HEADER HYDROLASE 16-JUN-19 6S0J TITLE STRUCTURE OF ZIKA VIRUS NS3 HELICASE IN COMPLEX WITH ADP-MGF3(H2O)- COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 3 ORGANISM_TAXID: 64320; SOURCE 4 STRAIN: ZIKV/H.SAPIENS/BRAZIL/PE243/2015; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NS3 HELICASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GE,R.W.MOLT JR.,H.T.JENKINS,G.M.BLACKBURN,Y.JIN,A.A.ANTSON REVDAT 2 24-JAN-24 6S0J 1 LINK REVDAT 1 15-JUL-20 6S0J 0 JRNL AUTH M.GE,R.W.MOLT JR.,H.T.JENKINS,G.M.BLACKBURN,Y.JIN,A.A.ANTSON JRNL TITL NEW MFX TRANSITION STATE ANALOG REVEALS THE MOLECULAR JRNL TITL 2 MECHANISM OF ATP HYDROLYSIS BY THE ZIKA VIRUS NS3 HELICASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 63340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3372 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 463 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3563 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3250 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4858 ; 1.586 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7500 ; 1.451 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 6.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;28.466 ;20.266 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;12.391 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.323 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 478 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4076 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 795 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6813 ; 2.248 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66685 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 69.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.98800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JLQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.16 M SODIUM CITRATE AND REMARK 280 9% ETHYLENE GLYCOL, VAPOR DIFFUSION, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.80200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 173 REMARK 465 GLY A 174 REMARK 465 SER A 175 REMARK 465 SER A 176 REMARK 465 ALA A 247 REMARK 465 VAL A 248 REMARK 465 ASN A 249 REMARK 465 VAL A 250 REMARK 465 THR A 251 REMARK 465 HIS A 252 REMARK 465 SER A 253 REMARK 465 GLY A 254 REMARK 465 GLY A 618 REMARK 465 ALA A 619 REMARK 465 ALA A 620 REMARK 465 PHE A 621 REMARK 465 GLY A 622 REMARK 465 VAL A 623 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 183 CG SD CE REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 GLU A 231 CD OE1 OE2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 ILE A 257 CG2 REMARK 470 ILE A 274 CD1 REMARK 470 ARG A 275 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 306 CD OE1 OE2 REMARK 470 ARG A 367 NE CZ NH1 NH2 REMARK 470 LYS A 378 CE NZ REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 GLN A 396 CD OE1 NE2 REMARK 470 LYS A 399 CE NZ REMARK 470 GLU A 402 OE1 OE2 REMARK 470 LYS A 419 CE NZ REMARK 470 GLU A 438 OE1 OE2 REMARK 470 ARG A 509 NE CZ NH1 NH2 REMARK 470 ARG A 525 NE CZ NH1 NH2 REMARK 470 ASP A 574 CG OD1 OD2 REMARK 470 VAL A 576 CG1 REMARK 470 LYS A 587 CD CE NZ REMARK 470 LYS A 607 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 286 CD GLU A 286 OE2 -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 183 79.29 -68.90 REMARK 500 MET A 244 57.21 -112.78 REMARK 500 GLU A 256 76.70 -119.31 REMARK 500 SER A 347 157.43 179.53 REMARK 500 MET A 414 57.58 -106.01 REMARK 500 LYS A 419 58.65 -99.11 REMARK 500 LYS A 591 70.21 -153.71 REMARK 500 CYS A 600 24.75 -143.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1258 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1259 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A1260 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A1261 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1262 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1263 DISTANCE = 6.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 201 OG1 REMARK 620 2 KQB A 701 F1 169.2 REMARK 620 3 ADP A 703 O1B 90.2 95.9 REMARK 620 4 HOH A 817 O 87.3 83.3 96.0 REMARK 620 5 HOH A 871 O 97.7 91.2 89.9 172.3 REMARK 620 6 HOH A 967 O 85.7 88.7 174.3 87.8 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 KQB A 701 MG1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 703 O3B REMARK 620 2 KQB A 701 O1 93.1 REMARK 620 3 KQB A 701 F1 88.3 88.4 REMARK 620 4 KQB A 701 F2 89.8 175.9 94.6 REMARK 620 5 KQB A 701 F3 94.2 85.4 173.5 91.5 REMARK 620 6 HOH A 857 O 175.6 85.3 87.5 92.0 89.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KQB A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 703 DBREF1 6S0J A 183 623 UNP A0A160JCU6_ZIKV DBREF2 6S0J A A0A160JCU6 1685 2125 SEQADV 6S0J MET A 173 UNP A0A160JCU INITIATING METHIONINE SEQADV 6S0J GLY A 174 UNP A0A160JCU EXPRESSION TAG SEQADV 6S0J SER A 175 UNP A0A160JCU EXPRESSION TAG SEQADV 6S0J SER A 176 UNP A0A160JCU EXPRESSION TAG SEQADV 6S0J HIS A 177 UNP A0A160JCU EXPRESSION TAG SEQADV 6S0J HIS A 178 UNP A0A160JCU EXPRESSION TAG SEQADV 6S0J HIS A 179 UNP A0A160JCU EXPRESSION TAG SEQADV 6S0J HIS A 180 UNP A0A160JCU EXPRESSION TAG SEQADV 6S0J HIS A 181 UNP A0A160JCU EXPRESSION TAG SEQADV 6S0J HIS A 182 UNP A0A160JCU EXPRESSION TAG SEQRES 1 A 451 MET GLY SER SER HIS HIS HIS HIS HIS HIS MET LEU LYS SEQRES 2 A 451 LYS LYS GLN LEU THR VAL LEU ASP LEU HIS PRO GLY ALA SEQRES 3 A 451 GLY LYS THR ARG ARG VAL LEU PRO GLU ILE VAL ARG GLU SEQRES 4 A 451 ALA ILE LYS THR ARG LEU ARG THR VAL ILE LEU ALA PRO SEQRES 5 A 451 THR ARG VAL VAL ALA ALA GLU MET GLU GLU ALA LEU ARG SEQRES 6 A 451 GLY LEU PRO VAL ARG TYR MET THR THR ALA VAL ASN VAL SEQRES 7 A 451 THR HIS SER GLY THR GLU ILE VAL ASP LEU MET CYS HIS SEQRES 8 A 451 ALA THR PHE THR SER ARG LEU LEU GLN PRO ILE ARG VAL SEQRES 9 A 451 PRO ASN TYR ASN LEU TYR ILE MET ASP GLU ALA HIS PHE SEQRES 10 A 451 THR ASP PRO SER SER ILE ALA ALA ARG GLY TYR ILE SER SEQRES 11 A 451 THR ARG VAL GLU MET GLY GLU ALA ALA ALA ILE PHE MET SEQRES 12 A 451 THR ALA THR PRO PRO GLY THR ARG ASP ALA PHE PRO ASP SEQRES 13 A 451 SER ASN SER PRO ILE MET ASP THR GLU VAL GLU VAL PRO SEQRES 14 A 451 GLU ARG ALA TRP SER SER GLY PHE ASP TRP VAL THR ASP SEQRES 15 A 451 TYR SER GLY LYS THR VAL TRP PHE VAL PRO SER VAL ARG SEQRES 16 A 451 ASN GLY ASN GLU ILE ALA ALA CYS LEU THR LYS ALA GLY SEQRES 17 A 451 LYS ARG VAL ILE GLN LEU SER ARG LYS THR PHE GLU THR SEQRES 18 A 451 GLU PHE GLN LYS THR LYS HIS GLN GLU TRP ASP PHE VAL SEQRES 19 A 451 VAL THR THR ASP ILE SER GLU MET GLY ALA ASN PHE LYS SEQRES 20 A 451 ALA ASP ARG VAL ILE ASP SER ARG ARG CYS LEU LYS PRO SEQRES 21 A 451 VAL ILE LEU ASP GLY GLU ARG VAL ILE LEU ALA GLY PRO SEQRES 22 A 451 MET PRO VAL THR HIS ALA SER ALA ALA GLN ARG ARG GLY SEQRES 23 A 451 ARG ILE GLY ARG ASN PRO ASN LYS PRO GLY ASP GLU TYR SEQRES 24 A 451 LEU TYR GLY GLY GLY CYS ALA GLU THR ASP GLU ASP HIS SEQRES 25 A 451 ALA HIS TRP LEU GLU ALA ARG MET LEU LEU ASP ASN ILE SEQRES 26 A 451 TYR LEU GLN ASP GLY LEU ILE ALA SER LEU TYR ARG PRO SEQRES 27 A 451 GLU ALA ASP LYS VAL ALA ALA ILE GLU GLY GLU PHE LYS SEQRES 28 A 451 LEU ARG THR GLU GLN ARG LYS THR PHE VAL GLU LEU MET SEQRES 29 A 451 LYS ARG GLY ASP LEU PRO VAL TRP LEU ALA TYR GLN VAL SEQRES 30 A 451 ALA SER ALA GLY ILE THR TYR THR ASP ARG ARG TRP CYS SEQRES 31 A 451 PHE ASP GLY THR THR ASN ASN THR ILE MET GLU ASP SER SEQRES 32 A 451 VAL PRO ALA GLU VAL TRP THR ARG HIS GLY GLU LYS ARG SEQRES 33 A 451 VAL LEU LYS PRO ARG TRP MET ASP ALA ARG VAL CYS SER SEQRES 34 A 451 ASP HIS ALA ALA LEU LYS SER PHE LYS GLU PHE ALA ALA SEQRES 35 A 451 GLY LYS ARG GLY ALA ALA PHE GLY VAL HET KQB A 701 5 HET MG A 702 1 HET ADP A 703 27 HETNAM KQB TRIFLUOROMAGNESATE MONOHYDRATE HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 KQB F3 MG O FORMUL 3 MG MG 2+ FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 HOH *463(H2 O) HELIX 1 AA1 ARG A 203 ARG A 216 1 14 HELIX 2 AA2 THR A 225 LEU A 236 1 12 HELIX 3 AA3 HIS A 263 GLN A 272 1 10 HELIX 4 AA4 ASP A 291 MET A 307 1 17 HELIX 5 AA5 PHE A 349 ASP A 354 1 6 HELIX 6 AA6 SER A 365 ALA A 379 1 15 HELIX 7 AA7 THR A 390 GLN A 401 1 12 HELIX 8 AA8 ASP A 410 MET A 414 5 5 HELIX 9 AA9 THR A 449 GLY A 458 1 10 HELIX 10 AB1 ALA A 485 ASP A 495 1 11 HELIX 11 AB2 TYR A 508 VAL A 515 5 8 HELIX 12 AB3 ARG A 525 ARG A 538 1 14 HELIX 13 AB4 PRO A 542 ALA A 552 1 11 HELIX 14 AB5 ARG A 559 PHE A 563 5 5 HELIX 15 AB6 THR A 566 THR A 570 5 5 HELIX 16 AB7 ASP A 596 CYS A 600 5 5 HELIX 17 AB8 ASP A 602 ALA A 614 1 13 SHEET 1 AA1 6 LEU A 189 LEU A 192 0 SHEET 2 AA1 6 ALA A 311 MET A 315 1 O PHE A 314 N THR A 190 SHEET 3 AA1 6 LEU A 281 ASP A 285 1 N MET A 284 O MET A 315 SHEET 4 AA1 6 THR A 219 ALA A 223 1 N LEU A 222 O ILE A 283 SHEET 5 AA1 6 VAL A 258 CYS A 262 1 O ASP A 259 N THR A 219 SHEET 6 AA1 6 VAL A 241 TYR A 243 1 N ARG A 242 O VAL A 258 SHEET 1 AA2 6 ILE A 333 GLU A 337 0 SHEET 2 AA2 6 ASP A 469 TYR A 473 1 O TYR A 471 N MET A 334 SHEET 3 AA2 6 ARG A 422 ASP A 425 1 N ASP A 425 O LEU A 472 SHEET 4 AA2 6 THR A 359 PHE A 362 1 N PHE A 362 O ILE A 424 SHEET 5 AA2 6 PHE A 405 THR A 408 1 O VAL A 406 N TRP A 361 SHEET 6 AA2 6 VAL A 383 LEU A 386 1 N ILE A 384 O VAL A 407 SHEET 1 AA3 2 ARG A 428 LEU A 435 0 SHEET 2 AA3 2 ARG A 439 PRO A 447 -1 O ALA A 443 N LYS A 431 SHEET 1 AA4 2 MET A 572 GLU A 573 0 SHEET 2 AA4 2 VAL A 576 PRO A 577 -1 O VAL A 576 N GLU A 573 SHEET 1 AA5 2 GLU A 579 TRP A 581 0 SHEET 2 AA5 2 LYS A 587 VAL A 589 -1 O ARG A 588 N VAL A 580 LINK OG1 THR A 201 MG MG A 702 1555 1555 2.09 LINK F1 KQB A 701 MG MG A 702 1555 1555 1.82 LINK MG1 KQB A 701 O3B ADP A 703 1555 1555 2.10 LINK MG1 KQB A 701 O HOH A 857 1555 1555 1.96 LINK MG MG A 702 O1B ADP A 703 1555 1555 2.07 LINK MG MG A 702 O HOH A 817 1555 1555 2.10 LINK MG MG A 702 O HOH A 871 1555 1555 2.14 LINK MG MG A 702 O HOH A 967 1555 1555 2.13 CISPEP 1 GLY A 444 PRO A 445 0 8.49 SITE 1 AC1 14 PRO A 196 GLY A 197 LYS A 200 GLU A 286 SITE 2 AC1 14 GLY A 415 ARG A 459 ARG A 462 MG A 702 SITE 3 AC1 14 ADP A 703 HOH A 817 HOH A 832 HOH A 857 SITE 4 AC1 14 HOH A 871 HOH A 967 SITE 1 AC2 6 THR A 201 KQB A 701 ADP A 703 HOH A 817 SITE 2 AC2 6 HOH A 871 HOH A 967 SITE 1 AC3 18 GLY A 197 ALA A 198 GLY A 199 LYS A 200 SITE 2 AC3 18 THR A 201 ARG A 202 ASN A 330 ASN A 417 SITE 3 AC3 18 ARG A 462 KQB A 701 MG A 702 HOH A 817 SITE 4 AC3 18 HOH A 823 HOH A 841 HOH A 871 HOH A 912 SITE 5 AC3 18 HOH A 924 HOH A1041 CRYST1 52.943 69.604 57.751 90.00 94.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018888 0.000000 0.001454 0.00000 SCALE2 0.000000 0.014367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017367 0.00000