T11: 0.0469 T22: 0.0324 REMARK 3 T33: 0.0489 T12: -0.0047 REMARK 3 T13: 0.0040 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 5.0988 L22: 2.8562 REMARK 3 L33: 2.7056 L12: -2.7939 REMARK 3 L13: 1.7961 L23: -1.0508 REMARK 3 S TENSOR REMARK 3 S11: 0.0571 S12: 0.0223 S13: -0.2523 REMARK 3 S21: -0.0384 S22: 0.0071 S23: 0.0714 REMARK 3 S31: 0.1116 S32: 0.0076 S33: -0.0588 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.4784 20.6085 29.2563 REMARK 3 T TENSOR REMARK 3 T11: 0.0823 T22: 0.0346 REMARK 3 T33: 0.0508 T12: 0.0144 REMARK 3 T13: 0.0016 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.7886 L22: 1.1384 REMARK 3 L33: 2.2142 L12: 0.1488 REMARK 3 L13: 0.0436 L23: 0.0683 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: -0.1121 S13: -0.1207 REMARK 3 S21: 0.1056 S22: 0.0022 S23: -0.0954 REMARK 3 S31: 0.1169 S32: 0.1674 S33: -0.0114 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.6933 18.6757 25.5439 REMARK 3 T TENSOR REMARK 3 T11: 0.1697 T22: 0.3263 REMARK 3 T33: 0.1878 T12: 0.1145 REMARK 3 T13: -0.0476 T23: -0.1072 REMARK 3 L TENSOR REMARK 3 L11: 2.4927 L22: 4.5749 REMARK 3 L33: 7.6837 L12: 1.5644 REMARK 3 L13: 1.7557 L23: 4.9804 REMARK 3 S TENSOR REMARK 3 S11: -0.1430 S12: -0.4052 S13: 0.0500 REMARK 3 S21: 0.2489 S22: 0.4815 S23: -0.4433 REMARK 3 S31: -0.1195 S32: 0.2019 S33: -0.2701 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.4158 27.8007 23.9468 REMARK 3 T TENSOR REMARK 3 T11: 0.1136 T22: 0.1505 REMARK 3 T33: 0.1463 T12: 0.0437 REMARK 3 T13: -0.0005 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 4.7588 L22: 4.9463 REMARK 3 L33: 4.2837 L12: -0.2866 REMARK 3 L13: 1.6212 L23: -1.0574 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: -0.2533 S13: 0.1673 REMARK 3 S21: 0.0154 S22: 0.2846 S23: -0.5190 REMARK 3 S31: 0.1924 S32: 0.5152 S33: -0.1885 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135359 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.990 REMARK 200 RESOLUTION RANGE LOW (A) : 47.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 35.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CAPS/NAOH PH 10.5, 0.2 M NACL, REMARK 280 20% PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.69100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.36300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.69150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.36300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.69100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.69150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CD OE1 OE2 REMARK 470 LYS A 68 CD CE NZ REMARK 470 LYS A 120 NZ REMARK 470 LYS A 151 NZ REMARK 470 LEU A 233 CD1 CD2 REMARK 470 GLN A 235 CB CG CD OE1 NE2 REMARK 470 GLN A 236 CG CD OE1 NE2 REMARK 470 LYS A 247 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 409 O HOH A 638 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 9 -138.79 53.82 REMARK 500 ASP A 11 18.75 -155.40 REMARK 500 CYS A 162 76.49 -109.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 856 DISTANCE = 6.05 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CXS A 305 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 53 NE2 REMARK 620 2 HIS A 55 ND1 94.8 REMARK 620 3 HIS A 110 NE2 101.4 93.6 REMARK 620 4 ASP A 127 OD2 94.5 170.3 87.2 REMARK 620 5 HOH A 430 O 121.1 99.7 133.7 73.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 56 NE2 REMARK 620 2 HIS A 181 ND1 135.9 REMARK 620 3 HOH A 713 O 106.1 67.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD2 REMARK 620 2 HIS A 58 NE2 86.5 REMARK 620 3 ASP A 127 OD2 166.7 94.5 REMARK 620 4 HIS A 165 NE2 87.3 117.6 103.9 REMARK 620 5 HOH A 430 O 88.1 102.9 78.7 138.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CXS A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 308 DBREF 6RZ0 A 1 251 UNP P0AC84 GLO2_ECOLI 1 251 SEQRES 1 A 251 MET ASN LEU ASN SER ILE PRO ALA PHE ASP ASP ASN TYR SEQRES 2 A 251 ILE TRP VAL LEU ASN ASP GLU ALA GLY ARG CYS LEU ILE SEQRES 3 A 251 VAL ASP PRO GLY ASP ALA GLU PRO VAL LEU ASN ALA ILE SEQRES 4 A 251 ALA ALA ASN ASN TRP GLN PRO GLU ALA ILE PHE LEU THR SEQRES 5 A 251 HIS HIS HIS HIS ASP HIS VAL GLY GLY VAL LYS GLU LEU SEQRES 6 A 251 VAL GLU LYS PHE PRO GLN ILE VAL VAL TYR GLY PRO GLN SEQRES 7 A 251 GLU THR GLN ASP LYS GLY THR THR GLN VAL VAL LYS ASP SEQRES 8 A 251 GLY GLU THR ALA PHE VAL LEU GLY HIS GLU PHE SER VAL SEQRES 9 A 251 ILE ALA THR PRO GLY HIS THR LEU GLY HIS ILE CYS TYR SEQRES 10 A 251 PHE SER LYS PRO TYR LEU PHE CYS GLY ASP THR LEU PHE SEQRES 11 A 251 SER GLY GLY CYS GLY ARG LEU PHE GLU GLY THR ALA SER SEQRES 12 A 251 GLN MET TYR GLN SER LEU LYS LYS LEU SER ALA LEU PRO SEQRES 13 A 251 ASP ASP THR LEU VAL CYS CYS ALA HIS GLU TYR THR LEU SEQRES 14 A 251 SER ASN MET LYS PHE ALA LEU SER ILE LEU PRO HIS ASP SEQRES 15 A 251 LEU SER ILE ASN ASP TYR TYR ARG LYS VAL LYS GLU LEU SEQRES 16 A 251 ARG ALA LYS ASN GLN ILE THR LEU PRO VAL ILE LEU LYS SEQRES 17 A 251 ASN GLU ARG GLN ILE ASN VAL PHE LEU ARG THR GLU ASP SEQRES 18 A 251 ILE ASP LEU ILE ASN VAL ILE ASN GLU GLU THR LEU LEU SEQRES 19 A 251 GLN GLN PRO GLU GLU ARG PHE ALA TRP LEU ARG SER LYS SEQRES 20 A 251 LYS ASP ARG PHE HET GOL A 301 14 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET CXS A 305 25 HET CL A 306 1 HET CL A 307 1 HET ZN A 308 1 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 ZN 4(ZN 2+) FORMUL 6 CXS C9 H19 N O3 S FORMUL 7 CL 2(CL 1-) FORMUL 10 HOH *456(H2 O) HELIX 1 AA1 ASP A 31 ASN A 43 1 13 HELIX 2 AA2 HIS A 55 GLY A 60 1 6 HELIX 3 AA3 GLY A 61 PHE A 69 1 9 HELIX 4 AA4 PRO A 77 GLY A 84 5 8 HELIX 5 AA5 THR A 141 ALA A 154 1 14 HELIX 6 AA6 TYR A 167 LEU A 179 1 13 HELIX 7 AA7 ASP A 182 LYS A 198 1 17 HELIX 8 AA8 LEU A 207 ASN A 214 1 8 HELIX 9 AA9 VAL A 215 ARG A 218 5 4 HELIX 10 AB1 ASP A 221 GLU A 230 1 10 HELIX 11 AB2 GLN A 236 PHE A 251 1 16 SHEET 1 AA1 6 ASN A 2 ALA A 8 0 SHEET 2 AA1 6 ASN A 12 ASN A 18 -1 O ILE A 14 N ILE A 6 SHEET 3 AA1 6 ARG A 23 VAL A 27 -1 O VAL A 27 N TRP A 15 SHEET 4 AA1 6 GLN A 45 PHE A 50 1 O GLU A 47 N CYS A 24 SHEET 5 AA1 6 VAL A 73 GLY A 76 1 O TYR A 75 N ILE A 49 SHEET 6 AA1 6 GLN A 87 VAL A 88 1 N GLN A 87 O VAL A 74 SHEET 1 AA2 6 THR A 94 VAL A 97 0 SHEET 2 AA2 6 HIS A 100 ALA A 106 -1 O PHE A 102 N ALA A 95 SHEET 3 AA2 6 ILE A 115 SER A 119 -1 O PHE A 118 N SER A 103 SHEET 4 AA2 6 TYR A 122 GLY A 126 -1 O PHE A 124 N TYR A 117 SHEET 5 AA2 6 LEU A 160 CYS A 163 1 O CYS A 162 N LEU A 123 SHEET 6 AA2 6 VAL A 205 ILE A 206 -1 O VAL A 205 N VAL A 161 SHEET 1 AA3 2 LEU A 129 PHE A 130 0 SHEET 2 AA3 2 GLY A 133 CYS A 134 -1 O GLY A 133 N PHE A 130 LINK NE2 HIS A 53 ZN ZN A 303 1555 1555 2.08 LINK ND1 HIS A 55 ZN ZN A 303 1555 1555 2.16 LINK NE2 HIS A 56 ZN ZN A 302 1555 1555 2.03 LINK OD2 ASP A 57 ZN ZN A 304 1555 1555 2.30 LINK NE2 HIS A 58 ZN ZN A 304 1555 1555 2.05 LINK NE2 HIS A 100 ZN ZN A 308 1555 1555 2.32 LINK NE2 HIS A 110 ZN ZN A 303 1555 1555 2.09 LINK OD2 ASP A 127 ZN ZN A 303 1555 1555 2.40 LINK OD2 ASP A 127 ZN ZN A 304 1555 1555 2.12 LINK NE2 HIS A 165 ZN ZN A 304 1555 1555 2.03 LINK ND1 HIS A 181 ZN ZN A 302 1555 3745 2.04 LINK ZN ZN A 302 O HOH A 713 1555 1555 2.12 LINK ZN ZN A 303 O HOH A 430 1555 1555 1.95 LINK ZN ZN A 304 O HOH A 430 1555 1555 1.99 CISPEP 1 LYS A 120 PRO A 121 0 3.86 CISPEP 2 LEU A 203 PRO A 204 0 -2.34 SITE 1 AC1 10 LEU A 195 ILE A 201 THR A 202 LEU A 203 SITE 2 AC1 10 PRO A 204 HOH A 443 HOH A 500 HOH A 552 SITE 3 AC1 10 HOH A 565 HOH A 573 SITE 1 AC2 4 HIS A 56 HIS A 181 CL A 306 HOH A 713 SITE 1 AC3 6 HIS A 53 HIS A 55 HIS A 110 ASP A 127 SITE 2 AC3 6 ZN A 304 HOH A 430 SITE 1 AC4 6 ASP A 57 HIS A 58 ASP A 127 HIS A 165 SITE 2 AC4 6 ZN A 303 HOH A 430 SITE 1 AC5 6 ASN A 186 ASP A 187 ARG A 190 ASP A 249 SITE 2 AC5 6 HOH A 621 HOH A 832 SITE 1 AC6 5 HIS A 56 LEU A 179 PRO A 180 HIS A 181 SITE 2 AC6 5 ZN A 302 SITE 1 AC7 2 HIS A 110 ARG A 136 SITE 1 AC8 1 HIS A 100 CRYST1 59.382 63.383 72.726 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016840 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013750 0.00000