HEADER RNA BINDING PROTEIN 18-JUN-19 6S10 TITLE NMR SOLUTION STRUCTURE OF A PROQ HOMOLOG FROM LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA CHAPERONE PROQ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: PROQ_1, PROQ_2, ERS240541_00599, NCTC12024_01603; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS PROQ, RNA BINDING PROTEIN, SRNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.IMMER,C.HACKER,J.WOEHNERT REVDAT 4 14-JUN-23 6S10 1 REMARK REVDAT 3 25-NOV-20 6S10 1 JRNL REVDAT 2 14-OCT-20 6S10 1 JRNL REVDAT 1 08-JUL-20 6S10 0 JRNL AUTH C.IMMER,C.HACKER,J.WOHNERT JRNL TITL SOLUTION STRUCTURE AND RNA-BINDING OF A MINIMAL PROQ-HOMOLOG JRNL TITL 2 FROM LEGIONELLA PNEUMOPHILA (LPP1663). JRNL REF RNA V. 26 2031 2020 JRNL REFN ESSN 1469-9001 JRNL PMID 32989045 JRNL DOI 10.1261/RNA.077354.120 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1200011641. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 400 UM [U-15N] LPP1663, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 2 MM BETA- REMARK 210 MERCAPTOETHANOL, 50 UM DSS, 90% REMARK 210 H2O/10% D2O; 400 UM [U-13C; U- REMARK 210 15N] LPP1663, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 2 MM BETA- REMARK 210 MERCAPTOETHANOL, 50 UM DSS, 90% REMARK 210 H2O/10% D2O; 400 UM [U-15N]-LYS REMARK 210 LPP1663, 50 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 2 MM REMARK 210 BETA-MERCAPTOETHANOL, 50 UM DSS, REMARK 210 90% H2O/10% D2O; 400 UM [U-15N]- REMARK 210 TYR LPP1663, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 2 MM BETA- REMARK 210 MERCAPTOETHANOL, 50 UM DSS, 90% REMARK 210 H2O/10% D2O; 400 UM [U-15N]-PHE; REMARK 210 [U-13C]-PRO LPP1663, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 2 MM BETA- REMARK 210 MERCAPTOETHANOL, 50 UM DSS, 90% REMARK 210 H2O/10% D2O; 400 UM [U-13C; U- REMARK 210 15N] LPP1663, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 2 MM BETA- REMARK 210 MERCAPTOETHANOL, 50 UM DSS, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HCACO; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D H(CCO)NH; 3D C(CO)NH; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CARA, CCPNMR ANALYSIS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 14 LYS A 30 CA LYS A 30 CB 0.236 REMARK 500 14 LYS A 30 CB LYS A 30 CG 0.222 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 ARG A 86 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 14 GLU A 22 N - CA - CB ANGL. DEV. = -21.6 DEGREES REMARK 500 14 GLU A 22 N - CA - C ANGL. DEV. = 21.2 DEGREES REMARK 500 14 GLU A 22 CA - C - N ANGL. DEV. = -16.8 DEGREES REMARK 500 14 ASN A 23 C - N - CA ANGL. DEV. = 20.0 DEGREES REMARK 500 14 PHE A 24 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 14 LYS A 30 N - CA - CB ANGL. DEV. = 15.1 DEGREES REMARK 500 14 LYS A 30 CA - CB - CG ANGL. DEV. = 19.9 DEGREES REMARK 500 17 LEU A 53 CB - CG - CD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 19 LEU A 53 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 8 154.46 61.51 REMARK 500 1 THR A 9 -74.79 -149.14 REMARK 500 1 LYS A 10 -74.23 -140.27 REMARK 500 1 ALA A 27 117.26 -169.62 REMARK 500 1 LYS A 39 150.00 -49.92 REMARK 500 1 PRO A 57 -76.81 -81.93 REMARK 500 1 GLN A 80 108.96 -40.20 REMARK 500 1 ALA A 85 87.01 58.21 REMARK 500 2 ALA A 8 -125.48 -148.14 REMARK 500 2 THR A 9 -93.61 -79.96 REMARK 500 2 LYS A 11 137.61 88.61 REMARK 500 2 PRO A 25 23.13 -78.03 REMARK 500 2 ALA A 27 119.25 -177.41 REMARK 500 2 THR A 55 74.30 -156.88 REMARK 500 2 GLN A 80 93.09 -37.54 REMARK 500 2 ALA A 85 94.23 59.97 REMARK 500 2 LYS A 117 -157.65 -119.15 REMARK 500 3 ASN A 7 -94.29 -179.47 REMARK 500 3 ALA A 8 -94.88 -64.92 REMARK 500 3 THR A 9 -71.88 -159.29 REMARK 500 3 LYS A 10 -22.13 -140.64 REMARK 500 3 PRO A 25 23.41 -75.31 REMARK 500 3 ALA A 27 118.44 -179.62 REMARK 500 3 LYS A 39 150.05 -49.03 REMARK 500 3 GLN A 80 93.90 -19.36 REMARK 500 3 ASP A 83 69.75 35.81 REMARK 500 3 ALA A 85 103.18 61.17 REMARK 500 3 LYS A 116 -160.73 -76.10 REMARK 500 4 SER A 2 118.79 -173.42 REMARK 500 4 LEU A 6 76.20 -156.85 REMARK 500 4 LYS A 11 79.52 53.92 REMARK 500 4 PRO A 25 47.10 -77.05 REMARK 500 4 ALA A 27 118.14 -178.09 REMARK 500 4 LYS A 31 5.10 -54.91 REMARK 500 4 PRO A 57 -153.42 -77.65 REMARK 500 4 PHE A 58 170.54 -56.25 REMARK 500 4 GLN A 80 97.49 -36.79 REMARK 500 4 ASP A 83 74.35 55.86 REMARK 500 4 ALA A 85 96.32 63.24 REMARK 500 4 LYS A 116 -103.63 -74.40 REMARK 500 4 LEU A 121 -118.92 67.08 REMARK 500 5 ASN A 3 -175.45 59.25 REMARK 500 5 GLN A 4 -86.90 -134.33 REMARK 500 5 ASN A 7 164.11 53.95 REMARK 500 5 LYS A 10 -67.85 -157.28 REMARK 500 5 PRO A 25 20.04 -74.09 REMARK 500 5 ALA A 27 119.58 174.76 REMARK 500 5 THR A 55 80.98 -162.01 REMARK 500 5 GLN A 80 94.70 -32.91 REMARK 500 5 ALA A 85 81.19 57.88 REMARK 500 REMARK 500 THIS ENTRY HAS 206 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 52 0.08 SIDE CHAIN REMARK 500 1 TYR A 76 0.09 SIDE CHAIN REMARK 500 1 ARG A 86 0.09 SIDE CHAIN REMARK 500 2 ARG A 108 0.10 SIDE CHAIN REMARK 500 3 ARG A 112 0.10 SIDE CHAIN REMARK 500 4 TYR A 106 0.07 SIDE CHAIN REMARK 500 5 TYR A 69 0.07 SIDE CHAIN REMARK 500 5 ARG A 86 0.09 SIDE CHAIN REMARK 500 5 ARG A 108 0.09 SIDE CHAIN REMARK 500 8 TYR A 50 0.07 SIDE CHAIN REMARK 500 8 ARG A 86 0.11 SIDE CHAIN REMARK 500 10 ARG A 86 0.08 SIDE CHAIN REMARK 500 11 ARG A 112 0.10 SIDE CHAIN REMARK 500 11 TYR A 113 0.07 SIDE CHAIN REMARK 500 12 TYR A 50 0.07 SIDE CHAIN REMARK 500 12 TYR A 70 0.09 SIDE CHAIN REMARK 500 13 TYR A 76 0.07 SIDE CHAIN REMARK 500 14 PHE A 28 0.09 SIDE CHAIN REMARK 500 14 TYR A 76 0.08 SIDE CHAIN REMARK 500 14 ARG A 112 0.22 SIDE CHAIN REMARK 500 17 TYR A 50 0.07 SIDE CHAIN REMARK 500 17 ARG A 52 0.09 SIDE CHAIN REMARK 500 19 TYR A 109 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 14 GLU A 22 25.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27453 RELATED DB: BMRB DBREF1 6S10 A 3 122 UNP A0A131MWN1_LEGPN DBREF2 6S10 A A0A131MWN1 2 121 SEQADV 6S10 GLY A 1 UNP A0A131MWN EXPRESSION TAG SEQADV 6S10 SER A 2 UNP A0A131MWN EXPRESSION TAG SEQRES 1 A 122 GLY SER ASN GLN GLN LEU ASN ALA THR LYS LYS ASP LYS SEQRES 2 A 122 LEU GLN VAL ILE ASP TRP LEU ILE GLU ASN PHE PRO ASN SEQRES 3 A 122 ALA PHE PHE LYS LYS GLY ASN GLN VAL LYS PRO LEU LYS SEQRES 4 A 122 ILE GLY ILE PHE ASP ASP LEU ILE ASP PHE TYR GLU ARG SEQRES 5 A 122 LEU ASP THR PRO PRO PHE SER LYS LYS SER LEU ARG GLU SEQRES 6 A 122 ALA LEU SER TYR TYR SER ALA SER PRO ALA TYR LEU SER SEQRES 7 A 122 CYS GLN LYS PRO ASP THR ALA ARG VAL ASP ILE TYR GLY SEQRES 8 A 122 ASN GLU VAL ASP VAL VAL THR PRO GLU GLN ALA LYS TYR SEQRES 9 A 122 ALA TYR GLN ARG TYR GLN GLU ARG TYR GLY ASN LYS LYS SEQRES 10 A 122 SER GLN ASP LEU LYS HELIX 1 AA1 LYS A 11 PHE A 24 1 14 HELIX 2 AA2 LYS A 31 VAL A 35 5 5 HELIX 3 AA3 GLY A 41 GLU A 51 1 11 HELIX 4 AA4 SER A 59 ALA A 72 1 14 HELIX 5 AA5 SER A 73 CYS A 79 1 7 HELIX 6 AA6 THR A 98 TYR A 104 1 7 HELIX 7 AA7 TYR A 104 GLY A 114 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1