HEADER CHAPERONE 13-JUN-19 6RZQ TITLE PLASMODIUM FALCIPARUM HSP70-X CHAPERONE NUCLEOTIDE BINDING DOMAIN - TITLE 2 ANP-PNP BOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN 70; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HSP70-X; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PF3D7_0831700; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MALARIA EXPORTED CHAPERONE INTRA-ERYTHROCYTIC AMP-PNP, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR I.VAKONAKIS,J.DAY REVDAT 4 24-JAN-24 6RZQ 1 LINK REVDAT 3 11-DEC-19 6RZQ 1 JRNL REVDAT 2 13-NOV-19 6RZQ 1 JRNL REVDAT 1 02-OCT-19 6RZQ 0 JRNL AUTH J.DAY,A.PASSECKER,H.P.BECK,I.VAKONAKIS JRNL TITL THEPLASMODIUM FALCIPARUMHSP70-X CHAPERONE ASSISTS THE HEAT JRNL TITL 2 STRESS RESPONSE OF THE MALARIA PARASITE. JRNL REF FASEB J. V. 33 14611 2019 JRNL REFN ESSN 1530-6860 JRNL PMID 31690116 JRNL DOI 10.1096/FJ.201901741R REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 74723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5491 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE SET COUNT : 258 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5829 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 357 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.74000 REMARK 3 B22 (A**2) : 4.55000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.710 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6060 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5723 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8174 ; 1.491 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13338 ; 1.296 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 768 ; 5.814 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;33.784 ;23.784 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1092 ;12.312 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;17.941 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 820 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6701 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1158 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3048 ; 4.123 ; 5.106 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3047 ; 4.123 ; 5.104 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3803 ; 5.523 ; 7.630 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3804 ; 5.522 ; 7.632 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3012 ; 5.118 ; 5.705 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3013 ; 5.117 ; 5.706 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4365 ; 7.499 ; 8.281 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6490 ; 9.101 ;60.059 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6430 ; 9.093 ;59.914 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 33 414 B 33 414 11539 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 43.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5MKR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% W/V PEG 1500 20% V/V GLYCEROL, PH REMARK 280 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.14500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.88500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.88500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.14500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 ALA A 29 REMARK 465 GLU A 30 REMARK 465 GLU A 31 REMARK 465 SER A 32 REMARK 465 ASP A 216 REMARK 465 LYS A 217 REMARK 465 LYS A 218 REMARK 465 LYS A 220 REMARK 465 ALA A 418 REMARK 465 VAL A 419 REMARK 465 GLY B 27 REMARK 465 PRO B 28 REMARK 465 ALA B 29 REMARK 465 GLU B 30 REMARK 465 GLU B 31 REMARK 465 SER B 32 REMARK 465 GLY B 219 REMARK 465 LYS B 220 REMARK 465 GLY B 281 REMARK 465 GLN B 415 REMARK 465 SER B 416 REMARK 465 SER B 417 REMARK 465 ALA B 418 REMARK 465 VAL B 419 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 379 O2 GOL A 503 1.99 REMARK 500 O2 GOL B 505 O HOH B 601 2.07 REMARK 500 O1B ANP A 502 O HOH A 601 2.08 REMARK 500 OE1 GLU A 299 O HOH A 602 2.10 REMARK 500 O1B ANP B 502 O HOH B 602 2.11 REMARK 500 O HOH A 625 O HOH A 722 2.11 REMARK 500 O HOH A 603 O HOH A 737 2.13 REMARK 500 OD2 ASP A 39 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 379 OG SER B 127 3655 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 91 51.17 -147.90 REMARK 500 LYS A 392 16.52 -145.14 REMARK 500 ASN A 395 115.80 -34.89 REMARK 500 ASN B 91 50.46 -148.99 REMARK 500 LYS B 217 36.27 -92.13 REMARK 500 ASN B 279 32.62 -140.00 REMARK 500 PHE B 319 -83.67 -126.10 REMARK 500 ASP B 320 61.80 -101.02 REMARK 500 LYS B 392 14.00 -145.15 REMARK 500 ASN B 395 115.64 -36.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 502 O3G REMARK 620 2 HOH A 603 O 118.6 REMARK 620 3 HOH A 737 O 84.4 47.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP B 502 O3G REMARK 620 2 HOH B 695 O 83.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 DBREF 6RZQ A 29 419 UNP K7NTP5 K7NTP5_PLAF7 29 419 DBREF 6RZQ B 29 419 UNP K7NTP5 K7NTP5_PLAF7 29 419 SEQADV 6RZQ GLY A 27 UNP K7NTP5 EXPRESSION TAG SEQADV 6RZQ PRO A 28 UNP K7NTP5 EXPRESSION TAG SEQADV 6RZQ GLY B 27 UNP K7NTP5 EXPRESSION TAG SEQADV 6RZQ PRO B 28 UNP K7NTP5 EXPRESSION TAG SEQRES 1 A 393 GLY PRO ALA GLU GLU SER GLU VAL ALA ILE GLY ILE ASP SEQRES 2 A 393 LEU GLY THR THR TYR SER CYS VAL GLY ILE CYS ARG ASN SEQRES 3 A 393 GLY VAL VAL ASP ILE ILE ALA ASN ASP GLN GLY ASN ARG SEQRES 4 A 393 THR THR PRO SER TYR VAL ALA PHE THR ASP THR GLU ARG SEQRES 5 A 393 LEU ILE GLY ASP ALA ALA LYS ASN GLN ALA SER ARG ASN SEQRES 6 A 393 PRO GLU ASN THR VAL PHE ASP ALA LYS ARG LEU ILE GLY SEQRES 7 A 393 ARG LYS PHE SER GLU THR THR VAL GLN SER ASP MET LYS SEQRES 8 A 393 HIS TRP PRO PHE THR VAL LYS GLY GLY SER ASP GLY LYS SEQRES 9 A 393 PRO MET ILE GLU VAL SER TYR GLN GLY GLU LYS LYS THR SEQRES 10 A 393 PHE HIS PRO GLU GLU ILE SER SER MET VAL LEU LYS LYS SEQRES 11 A 393 MET LYS GLU VAL ALA GLU THR TYR LEU GLY LYS PRO VAL SEQRES 12 A 393 LYS ASN ALA VAL ILE THR VAL PRO ALA TYR PHE ASN ASP SEQRES 13 A 393 SER GLN ARG GLN ALA THR LYS ASP ALA GLY ALA ILE ALA SEQRES 14 A 393 GLY LEU ASN VAL LEU ARG ILE ILE ASN GLU PRO THR ALA SEQRES 15 A 393 ALA ALA ILE ALA TYR GLY LEU ASP LYS LYS GLY LYS GLY SEQRES 16 A 393 GLU GLN ASN ILE LEU ILE PHE ASP LEU GLY GLY GLY THR SEQRES 17 A 393 PHE ASP VAL SER LEU LEU THR LEU GLU ASP GLY ILE PHE SEQRES 18 A 393 GLU VAL LYS ALA THR SER GLY ASP THR HIS LEU GLY GLY SEQRES 19 A 393 GLU ASP PHE ASP ASN LYS LEU VAL ASN PHE CYS VAL GLN SEQRES 20 A 393 ASP PHE LYS LYS LYS ASN GLY GLY LYS ASP VAL SER LYS SEQRES 21 A 393 ASN SER LYS SER LEU ARG ARG LEU ARG THR GLN CYS GLU SEQRES 22 A 393 LYS ALA LYS ARG VAL LEU SER SER SER ALA GLN ALA THR SEQRES 23 A 393 ILE GLU VAL ASP SER LEU PHE ASP GLY ILE ASP TYR ASN SEQRES 24 A 393 VAL ASN ILE THR ARG ALA LYS PHE GLU GLU LEU CYS MET SEQRES 25 A 393 ASP GLN PHE ARG ASN THR LEU ILE PRO VAL GLU LYS VAL SEQRES 26 A 393 LEU LYS ASP ALA LYS MET ASP LYS SER GLN VAL HIS GLU SEQRES 27 A 393 ILE VAL LEU VAL GLY GLY SER THR ARG ILE PRO LYS ILE SEQRES 28 A 393 GLN GLN LEU ILE LYS ASP PHE PHE ASN GLY LYS GLU PRO SEQRES 29 A 393 CSX LYS ALA ILE ASN PRO ASP GLU ALA VAL ALA TYR GLY SEQRES 30 A 393 ALA ALA VAL GLN ALA ALA ILE LEU SER GLY ASP GLN SER SEQRES 31 A 393 SER ALA VAL SEQRES 1 B 393 GLY PRO ALA GLU GLU SER GLU VAL ALA ILE GLY ILE ASP SEQRES 2 B 393 LEU GLY THR THR TYR SER CYS VAL GLY ILE CYS ARG ASN SEQRES 3 B 393 GLY VAL VAL ASP ILE ILE ALA ASN ASP GLN GLY ASN ARG SEQRES 4 B 393 THR THR PRO SER TYR VAL ALA PHE THR ASP THR GLU ARG SEQRES 5 B 393 LEU ILE GLY ASP ALA ALA LYS ASN GLN ALA SER ARG ASN SEQRES 6 B 393 PRO GLU ASN THR VAL PHE ASP ALA LYS ARG LEU ILE GLY SEQRES 7 B 393 ARG LYS PHE SER GLU THR THR VAL GLN SER ASP MET LYS SEQRES 8 B 393 HIS TRP PRO PHE THR VAL LYS GLY GLY SER ASP GLY LYS SEQRES 9 B 393 PRO MET ILE GLU VAL SER TYR GLN GLY GLU LYS LYS THR SEQRES 10 B 393 PHE HIS PRO GLU GLU ILE SER SER MET VAL LEU LYS LYS SEQRES 11 B 393 MET LYS GLU VAL ALA GLU THR TYR LEU GLY LYS PRO VAL SEQRES 12 B 393 LYS ASN ALA VAL ILE THR VAL PRO ALA TYR PHE ASN ASP SEQRES 13 B 393 SER GLN ARG GLN ALA THR LYS ASP ALA GLY ALA ILE ALA SEQRES 14 B 393 GLY LEU ASN VAL LEU ARG ILE ILE ASN GLU PRO THR ALA SEQRES 15 B 393 ALA ALA ILE ALA TYR GLY LEU ASP LYS LYS GLY LYS GLY SEQRES 16 B 393 GLU GLN ASN ILE LEU ILE PHE ASP LEU GLY GLY GLY THR SEQRES 17 B 393 PHE ASP VAL SER LEU LEU THR LEU GLU ASP GLY ILE PHE SEQRES 18 B 393 GLU VAL LYS ALA THR SER GLY ASP THR HIS LEU GLY GLY SEQRES 19 B 393 GLU ASP PHE ASP ASN LYS LEU VAL ASN PHE CYS VAL GLN SEQRES 20 B 393 ASP PHE LYS LYS LYS ASN GLY GLY LYS ASP VAL SER LYS SEQRES 21 B 393 ASN SER LYS SER LEU ARG ARG LEU ARG THR GLN CYS GLU SEQRES 22 B 393 LYS ALA LYS ARG VAL LEU SER SER SER ALA GLN ALA THR SEQRES 23 B 393 ILE GLU VAL ASP SER LEU PHE ASP GLY ILE ASP TYR ASN SEQRES 24 B 393 VAL ASN ILE THR ARG ALA LYS PHE GLU GLU LEU CYS MET SEQRES 25 B 393 ASP GLN PHE ARG ASN THR LEU ILE PRO VAL GLU LYS VAL SEQRES 26 B 393 LEU LYS ASP ALA LYS MET ASP LYS SER GLN VAL HIS GLU SEQRES 27 B 393 ILE VAL LEU VAL GLY GLY SER THR ARG ILE PRO LYS ILE SEQRES 28 B 393 GLN GLN LEU ILE LYS ASP PHE PHE ASN GLY LYS GLU PRO SEQRES 29 B 393 CSX LYS ALA ILE ASN PRO ASP GLU ALA VAL ALA TYR GLY SEQRES 30 B 393 ALA ALA VAL GLN ALA ALA ILE LEU SER GLY ASP GLN SER SEQRES 31 B 393 SER ALA VAL MODRES 6RZQ CSX A 391 CYS MODIFIED RESIDUE MODRES 6RZQ CSX B 391 CYS MODIFIED RESIDUE HET CSX A 391 11 HET CSX B 391 7 HET MG A 501 1 HET ANP A 502 31 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET MG B 501 1 HET ANP B 502 31 HET GOL B 503 6 HET GOL B 504 6 HET GOL B 505 6 HETNAM CSX S-OXY CYSTEINE HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSX 2(C3 H7 N O3 S) FORMUL 3 MG 2(MG 2+) FORMUL 4 ANP 2(C10 H17 N6 O12 P3) FORMUL 5 GOL 8(C3 H8 O3) FORMUL 15 HOH *357(H2 O) HELIX 1 AA1 GLY A 81 GLN A 87 1 7 HELIX 2 AA2 ALA A 88 GLU A 93 5 6 HELIX 3 AA3 ASP A 98 LEU A 102 5 5 HELIX 4 AA4 GLU A 109 MET A 116 1 8 HELIX 5 AA5 LYS A 117 TRP A 119 5 3 HELIX 6 AA6 HIS A 145 GLY A 166 1 22 HELIX 7 AA7 ASN A 181 ALA A 195 1 15 HELIX 8 AA8 GLU A 205 TYR A 213 1 9 HELIX 9 AA9 GLY A 259 ASN A 279 1 21 HELIX 10 AB1 ASP A 283 LYS A 286 5 4 HELIX 11 AB2 ASN A 287 LEU A 305 1 19 HELIX 12 AB3 ARG A 330 CYS A 337 1 8 HELIX 13 AB4 CYS A 337 ASN A 343 1 7 HELIX 14 AB5 THR A 344 ALA A 355 1 12 HELIX 15 AB6 ASP A 358 VAL A 362 5 5 HELIX 16 AB7 GLY A 369 ARG A 373 5 5 HELIX 17 AB8 ILE A 374 PHE A 385 1 12 HELIX 18 AB9 GLU A 398 LEU A 411 1 14 HELIX 19 AC1 GLY B 81 GLN B 87 1 7 HELIX 20 AC2 ALA B 88 GLU B 93 5 6 HELIX 21 AC3 ASP B 98 LEU B 102 5 5 HELIX 22 AC4 GLU B 109 MET B 116 1 8 HELIX 23 AC5 LYS B 117 TRP B 119 5 3 HELIX 24 AC6 HIS B 145 GLY B 166 1 22 HELIX 25 AC7 ASN B 181 ALA B 195 1 15 HELIX 26 AC8 GLU B 205 TYR B 213 1 9 HELIX 27 AC9 GLY B 259 GLY B 280 1 22 HELIX 28 AD1 ASP B 283 LYS B 286 5 4 HELIX 29 AD2 ASN B 287 LEU B 305 1 19 HELIX 30 AD3 ARG B 330 CYS B 337 1 8 HELIX 31 AD4 CYS B 337 ASN B 343 1 7 HELIX 32 AD5 THR B 344 ALA B 355 1 12 HELIX 33 AD6 ASP B 358 VAL B 362 5 5 HELIX 34 AD7 GLY B 369 ARG B 373 5 5 HELIX 35 AD8 ILE B 374 PHE B 385 1 12 HELIX 36 AD9 GLU B 398 LEU B 411 1 14 SHEET 1 AA1 3 VAL A 54 ILE A 57 0 SHEET 2 AA1 3 TYR A 44 ARG A 51 -1 N ILE A 49 O ASP A 56 SHEET 3 AA1 3 THR A 67 PRO A 68 -1 O THR A 67 N SER A 45 SHEET 1 AA2 5 VAL A 54 ILE A 57 0 SHEET 2 AA2 5 TYR A 44 ARG A 51 -1 N ILE A 49 O ASP A 56 SHEET 3 AA2 5 ALA A 35 ASP A 39 -1 N GLY A 37 O GLY A 48 SHEET 4 AA2 5 ASN A 171 VAL A 176 1 O VAL A 173 N ILE A 38 SHEET 5 AA2 5 ASN A 198 ASN A 204 1 O LEU A 200 N ALA A 172 SHEET 1 AA3 3 ARG A 78 ILE A 80 0 SHEET 2 AA3 3 VAL A 71 PHE A 73 -1 N ALA A 72 O LEU A 79 SHEET 3 AA3 3 THR A 95 VAL A 96 -1 O VAL A 96 N VAL A 71 SHEET 1 AA4 3 THR A 122 GLY A 125 0 SHEET 2 AA4 3 PRO A 131 TYR A 137 -1 O GLU A 134 N THR A 122 SHEET 3 AA4 3 GLU A 140 PHE A 144 -1 O PHE A 144 N ILE A 133 SHEET 1 AA5 4 ILE A 246 ASP A 255 0 SHEET 2 AA5 4 PHE A 235 GLU A 243 -1 N VAL A 237 O SER A 253 SHEET 3 AA5 4 GLN A 223 LEU A 230 -1 N ILE A 227 O SER A 238 SHEET 4 AA5 4 GLU A 364 VAL A 368 1 O VAL A 366 N LEU A 226 SHEET 1 AA6 2 GLN A 310 PHE A 319 0 SHEET 2 AA6 2 ILE A 322 THR A 329 -1 O ILE A 328 N ALA A 311 SHEET 1 AA7 3 VAL B 54 ILE B 57 0 SHEET 2 AA7 3 TYR B 44 ARG B 51 -1 N ILE B 49 O ASP B 56 SHEET 3 AA7 3 THR B 67 PRO B 68 -1 O THR B 67 N SER B 45 SHEET 1 AA8 5 VAL B 54 ILE B 57 0 SHEET 2 AA8 5 TYR B 44 ARG B 51 -1 N ILE B 49 O ASP B 56 SHEET 3 AA8 5 ALA B 35 ASP B 39 -1 N GLY B 37 O GLY B 48 SHEET 4 AA8 5 ASN B 171 VAL B 176 1 O VAL B 173 N ILE B 38 SHEET 5 AA8 5 ASN B 198 ASN B 204 1 O LEU B 200 N ALA B 172 SHEET 1 AA9 3 ARG B 78 ILE B 80 0 SHEET 2 AA9 3 VAL B 71 PHE B 73 -1 N ALA B 72 O LEU B 79 SHEET 3 AA9 3 THR B 95 VAL B 96 -1 O VAL B 96 N VAL B 71 SHEET 1 AB1 3 THR B 122 GLY B 125 0 SHEET 2 AB1 3 PRO B 131 TYR B 137 -1 O GLU B 134 N THR B 122 SHEET 3 AB1 3 GLU B 140 PHE B 144 -1 O PHE B 144 N ILE B 133 SHEET 1 AB2 4 ILE B 246 ASP B 255 0 SHEET 2 AB2 4 PHE B 235 GLU B 243 -1 N VAL B 237 O SER B 253 SHEET 3 AB2 4 ASN B 224 LEU B 230 -1 N ILE B 227 O SER B 238 SHEET 4 AB2 4 GLU B 364 VAL B 368 1 O VAL B 366 N LEU B 226 SHEET 1 AB3 2 GLN B 310 VAL B 315 0 SHEET 2 AB3 2 TYR B 324 THR B 329 -1 O ILE B 328 N ALA B 311 LINK C PRO A 390 N CSX A 391 1555 1555 1.34 LINK C CSX A 391 N LYS A 392 1555 1555 1.33 LINK C PRO B 390 N CSX B 391 1555 1555 1.33 LINK C CSX B 391 N LYS B 392 1555 1555 1.34 LINK MG MG A 501 O3G ANP A 502 1555 1555 2.16 LINK MG MG A 501 O HOH A 603 1555 1555 2.50 LINK MG MG A 501 O HOH A 737 1555 1555 2.79 LINK MG MG B 501 O3G ANP B 502 1555 1555 2.07 LINK MG MG B 501 O HOH B 695 1555 1555 2.43 SITE 1 AC1 6 THR A 42 LYS A 100 THR A 234 ANP A 502 SITE 2 AC1 6 HOH A 603 HOH A 737 SITE 1 AC2 29 ASP A 39 GLY A 41 THR A 42 THR A 43 SITE 2 AC2 29 TYR A 44 GLY A 231 GLY A 232 GLY A 233 SITE 3 AC2 29 THR A 234 GLY A 260 GLU A 299 LYS A 302 SITE 4 AC2 29 ARG A 303 SER A 306 GLY A 369 GLY A 370 SITE 5 AC2 29 SER A 371 ARG A 373 ASP A 397 MG A 501 SITE 6 AC2 29 GOL A 505 HOH A 601 HOH A 669 HOH A 687 SITE 7 AC2 29 HOH A 689 HOH A 692 HOH A 737 HOH A 755 SITE 8 AC2 29 HOH A 782 SITE 1 AC3 5 ARG A 330 GLU A 334 PRO A 375 GLN A 379 SITE 2 AC3 5 HOH A 639 SITE 1 AC4 6 ASP A 61 LYS A 156 GLU A 159 VAL A 160 SITE 2 AC4 6 THR A 163 HOH A 644 SITE 1 AC5 10 TYR A 44 TYR A 70 LYS A 85 GLU A 261 SITE 2 AC5 10 ASP A 264 GLU A 299 LYS A 302 ANP A 502 SITE 3 AC5 10 HOH A 685 HOH A 741 SITE 1 AC6 5 TYR A 179 THR A 252 THR A 256 HOH A 652 SITE 2 AC6 5 HOH A 701 SITE 1 AC7 6 ASN A 64 THR A 66 ARG A 303 HOH A 674 SITE 2 AC7 6 HOH A 683 HOH A 694 SITE 1 AC8 6 THR B 42 LYS B 100 GLU B 205 THR B 234 SITE 2 AC8 6 ANP B 502 HOH B 695 SITE 1 AC9 28 ASP B 39 GLY B 41 THR B 42 THR B 43 SITE 2 AC9 28 TYR B 44 GLY B 231 GLY B 232 GLY B 233 SITE 3 AC9 28 THR B 234 GLY B 260 GLU B 299 LYS B 302 SITE 4 AC9 28 ARG B 303 SER B 306 GLY B 369 GLY B 370 SITE 5 AC9 28 SER B 371 ARG B 373 ASP B 397 MG B 501 SITE 6 AC9 28 GOL B 504 HOH B 602 HOH B 631 HOH B 637 SITE 7 AC9 28 HOH B 644 HOH B 665 HOH B 695 HOH B 730 SITE 1 AD1 4 ARG B 51 TYR B 164 LEU B 165 HOH B 667 SITE 1 AD2 11 TYR B 44 TYR B 70 LYS B 85 GLU B 261 SITE 2 AD2 11 ASP B 264 GLU B 299 LYS B 302 ANP B 502 SITE 3 AD2 11 GOL B 505 HOH B 675 HOH B 684 SITE 1 AD3 6 LYS B 85 ARG B 295 THR B 296 GLU B 299 SITE 2 AD3 6 GOL B 504 HOH B 601 CRYST1 80.290 102.710 103.770 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012455 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009637 0.00000