HEADER IMMUNE SYSTEM 14-JUN-19 6S08 TITLE CRYSTAL STRUCTURE OF PROPERDIN (TSR DOMAINS N1 & 456) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPERDIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COMPLEMENT FACTOR P; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROPERDIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: COMPLEMENT FACTOR P; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CFP, PFC; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293ES; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: CFP, PFC; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293ES KEYWDS INNATE IMMUNITY, COMPLEMENT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.M.VAN DEN BOS,N.M.PEARCE,P.GROS REVDAT 3 29-JUL-20 6S08 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 02-OCT-19 6S08 1 JRNL REVDAT 1 04-SEP-19 6S08 0 JRNL AUTH R.M.VAN DEN BOS,N.M.PEARCE,J.GRANNEMAN,T.H.C.BRONDIJK,P.GROS JRNL TITL INSIGHTS INTO ENHANCED COMPLEMENT ACTIVATION BY STRUCTURES JRNL TITL 2 OF PROPERDIN AND ITS COMPLEX WITH THE C-TERMINAL DOMAIN OF JRNL TITL 3 C3B. JRNL REF FRONT IMMUNOL V. 10 2097 2019 JRNL REFN ESSN 1664-3224 JRNL PMID 31552043 JRNL DOI 10.3389/FIMMU.2019.02097 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 54.5 REMARK 3 NUMBER OF REFLECTIONS : 16544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 879 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 25 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 1.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.347 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.518 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2570 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2137 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3544 ; 1.589 ; 1.720 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5026 ; 1.194 ; 1.626 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 8.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;31.940 ;20.976 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;16.744 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;12.426 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2850 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 522 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 255 A 312 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 RESIDUE RANGE : A 503 A 503 REMARK 3 RESIDUE RANGE : A 504 A 504 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8688 20.9400 -12.7322 REMARK 3 T TENSOR REMARK 3 T11: 0.0296 T22: 0.0575 REMARK 3 T33: 0.0269 T12: 0.0129 REMARK 3 T13: 0.0026 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 3.8716 L22: 3.7877 REMARK 3 L33: 1.3529 L12: 3.4427 REMARK 3 L13: 1.2653 L23: 1.5514 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.0893 S13: -0.1527 REMARK 3 S21: -0.0492 S22: 0.0200 S23: -0.0389 REMARK 3 S31: -0.0597 S32: 0.0620 S33: -0.0271 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 376 REMARK 3 RESIDUE RANGE : A 505 A 505 REMARK 3 RESIDUE RANGE : A 506 A 506 REMARK 3 ORIGIN FOR THE GROUP (A): -32.1018 -15.8222 -0.5275 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0599 REMARK 3 T33: 0.0377 T12: -0.0499 REMARK 3 T13: -0.0044 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.9870 L22: 2.6333 REMARK 3 L33: 1.4203 L12: 2.5511 REMARK 3 L13: -2.3752 L23: -1.5829 REMARK 3 S TENSOR REMARK 3 S11: -0.0647 S12: -0.0497 S13: 0.0520 REMARK 3 S21: -0.0568 S22: 0.0838 S23: -0.0881 REMARK 3 S31: 0.0333 S32: 0.0288 S33: -0.0191 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 377 A 415 REMARK 3 RESIDUE RANGE : A 430 A 463 REMARK 3 RESIDUE RANGE : A 507 A 507 REMARK 3 RESIDUE RANGE : A 508 A 508 REMARK 3 RESIDUE RANGE : A 509 A 509 REMARK 3 ORIGIN FOR THE GROUP (A): -52.5699 1.4092 9.3495 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.0337 REMARK 3 T33: 0.1578 T12: -0.0025 REMARK 3 T13: 0.0633 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.2150 L22: 1.9347 REMARK 3 L33: 0.8131 L12: -0.1908 REMARK 3 L13: -0.6984 L23: -0.1849 REMARK 3 S TENSOR REMARK 3 S11: 0.1973 S12: 0.0627 S13: 0.3085 REMARK 3 S21: 0.1294 S22: 0.0150 S23: 0.4154 REMARK 3 S31: -0.0618 S32: -0.0604 S33: -0.2123 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 416 A 429 REMARK 3 ORIGIN FOR THE GROUP (A): -35.5858 -24.7619 14.8237 REMARK 3 T TENSOR REMARK 3 T11: 0.0503 T22: 0.0707 REMARK 3 T33: 0.0261 T12: -0.0237 REMARK 3 T13: -0.0274 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 6.2428 L22: 6.1199 REMARK 3 L33: 0.4340 L12: -2.1810 REMARK 3 L13: 0.5530 L23: 1.2414 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: 0.0791 S13: -0.2005 REMARK 3 S21: 0.2973 S22: 0.0846 S23: -0.1937 REMARK 3 S31: 0.0755 S32: 0.0445 S33: -0.0867 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): -14.5852 15.6078 -8.5395 REMARK 3 T TENSOR REMARK 3 T11: 0.0129 T22: 0.0555 REMARK 3 T33: 0.0092 T12: -0.0189 REMARK 3 T13: -0.0067 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 4.8191 L22: 4.8034 REMARK 3 L33: 1.6497 L12: -0.2996 REMARK 3 L13: -0.6890 L23: 1.2270 REMARK 3 S TENSOR REMARK 3 S11: -0.0535 S12: -0.1896 S13: 0.0467 REMARK 3 S21: 0.0845 S22: 0.0184 S23: 0.1060 REMARK 3 S31: 0.0308 S32: -0.0723 S33: 0.0351 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 131 REMARK 3 RESIDUE RANGE : B 200 B 200 REMARK 3 RESIDUE RANGE : B 201 B 201 REMARK 3 RESIDUE RANGE : B 202 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): -34.5959 14.8047 2.8700 REMARK 3 T TENSOR REMARK 3 T11: 0.0712 T22: 0.0455 REMARK 3 T33: 0.1590 T12: -0.0316 REMARK 3 T13: 0.0450 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 7.9990 L22: 2.5369 REMARK 3 L33: 5.3324 L12: -2.0112 REMARK 3 L13: -5.8727 L23: 1.7052 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: -0.3290 S13: 0.3622 REMARK 3 S21: 0.2570 S22: 0.0589 S23: 0.1485 REMARK 3 S31: -0.1434 S32: 0.4061 S33: -0.0906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6S08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17424 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 79.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 54.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 8.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 1.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM SULPHATE, PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.99750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.99750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 57.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 254 REMARK 465 SER A 419 REMARK 465 MET A 420 REMARK 465 VAL A 421 REMARK 465 GLU A 422 REMARK 465 GLY A 423 REMARK 465 GLN A 424 REMARK 465 GLU A 467 REMARK 465 GLU A 468 REMARK 465 LEU A 469 REMARK 465 ALA A 470 REMARK 465 ALA A 471 REMARK 465 ALA A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 GLY B 26 REMARK 465 SER B 27 REMARK 465 ALA B 133 REMARK 465 ALA B 134 REMARK 465 ALA B 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ARG A 351 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 413 CG CD CE NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 441 CG CD OE1 OE2 REMARK 470 LYS A 446 CG CD CE NZ REMARK 470 LYS A 462 CG CD CE NZ REMARK 470 GLU A 466 CG CD OE1 OE2 REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLN B 130 CG CD OE1 NE2 REMARK 470 GLN B 131 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 272 C1 FUC C 1 1.40 REMARK 500 CD1 TRP A 385 C1 MAN A 504 1.50 REMARK 500 CD1 TRP A 260 C1 MAN A 505 1.51 REMARK 500 CD1 TRP A 321 C1 MAN A 502 1.51 REMARK 500 CD1 TRP A 263 C1 MAN A 506 1.51 REMARK 500 CD1 TRP A 382 C1 MAN A 503 1.51 REMARK 500 CD1 TRP A 388 C1 MAN A 508 1.51 REMARK 500 CD1 TRP A 324 C1 MAN A 501 1.51 REMARK 500 CD1 TRP B 83 C1 MAN B 200 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 285 25.13 -152.00 REMARK 500 HIS A 286 59.23 -142.92 REMARK 500 HIS A 291 60.30 34.21 REMARK 500 ASN A 331 33.80 73.19 REMARK 500 HIS A 375 18.15 59.44 REMARK 500 LEU A 447 -45.08 -136.95 REMARK 500 CYS B 93 -24.03 -142.32 REMARK 500 ASN B 108 62.68 72.91 REMARK 500 GLN B 131 74.32 -69.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FUC C 1 REMARK 610 MAN A 501 REMARK 610 MAN A 502 REMARK 610 MAN A 503 REMARK 610 MAN A 504 REMARK 610 MAN A 505 REMARK 610 MAN A 506 REMARK 610 MAN A 508 REMARK 610 MAN B 200 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 511 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 335 O REMARK 620 2 GLN A 338 O 72.7 REMARK 620 3 ILE A 340 O 109.2 92.4 REMARK 620 N 1 2 DBREF 6S08 A 256 469 UNP P27918 PROP_HUMAN 256 469 DBREF 6S08 B 26 132 UNP P27918 PROP_HUMAN 26 132 SEQADV 6S08 GLY A 254 UNP P27918 EXPRESSION TAG SEQADV 6S08 SER A 255 UNP P27918 EXPRESSION TAG SEQADV 6S08 ALA A 470 UNP P27918 EXPRESSION TAG SEQADV 6S08 ALA A 471 UNP P27918 EXPRESSION TAG SEQADV 6S08 ALA A 472 UNP P27918 EXPRESSION TAG SEQADV 6S08 HIS A 473 UNP P27918 EXPRESSION TAG SEQADV 6S08 HIS A 474 UNP P27918 EXPRESSION TAG SEQADV 6S08 HIS A 475 UNP P27918 EXPRESSION TAG SEQADV 6S08 HIS A 476 UNP P27918 EXPRESSION TAG SEQADV 6S08 HIS A 477 UNP P27918 EXPRESSION TAG SEQADV 6S08 HIS A 478 UNP P27918 EXPRESSION TAG SEQADV 6S08 ALA B 133 UNP P27918 EXPRESSION TAG SEQADV 6S08 ALA B 134 UNP P27918 EXPRESSION TAG SEQADV 6S08 ALA B 135 UNP P27918 EXPRESSION TAG SEQRES 1 A 225 GLY SER VAL ALA GLY GLY TRP GLY PRO TRP GLY PRO VAL SEQRES 2 A 225 SER PRO CYS PRO VAL THR CYS GLY LEU GLY GLN THR MET SEQRES 3 A 225 GLU GLN ARG THR CYS ASN HIS PRO VAL PRO GLN HIS GLY SEQRES 4 A 225 GLY PRO PHE CYS ALA GLY ASP ALA THR ARG THR HIS ILE SEQRES 5 A 225 CYS ASN THR ALA VAL PRO CYS PRO VAL ASP GLY GLU TRP SEQRES 6 A 225 ASP SER TRP GLY GLU TRP SER PRO CYS ILE ARG ARG ASN SEQRES 7 A 225 MET LYS SER ILE SER CYS GLN GLU ILE PRO GLY GLN GLN SEQRES 8 A 225 SER ARG GLY ARG THR CYS ARG GLY ARG LYS PHE ASP GLY SEQRES 9 A 225 HIS ARG CYS ALA GLY GLN GLN GLN ASP ILE ARG HIS CYS SEQRES 10 A 225 TYR SER ILE GLN HIS CYS PRO LEU LYS GLY SER TRP SER SEQRES 11 A 225 GLU TRP SER THR TRP GLY LEU CYS MET PRO PRO CYS GLY SEQRES 12 A 225 PRO ASN PRO THR ARG ALA ARG GLN ARG LEU CYS THR PRO SEQRES 13 A 225 LEU LEU PRO LYS TYR PRO PRO THR VAL SER MET VAL GLU SEQRES 14 A 225 GLY GLN GLY GLU LYS ASN VAL THR PHE TRP GLY ARG PRO SEQRES 15 A 225 LEU PRO ARG CYS GLU GLU LEU GLN GLY GLN LYS LEU VAL SEQRES 16 A 225 VAL GLU GLU LYS ARG PRO CYS LEU HIS VAL PRO ALA CYS SEQRES 17 A 225 LYS ASP PRO GLU GLU GLU GLU LEU ALA ALA ALA HIS HIS SEQRES 18 A 225 HIS HIS HIS HIS SEQRES 1 B 110 GLY SER ASP PRO VAL LEU CYS PHE THR GLN TYR GLU GLU SEQRES 2 B 110 SER SER GLY LYS CYS LYS GLY LEU LEU GLY GLY GLY VAL SEQRES 3 B 110 SER VAL GLU ASP CYS CYS LEU ASN THR ALA PHE ALA TYR SEQRES 4 B 110 GLN LYS ARG SER GLY GLY LEU CYS GLN PRO CYS ARG SER SEQRES 5 B 110 PRO ARG TRP SER LEU TRP SER THR TRP ALA PRO CYS SER SEQRES 6 B 110 VAL THR CYS SER GLU GLY SER GLN LEU ARG TYR ARG ARG SEQRES 7 B 110 CYS VAL GLY TRP ASN GLY GLN CYS SER GLY LYS VAL ALA SEQRES 8 B 110 PRO GLY THR LEU GLU TRP GLN LEU GLN ALA CYS GLU ASP SEQRES 9 B 110 GLN GLN CYS ALA ALA ALA HET FUC C 1 10 HET BGC C 2 11 HET MAN A 501 11 HET MAN A 502 11 HET MAN A 503 11 HET MAN A 504 11 HET MAN A 505 11 HET MAN A 506 11 HET PGE A 507 10 HET MAN A 508 11 HET NA A 511 1 HET MAN B 200 11 HET FUC B 201 10 HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM PGE TRIETHYLENE GLYCOL HETNAM NA SODIUM ION FORMUL 3 FUC 2(C6 H12 O5) FORMUL 3 BGC C6 H12 O6 FORMUL 4 MAN 8(C6 H12 O6) FORMUL 10 PGE C6 H14 O4 FORMUL 12 NA NA 1+ FORMUL 15 HOH *116(H2 O) HELIX 1 AA1 SER B 52 CYS B 57 1 6 SHEET 1 AA1 2 LEU A 275 GLN A 281 0 SHEET 2 AA1 2 THR A 301 ASN A 307 -1 O HIS A 304 N THR A 278 SHEET 1 AA2 2 GLU A 317 TRP A 318 0 SHEET 2 AA2 2 CYS A 350 ARG A 351 -1 O ARG A 351 N GLU A 317 SHEET 1 AA3 4 GLY A 342 GLY A 347 0 SHEET 2 AA3 4 GLN A 365 SER A 372 -1 O ASP A 366 N ARG A 346 SHEET 3 AA3 4 LYS A 427 TRP A 432 1 O TRP A 432 N TYR A 371 SHEET 4 AA3 4 THR A 417 VAL A 418 -1 N VAL A 418 O LYS A 427 SHEET 1 AA4 4 LEU A 436 ARG A 438 0 SHEET 2 AA4 4 PRO A 377 TRP A 382 1 N LEU A 378 O ARG A 438 SHEET 3 AA4 4 THR A 400 PRO A 409 -1 O THR A 408 N SER A 381 SHEET 4 AA4 4 VAL A 448 PRO A 454 -1 O GLU A 451 N ARG A 403 SHEET 1 AA5 4 LYS B 42 VAL B 51 0 SHEET 2 AA5 4 VAL B 30 GLU B 37 -1 N CYS B 32 O LEU B 47 SHEET 3 AA5 4 ALA B 63 LYS B 66 -1 O ALA B 63 N PHE B 33 SHEET 4 AA5 4 GLY B 69 PRO B 74 -1 O GLN B 73 N TYR B 64 SHEET 1 AA6 3 ARG B 79 TRP B 80 0 SHEET 2 AA6 3 GLU B 95 VAL B 105 -1 O VAL B 105 N ARG B 79 SHEET 3 AA6 3 LEU B 120 GLU B 128 -1 O CYS B 127 N GLY B 96 SSBOND 1 CYS A 269 CYS A 306 1555 1555 2.16 SSBOND 2 CYS A 273 CYS A 312 1555 1555 2.10 SSBOND 3 CYS A 284 CYS A 296 1555 1555 2.11 SSBOND 4 CYS A 327 CYS A 370 1555 1555 2.09 SSBOND 5 CYS A 337 CYS A 376 1555 1555 2.05 SSBOND 6 CYS A 350 CYS A 360 1555 1555 2.13 SSBOND 7 CYS A 391 CYS A 455 1555 1555 2.02 SSBOND 8 CYS A 395 CYS A 461 1555 1555 2.04 SSBOND 9 CYS A 407 CYS A 439 1555 1555 2.09 SSBOND 10 CYS B 32 CYS B 56 1555 1555 2.16 SSBOND 11 CYS B 43 CYS B 72 1555 1555 2.05 SSBOND 12 CYS B 57 CYS B 75 1555 1555 2.08 SSBOND 13 CYS B 89 CYS B 127 1555 1555 2.07 SSBOND 14 CYS B 93 CYS B 132 1555 1555 2.05 SSBOND 15 CYS B 104 CYS B 111 1555 1555 2.09 LINK OG1 THR B 92 C1 FUC B 201 1555 1555 1.44 LINK O3 FUC C 1 C1 BGC C 2 1555 1555 1.43 LINK O ILE A 335 NA NA A 511 1555 1555 2.74 LINK O GLN A 338 NA NA A 511 1555 1555 2.90 LINK O ILE A 340 NA NA A 511 1555 1555 2.78 CISPEP 1 HIS A 286 PRO A 287 0 1.41 CISPEP 2 MET A 392 PRO A 393 0 -7.66 CRYST1 111.995 114.860 39.822 90.00 99.56 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008929 0.000000 0.001504 0.00000 SCALE2 0.000000 0.008706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025465 0.00000