HEADER HYDROLASE 14-JUN-19 6S0I TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI GLYOXALASE II WITH L-TARTRATE IN TITLE 2 THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYACYLGLUTATHIONE HYDROLASE GLOB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYOXALASE II,GLX II; COMPND 5 EC: 3.1.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: GLOB, YAFR, B0212, JW0202; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS METALLO-BETA-LACTAMASE, METAL-ION-BINDING, GLYOXALASE II KEYWDS 2 (HYDROXYACYLGLUTATHIONE HYDROLASE), RIBONUCLEASE KEYWDS 3 Z/HYDROXYACYLGLUTATHIONE HYDROLASE-LIKE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SKORUPSKAITE,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 2 24-JAN-24 6S0I 1 LINK REVDAT 1 15-JUL-20 6S0I 0 JRNL AUTH A.SKORUPSKAITE,M.A.MCDONOUGH,J.BREM,C.J.SCHOFIELD JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI GLYOXALASE II JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 25700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4019 - 4.3419 1.00 1853 156 0.1697 0.2261 REMARK 3 2 4.3419 - 3.4480 1.00 1766 149 0.1394 0.1768 REMARK 3 3 3.4480 - 3.0127 1.00 1736 146 0.1627 0.1844 REMARK 3 4 3.0127 - 2.7374 1.00 1708 145 0.1680 0.1780 REMARK 3 5 2.7374 - 2.5413 1.00 1714 145 0.1580 0.1957 REMARK 3 6 2.5413 - 2.3916 1.00 1700 144 0.1413 0.2055 REMARK 3 7 2.3916 - 2.2718 1.00 1686 142 0.1439 0.1680 REMARK 3 8 2.2718 - 2.1730 1.00 1676 141 0.1493 0.1709 REMARK 3 9 2.1730 - 2.0894 1.00 1702 143 0.1590 0.2066 REMARK 3 10 2.0894 - 2.0173 1.00 1682 142 0.1687 0.1674 REMARK 3 11 2.0173 - 1.9542 1.00 1662 141 0.1687 0.2078 REMARK 3 12 1.9542 - 1.8984 1.00 1700 143 0.1848 0.2234 REMARK 3 13 1.8984 - 1.8484 0.97 1623 138 0.2238 0.2712 REMARK 3 14 1.8484 - 1.8033 0.89 1492 125 0.2490 0.2890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2235 0.9514 -8.4192 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.1584 REMARK 3 T33: 0.1208 T12: 0.0099 REMARK 3 T13: 0.0024 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 3.1421 L22: 1.9627 REMARK 3 L33: 4.8551 L12: 0.1884 REMARK 3 L13: -1.1159 L23: -1.1154 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.2963 S13: 0.0637 REMARK 3 S21: 0.1654 S22: 0.0491 S23: 0.1023 REMARK 3 S31: -0.1430 S32: -0.1776 S33: -0.0679 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3371 -6.5200 -11.0465 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.1860 REMARK 3 T33: 0.1299 T12: 0.0207 REMARK 3 T13: -0.0242 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.5614 L22: 1.9538 REMARK 3 L33: 4.6315 L12: 0.4259 REMARK 3 L13: -0.3184 L23: 0.3135 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.2948 S13: -0.0564 REMARK 3 S21: 0.2435 S22: -0.0200 S23: -0.1085 REMARK 3 S31: 0.1512 S32: 0.2320 S33: 0.0075 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6041 1.3967 -26.4794 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1758 REMARK 3 T33: 0.1351 T12: 0.0157 REMARK 3 T13: -0.0052 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 6.6036 L22: 6.7006 REMARK 3 L33: 2.7631 L12: 5.8083 REMARK 3 L13: 3.5264 L23: 4.2047 REMARK 3 S TENSOR REMARK 3 S11: -0.0998 S12: -0.1920 S13: 0.4214 REMARK 3 S21: -0.1225 S22: -0.0928 S23: 0.2179 REMARK 3 S31: 0.0173 S32: 0.0488 S33: 0.1794 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2043 -4.6742 -30.4598 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.1284 REMARK 3 T33: 0.1319 T12: -0.0183 REMARK 3 T13: -0.0001 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.0872 L22: 1.4526 REMARK 3 L33: 2.2346 L12: -0.2566 REMARK 3 L13: 0.1616 L23: -0.5501 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.0686 S13: -0.0013 REMARK 3 S21: -0.1028 S22: 0.0211 S23: -0.0018 REMARK 3 S31: 0.1559 S32: 0.0659 S33: -0.0588 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1298 -0.8180 -34.5075 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1868 REMARK 3 T33: 0.1879 T12: -0.0235 REMARK 3 T13: -0.0265 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 8.6442 L22: 7.7336 REMARK 3 L33: 6.2578 L12: -7.7313 REMARK 3 L13: -7.3415 L23: 6.7356 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.3292 S13: -0.1252 REMARK 3 S21: -0.1482 S22: -0.1710 S23: 0.2112 REMARK 3 S31: 0.0833 S32: -0.3059 S33: 0.2193 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2853 -6.5846 -30.6825 REMARK 3 T TENSOR REMARK 3 T11: 0.1561 T22: 0.1360 REMARK 3 T33: 0.1430 T12: -0.0193 REMARK 3 T13: -0.0404 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 7.5156 L22: 0.6944 REMARK 3 L33: 4.8778 L12: -0.7762 REMARK 3 L13: -3.2698 L23: 0.1628 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.1031 S13: -0.0938 REMARK 3 S21: -0.0552 S22: 0.0859 S23: -0.0601 REMARK 3 S31: 0.2751 S32: 0.0539 S33: -0.0137 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4432 -5.2504 -46.1837 REMARK 3 T TENSOR REMARK 3 T11: 0.3639 T22: 0.3640 REMARK 3 T33: 0.3370 T12: -0.0034 REMARK 3 T13: 0.1058 T23: -0.0574 REMARK 3 L TENSOR REMARK 3 L11: 6.7448 L22: 5.5390 REMARK 3 L33: 9.5767 L12: -3.8082 REMARK 3 L13: 6.1139 L23: -4.5719 REMARK 3 S TENSOR REMARK 3 S11: 0.2057 S12: 0.7055 S13: 0.5773 REMARK 3 S21: -0.3093 S22: -0.1121 S23: -0.7312 REMARK 3 S31: -0.3753 S32: 0.6921 S33: -0.0662 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4957 0.5822 -37.3277 REMARK 3 T TENSOR REMARK 3 T11: 0.1737 T22: 0.2191 REMARK 3 T33: 0.2229 T12: -0.0425 REMARK 3 T13: 0.0017 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 4.4779 L22: 8.5914 REMARK 3 L33: 6.1418 L12: -5.9662 REMARK 3 L13: 3.2100 L23: -3.2239 REMARK 3 S TENSOR REMARK 3 S11: 0.2418 S12: 0.4434 S13: -0.0547 REMARK 3 S21: -0.4329 S22: -0.1726 S23: -0.0359 REMARK 3 S31: 0.2269 S32: 0.2688 S33: -0.0214 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JAN 26, 2018 REMARK 200 BUILT=20180808 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25769 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.69300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.13 REMARK 200 STARTING MODEL: 6RZ0 REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M SODIUM FORMATE, 0.02M AMMONIUM REMARK 280 ACETATE, 0.02M SODIUM CITRATE TRIBASIC DIHYDRATE, 0.02M SODIUM REMARK 280 POTASSIUM TARTRATE TETRAHYDRATE, 0.02M SODIUM OXAMATE; 0.1 M REMARK 280 SODIUM HEPES AND MOPS (ACID), PH 7.5; 12.5% (V/V) MPD, 12.5% (W/ REMARK 280 V) PEG 1000, 12.5% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.52650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.53350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.82750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.53350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.52650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.82750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CD OE1 OE2 REMARK 470 GLU A 33 CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 GLN A 71 CG CD OE1 NE2 REMARK 470 GLN A 81 CD OE1 NE2 REMARK 470 ASP A 82 CG OD1 OD2 REMARK 470 LYS A 90 CE NZ REMARK 470 LYS A 150 NZ REMARK 470 LYS A 173 CD CE NZ REMARK 470 ARG A 190 NE CZ NH1 NH2 REMARK 470 LYS A 191 CE NZ REMARK 470 LYS A 193 CE NZ REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 ILE A 222 CD1 REMARK 470 GLU A 230 CD OE1 OE2 REMARK 470 GLU A 231 CD OE1 OE2 REMARK 470 THR A 232 OG1 CG2 REMARK 470 LEU A 233 CB CG CD1 CD2 REMARK 470 LEU A 234 CD1 CD2 REMARK 470 GLN A 235 CB CG CD OE1 NE2 REMARK 470 LYS A 247 CE NZ REMARK 470 ARG A 250 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 9 -142.48 56.68 REMARK 500 ASP A 11 25.95 -152.80 REMARK 500 ASP A 57 1.68 -65.72 REMARK 500 GLU A 231 -61.19 -91.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPE A 404 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 53 NE2 REMARK 620 2 HIS A 55 ND1 94.5 REMARK 620 3 HIS A 110 NE2 113.9 83.0 REMARK 620 4 ASP A 127 OD2 93.1 172.3 93.3 REMARK 620 5 HOH A 564 O 110.5 99.9 135.1 78.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 ND1 REMARK 620 2 HIS A 110 NE2 85.9 REMARK 620 3 TLA A 403 O11 106.7 94.9 REMARK 620 4 TLA A 403 O2 97.3 171.2 76.3 REMARK 620 5 TLA A 403 O3 163.2 103.5 86.6 75.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 NE2 REMARK 620 2 ASP A 127 OD2 99.3 REMARK 620 3 HIS A 165 NE2 111.1 103.6 REMARK 620 4 TLA A 403 O3 152.1 86.3 93.8 REMARK 620 5 TLA A 403 O41 96.6 158.6 83.7 73.1 REMARK 620 6 HOH A 564 O 94.6 90.7 147.7 57.8 73.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6RZ0 RELATED DB: PDB REMARK 900 6RZ0 CONTAINS SAME PROTEIN, DIFFERENT CRYSTAL FORM. DBREF 6S0I A 1 251 UNP P0AC84 GLO2_ECOLI 1 251 SEQRES 1 A 251 MET ASN LEU ASN SER ILE PRO ALA PHE ASP ASP ASN TYR SEQRES 2 A 251 ILE TRP VAL LEU ASN ASP GLU ALA GLY ARG CYS LEU ILE SEQRES 3 A 251 VAL ASP PRO GLY ASP ALA GLU PRO VAL LEU ASN ALA ILE SEQRES 4 A 251 ALA ALA ASN ASN TRP GLN PRO GLU ALA ILE PHE LEU THR SEQRES 5 A 251 HIS HIS HIS HIS ASP HIS VAL GLY GLY VAL LYS GLU LEU SEQRES 6 A 251 VAL GLU LYS PHE PRO GLN ILE VAL VAL TYR GLY PRO GLN SEQRES 7 A 251 GLU THR GLN ASP LYS GLY THR THR GLN VAL VAL LYS ASP SEQRES 8 A 251 GLY GLU THR ALA PHE VAL LEU GLY HIS GLU PHE SER VAL SEQRES 9 A 251 ILE ALA THR PRO GLY HIS THR LEU GLY HIS ILE CYS TYR SEQRES 10 A 251 PHE SER LYS PRO TYR LEU PHE CYS GLY ASP THR LEU PHE SEQRES 11 A 251 SER GLY GLY CYS GLY ARG LEU PHE GLU GLY THR ALA SER SEQRES 12 A 251 GLN MET TYR GLN SER LEU LYS LYS LEU SER ALA LEU PRO SEQRES 13 A 251 ASP ASP THR LEU VAL CYS CYS ALA HIS GLU TYR THR LEU SEQRES 14 A 251 SER ASN MET LYS PHE ALA LEU SER ILE LEU PRO HIS ASP SEQRES 15 A 251 LEU SER ILE ASN ASP TYR TYR ARG LYS VAL LYS GLU LEU SEQRES 16 A 251 ARG ALA LYS ASN GLN ILE THR LEU PRO VAL ILE LEU LYS SEQRES 17 A 251 ASN GLU ARG GLN ILE ASN VAL PHE LEU ARG THR GLU ASP SEQRES 18 A 251 ILE ASP LEU ILE ASN VAL ILE ASN GLU GLU THR LEU LEU SEQRES 19 A 251 GLN GLN PRO GLU GLU ARG PHE ALA TRP LEU ARG SER LYS SEQRES 20 A 251 LYS ASP ARG PHE HET ZN A 401 1 HET ZN A 402 2 HET TLA A 403 14 HET EPE A 404 15 HETNAM ZN ZINC ION HETNAM TLA L(+)-TARTARIC ACID HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 2 ZN 2(ZN 2+) FORMUL 4 TLA C4 H6 O6 FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 6 HOH *227(H2 O) HELIX 1 AA1 ASP A 31 ASN A 43 1 13 HELIX 2 AA2 HIS A 55 GLY A 60 1 6 HELIX 3 AA3 GLY A 61 PHE A 69 1 9 HELIX 4 AA4 PRO A 77 GLN A 81 5 5 HELIX 5 AA5 THR A 141 ALA A 154 1 14 HELIX 6 AA6 TYR A 167 LEU A 179 1 13 HELIX 7 AA7 ASP A 182 LYS A 198 1 17 HELIX 8 AA8 LEU A 207 ASN A 214 1 8 HELIX 9 AA9 VAL A 215 ARG A 218 5 4 HELIX 10 AB1 ASP A 221 THR A 232 1 12 HELIX 11 AB2 GLN A 236 ARG A 250 1 15 SHEET 1 AA1 6 ASN A 2 ALA A 8 0 SHEET 2 AA1 6 ASN A 12 ASN A 18 -1 O VAL A 16 N ASN A 4 SHEET 3 AA1 6 ARG A 23 VAL A 27 -1 O LEU A 25 N LEU A 17 SHEET 4 AA1 6 GLN A 45 PHE A 50 1 O PHE A 50 N ILE A 26 SHEET 5 AA1 6 VAL A 73 GLY A 76 1 O TYR A 75 N ILE A 49 SHEET 6 AA1 6 GLN A 87 VAL A 88 1 O GLN A 87 N VAL A 74 SHEET 1 AA2 6 THR A 94 VAL A 97 0 SHEET 2 AA2 6 HIS A 100 ALA A 106 -1 O PHE A 102 N ALA A 95 SHEET 3 AA2 6 ILE A 115 SER A 119 -1 O PHE A 118 N SER A 103 SHEET 4 AA2 6 TYR A 122 GLY A 126 -1 O PHE A 124 N TYR A 117 SHEET 5 AA2 6 LEU A 160 CYS A 163 1 O CYS A 162 N LEU A 123 SHEET 6 AA2 6 VAL A 205 ILE A 206 -1 O VAL A 205 N VAL A 161 SHEET 1 AA3 2 LEU A 129 PHE A 130 0 SHEET 2 AA3 2 GLY A 133 CYS A 134 -1 O GLY A 133 N PHE A 130 LINK NE2 HIS A 53 ZN A ZN A 402 1555 1555 2.52 LINK ND1 HIS A 55 ZN A ZN A 402 1555 1555 2.52 LINK ND1 HIS A 55 ZN B ZN A 402 1555 1555 2.14 LINK NE2 HIS A 58 ZN ZN A 401 1555 1555 2.05 LINK NE2 HIS A 110 ZN A ZN A 402 1555 1555 2.27 LINK NE2 HIS A 110 ZN B ZN A 402 1555 1555 2.51 LINK OD2 ASP A 127 ZN ZN A 401 1555 1555 1.96 LINK OD2 ASP A 127 ZN A ZN A 402 1555 1555 2.47 LINK NE2 HIS A 165 ZN ZN A 401 1555 1555 2.09 LINK ZN ZN A 401 O3 BTLA A 403 1555 1555 2.31 LINK ZN ZN A 401 O41BTLA A 403 1555 1555 2.09 LINK ZN ZN A 401 O AHOH A 564 1555 1555 1.89 LINK ZN B ZN A 402 O11BTLA A 403 1555 1555 2.21 LINK ZN B ZN A 402 O2 BTLA A 403 1555 1555 2.12 LINK ZN B ZN A 402 O3 BTLA A 403 1555 1555 2.41 LINK ZN A ZN A 402 O AHOH A 564 1555 1555 1.82 CISPEP 1 LYS A 120 PRO A 121 0 2.54 CISPEP 2 LEU A 203 PRO A 204 0 -0.47 SITE 1 AC1 7 ASP A 57 HIS A 58 ASP A 127 HIS A 165 SITE 2 AC1 7 ZN A 402 TLA A 403 HOH A 564 SITE 1 AC2 8 HIS A 53 HIS A 55 HIS A 58 HIS A 110 SITE 2 AC2 8 ASP A 127 ZN A 401 TLA A 403 HOH A 564 SITE 1 AC3 15 ASN A 12 HIS A 55 ASP A 57 HIS A 58 SITE 2 AC3 15 HIS A 110 ASP A 127 PHE A 138 HIS A 165 SITE 3 AC3 15 ZN A 401 ZN A 402 HOH A 514 HOH A 564 SITE 4 AC3 15 HOH A 574 HOH A 634 HOH A 655 SITE 1 AC4 6 CYS A 134 SER A 170 ARG A 245 LYS A 248 SITE 2 AC4 6 HOH A 536 HOH A 679 CRYST1 39.053 43.655 159.067 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025606 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006287 0.00000