HEADER ANTIMICROBIAL PROTEIN 12-JUN-19 6RZ1 TITLE WINTER FLOUNDER 3 IN SDS MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLEUROCIDIN-LIKE PEPTIDE WF3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PSEUDOPLEURONECTES AMERICANUS; SOURCE 4 ORGANISM_COMMON: WINTER FLOUNDER; SOURCE 5 ORGANISM_TAXID: 8265 KEYWDS WINTER FLOUNDER, AMP, ANTIMICROBIAL PEPTIDE, PLEUROCIDIN-LIKE, KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 100 AUTHOR A.J.MASON,M.CLARKE REVDAT 2 14-JUN-23 6RZ1 1 REMARK REVDAT 1 15-JUL-20 6RZ1 0 JRNL AUTH A.J.MASON,M.CLARKE JRNL TITL STRUCTURE OF WINTER FLOUNDER AMP 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYNAMO REMARK 3 AUTHORS : DELAGLIO AND KUSZEWSKI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102872. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.5 MM WF3 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM NA PEPTIDE, 50 MM U-98% REMARK 210 DODECYL-D25 SULFATE SODIUM SALT, REMARK 210 SDS-D25 SDS, 0.005 % W/W NA TSP, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, NMRPIPE, DYNAMO REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 100 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 5 28.70 -79.56 REMARK 500 1 ILE A 6 -156.05 35.54 REMARK 500 1 ALA A 9 72.95 54.76 REMARK 500 1 ILE A 10 -67.84 67.33 REMARK 500 1 HIS A 11 3.24 -157.91 REMARK 500 1 ARG A 14 -23.84 -165.60 REMARK 500 1 ILE A 16 -78.53 -67.00 REMARK 500 1 HIS A 17 77.82 -167.60 REMARK 500 1 ILE A 20 -11.61 61.78 REMARK 500 1 HIS A 23 -107.71 46.03 REMARK 500 2 LEU A 2 86.21 -69.17 REMARK 500 2 LEU A 5 30.13 -78.44 REMARK 500 2 ILE A 6 -143.62 47.18 REMARK 500 2 ALA A 9 73.97 62.16 REMARK 500 2 ILE A 10 -87.01 41.86 REMARK 500 2 ARG A 14 -24.66 -155.31 REMARK 500 2 ILE A 16 -76.91 -81.91 REMARK 500 2 HIS A 17 73.31 -172.83 REMARK 500 2 MET A 19 18.68 37.25 REMARK 500 2 ILE A 20 -2.66 55.62 REMARK 500 2 GLN A 21 -18.56 -141.78 REMARK 500 2 HIS A 23 -167.14 74.05 REMARK 500 3 LEU A 2 78.99 52.90 REMARK 500 3 ALA A 4 12.85 -160.46 REMARK 500 3 LEU A 5 18.74 50.70 REMARK 500 3 ILE A 6 -141.86 48.52 REMARK 500 3 ALA A 9 70.35 53.82 REMARK 500 3 ILE A 10 -68.79 66.65 REMARK 500 3 HIS A 11 -2.37 -148.87 REMARK 500 3 ARG A 14 -55.94 -132.96 REMARK 500 3 PHE A 15 -77.17 -59.35 REMARK 500 3 HIS A 17 -64.27 -138.03 REMARK 500 3 MET A 19 82.05 171.99 REMARK 500 3 GLN A 21 25.55 105.25 REMARK 500 3 HIS A 23 29.78 43.85 REMARK 500 4 ALA A 4 46.26 -171.05 REMARK 500 4 LEU A 5 -9.88 -163.19 REMARK 500 4 ILE A 6 -142.12 50.41 REMARK 500 4 ALA A 9 72.24 61.99 REMARK 500 4 ILE A 10 -68.94 67.10 REMARK 500 4 HIS A 11 7.50 -159.92 REMARK 500 4 ILE A 16 71.86 -171.09 REMARK 500 4 HIS A 17 -13.09 -174.19 REMARK 500 4 MET A 19 -60.86 -177.56 REMARK 500 4 HIS A 23 -169.67 45.49 REMARK 500 5 LEU A 2 -154.88 -65.56 REMARK 500 5 ALA A 4 46.06 -77.99 REMARK 500 5 ILE A 6 -149.94 -75.81 REMARK 500 5 ALA A 9 71.50 65.01 REMARK 500 5 ILE A 10 -70.10 66.12 REMARK 500 REMARK 500 THIS ENTRY HAS 1013 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 14 0.24 SIDE CHAIN REMARK 500 3 ARG A 14 0.10 SIDE CHAIN REMARK 500 5 ARG A 14 0.27 SIDE CHAIN REMARK 500 6 ARG A 14 0.32 SIDE CHAIN REMARK 500 7 ARG A 14 0.24 SIDE CHAIN REMARK 500 8 ARG A 14 0.25 SIDE CHAIN REMARK 500 9 ARG A 14 0.15 SIDE CHAIN REMARK 500 10 ARG A 14 0.32 SIDE CHAIN REMARK 500 12 ARG A 14 0.13 SIDE CHAIN REMARK 500 13 ARG A 14 0.31 SIDE CHAIN REMARK 500 15 ARG A 14 0.10 SIDE CHAIN REMARK 500 17 ARG A 14 0.29 SIDE CHAIN REMARK 500 18 ARG A 14 0.10 SIDE CHAIN REMARK 500 19 ARG A 14 0.22 SIDE CHAIN REMARK 500 20 ARG A 14 0.17 SIDE CHAIN REMARK 500 21 ARG A 14 0.28 SIDE CHAIN REMARK 500 22 ARG A 14 0.26 SIDE CHAIN REMARK 500 23 ARG A 14 0.24 SIDE CHAIN REMARK 500 25 ARG A 14 0.28 SIDE CHAIN REMARK 500 26 ARG A 14 0.32 SIDE CHAIN REMARK 500 28 ARG A 14 0.26 SIDE CHAIN REMARK 500 29 ARG A 14 0.31 SIDE CHAIN REMARK 500 30 ARG A 14 0.20 SIDE CHAIN REMARK 500 31 ARG A 14 0.20 SIDE CHAIN REMARK 500 32 ARG A 14 0.19 SIDE CHAIN REMARK 500 33 ARG A 14 0.31 SIDE CHAIN REMARK 500 34 ARG A 14 0.09 SIDE CHAIN REMARK 500 35 ARG A 14 0.15 SIDE CHAIN REMARK 500 36 ARG A 14 0.32 SIDE CHAIN REMARK 500 37 ARG A 14 0.11 SIDE CHAIN REMARK 500 38 ARG A 14 0.28 SIDE CHAIN REMARK 500 39 ARG A 14 0.12 SIDE CHAIN REMARK 500 40 ARG A 14 0.31 SIDE CHAIN REMARK 500 41 ARG A 14 0.21 SIDE CHAIN REMARK 500 43 ARG A 14 0.32 SIDE CHAIN REMARK 500 44 ARG A 14 0.28 SIDE CHAIN REMARK 500 45 ARG A 14 0.29 SIDE CHAIN REMARK 500 46 ARG A 14 0.27 SIDE CHAIN REMARK 500 47 ARG A 14 0.29 SIDE CHAIN REMARK 500 48 ARG A 14 0.12 SIDE CHAIN REMARK 500 49 ARG A 14 0.32 SIDE CHAIN REMARK 500 51 ARG A 14 0.24 SIDE CHAIN REMARK 500 52 ARG A 14 0.28 SIDE CHAIN REMARK 500 53 ARG A 14 0.29 SIDE CHAIN REMARK 500 54 ARG A 14 0.32 SIDE CHAIN REMARK 500 56 ARG A 14 0.15 SIDE CHAIN REMARK 500 57 ARG A 14 0.26 SIDE CHAIN REMARK 500 58 ARG A 14 0.31 SIDE CHAIN REMARK 500 61 ARG A 14 0.17 SIDE CHAIN REMARK 500 62 ARG A 14 0.30 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 84 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34412 RELATED DB: BMRB REMARK 900 WINTER FLOUNDER 3 IN SDS MICELLES DBREF 6RZ1 A 1 24 UNP Q90VW7 PLE3_PSEAM 23 46 SEQRES 1 A 24 PHE LEU GLY ALA LEU ILE LYS GLY ALA ILE HIS GLY GLY SEQRES 2 A 24 ARG PHE ILE HIS GLY MET ILE GLN ASN HIS HIS CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1