HEADER HYDROLASE 18-JUN-19 6S16 TITLE T. THERMOPHILUS RUVC IN COMPLEX WITH HOLLIDAY JUNCTION SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HOLLIDAY JUNCTION NUCLEASE RUVC,HOLLIDAY JUNCTION RESOLVASE COMPND 5 RUVC; COMPND 6 EC: 3.1.22.4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (33-MER); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*AP*TP*CP*TP*GP*CP*CP*GP*AP*TP*TP*C)-3'); COMPND 14 CHAIN: D, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 ATCC: 27634; SOURCE 6 GENE: RUVC, TTHA1090; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS RUVC RESOLVASE HOLLIDAY JUNCTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.GORECKA,M.KREPL,A.SZLACHCIC,J.POZNANSKI,J.SPONER,M.NOWOTNY REVDAT 2 24-JAN-24 6S16 1 REMARK REVDAT 1 25-SEP-19 6S16 0 JRNL AUTH K.M.GORECKA,M.KREPL,A.SZLACHCIC,J.POZNANSKI,J.SPONER, JRNL AUTH 2 M.NOWOTNY JRNL TITL RUVC USES DYNAMIC PROBING OF THE HOLLIDAY JUNCTION TO JRNL TITL 2 ACHIEVE SEQUENCE SPECIFICITY AND EFFICIENT RESOLUTION. JRNL REF NAT COMMUN V. 10 4102 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31506434 JRNL DOI 10.1038/S41467-019-11900-8 REMARK 2 REMARK 2 RESOLUTION. 3.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 5.8240 0.99 2497 132 0.1658 0.2060 REMARK 3 2 5.8240 - 4.6252 1.00 2414 127 0.1911 0.2295 REMARK 3 3 4.6252 - 4.0413 1.00 2384 125 0.1520 0.1971 REMARK 3 4 4.0413 - 3.6721 1.00 2381 126 0.2103 0.2994 REMARK 3 5 3.6721 - 3.4091 0.99 2351 123 0.2756 0.3735 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3660 REMARK 3 ANGLE : 1.165 5216 REMARK 3 CHIRALITY : 0.057 606 REMARK 3 PLANARITY : 0.007 474 REMARK 3 DIHEDRAL : 19.651 1955 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.895000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12660 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M AMMONIUM PHOSPHATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.85400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.42700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.42700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.85400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 22 REMARK 465 LYS A 23 REMARK 465 GLY A 24 REMARK 465 ALA A 25 REMARK 465 HIS A 117 REMARK 465 GLY A 118 REMARK 465 HIS A 119 REMARK 465 ALA A 120 REMARK 465 ALA A 121 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLU B 21 REMARK 465 GLY B 22 REMARK 465 DT D 13 REMARK 465 DG D 14 REMARK 465 DG D 15 REMARK 465 DT D 16 REMARK 465 DT D 17 REMARK 465 DT D 18 REMARK 465 DC D 19 REMARK 465 DC D 20 REMARK 465 DA D 21 REMARK 465 DG D 22 REMARK 465 DA D 23 REMARK 465 DA D 24 REMARK 465 DA D 25 REMARK 465 DG D 26 REMARK 465 DC D 27 REMARK 465 DC D 28 REMARK 465 DG D 29 REMARK 465 DA D 30 REMARK 465 DT D 31 REMARK 465 DT D 32 REMARK 465 DG D 33 REMARK 465 DA F 1 REMARK 465 DT F 2 REMARK 465 DC F 3 REMARK 465 DT F 4 REMARK 465 DG F 5 REMARK 465 DC F 6 REMARK 465 DC F 7 REMARK 465 DG F 8 REMARK 465 DA F 9 REMARK 465 DT F 10 REMARK 465 DT F 11 REMARK 465 DC F 12 REMARK 465 DT F 13 REMARK 465 DG F 14 REMARK 465 DG F 15 REMARK 465 DT F 16 REMARK 465 DT F 17 REMARK 465 DT F 18 REMARK 465 DC F 19 REMARK 465 DC F 20 REMARK 465 DA F 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 NE2 REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 LEU A 26 CG CD1 CD2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 ARG A 29 CZ NH1 NH2 REMARK 470 LYS A 37 CE NZ REMARK 470 ARG A 63 CZ NH1 NH2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 VAL A 125 CG1 CG2 REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 132 CG1 CG2 CD1 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 164 CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LEU B 26 CG CD1 CD2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 PHE B 73 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 GLN B 112 CG CD OE1 NE2 REMARK 470 HIS B 117 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 119 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 LEU B 127 CG CD1 CD2 REMARK 470 ILE B 132 CG1 CG2 CD1 REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 DT C 17 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT C 17 C7 C6 REMARK 470 DG F 22 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 11 OP2 DC F 27 2.12 REMARK 500 O LYS A 37 NH2 ARG A 50 2.18 REMARK 500 ND2 ASN A 78 OD1 ASN B 78 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 1 O3' DC C 1 C3' -0.043 REMARK 500 DA C 2 O3' DA C 2 C3' -0.044 REMARK 500 DG C 20 O3' DG C 20 C3' -0.056 REMARK 500 DA D 1 O3' DA D 1 C3' -0.053 REMARK 500 DC F 27 O3' DC F 27 C3' -0.059 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 9 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 13 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 15 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT C 18 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 31 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA C 32 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT D 4 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT D 11 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA F 25 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA F 30 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 32 147.28 -174.46 REMARK 500 GLU A 34 149.11 -172.24 REMARK 500 ARG A 61 -70.32 -58.90 REMARK 500 ARG A 63 63.93 37.19 REMARK 500 ALA A 115 87.85 -154.03 REMARK 500 LEU A 133 -64.76 -99.87 REMARK 500 LEU B 26 89.78 -67.18 REMARK 500 GLU B 34 146.42 -172.43 REMARK 500 PRO B 40 9.04 -57.73 REMARK 500 ARG B 63 67.93 33.07 REMARK 500 LYS B 136 -72.80 -58.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 DBREF 6S16 A 1 166 UNP Q5SJC4 RUVC_THET8 1 166 DBREF 6S16 B 1 166 UNP Q5SJC4 RUVC_THET8 1 166 DBREF 6S16 C 1 33 PDB 6S16 6S16 1 33 DBREF 6S16 D 1 33 PDB 6S16 6S16 1 33 DBREF 6S16 F 1 33 PDB 6S16 6S16 1 33 SEQADV 6S16 GLY A -2 UNP Q5SJC4 EXPRESSION TAG SEQADV 6S16 PRO A -1 UNP Q5SJC4 EXPRESSION TAG SEQADV 6S16 HIS A 0 UNP Q5SJC4 EXPRESSION TAG SEQADV 6S16 GLY B -2 UNP Q5SJC4 EXPRESSION TAG SEQADV 6S16 PRO B -1 UNP Q5SJC4 EXPRESSION TAG SEQADV 6S16 HIS B 0 UNP Q5SJC4 EXPRESSION TAG SEQRES 1 A 169 GLY PRO HIS MET VAL VAL ALA GLY ILE ASP PRO GLY ILE SEQRES 2 A 169 THR HIS LEU GLY LEU GLY VAL VAL ALA VAL GLU GLY LYS SEQRES 3 A 169 GLY ALA LEU LYS ALA ARG LEU LEU HIS GLY GLU VAL VAL SEQRES 4 A 169 LYS THR SER PRO GLN GLU PRO ALA LYS GLU ARG VAL GLY SEQRES 5 A 169 ARG ILE HIS ALA ARG VAL LEU GLU VAL LEU HIS ARG PHE SEQRES 6 A 169 ARG PRO GLU ALA VAL ALA VAL GLU GLU GLN PHE PHE TYR SEQRES 7 A 169 ARG GLN ASN GLU LEU ALA TYR LYS VAL GLY TRP ALA LEU SEQRES 8 A 169 GLY ALA VAL LEU VAL ALA ALA PHE GLU ALA GLY VAL PRO SEQRES 9 A 169 VAL TYR ALA TYR GLY PRO MET GLN VAL LYS GLN ALA LEU SEQRES 10 A 169 ALA GLY HIS GLY HIS ALA ALA LYS GLU GLU VAL ALA LEU SEQRES 11 A 169 MET VAL ARG GLY ILE LEU GLY LEU LYS GLU ALA PRO ARG SEQRES 12 A 169 PRO SER HIS LEU ALA ASP ALA LEU ALA ILE ALA LEU THR SEQRES 13 A 169 HIS ALA PHE TYR ALA ARG MET GLY THR ALA LYS PRO LEU SEQRES 1 B 169 GLY PRO HIS MET VAL VAL ALA GLY ILE ASP PRO GLY ILE SEQRES 2 B 169 THR HIS LEU GLY LEU GLY VAL VAL ALA VAL GLU GLY LYS SEQRES 3 B 169 GLY ALA LEU LYS ALA ARG LEU LEU HIS GLY GLU VAL VAL SEQRES 4 B 169 LYS THR SER PRO GLN GLU PRO ALA LYS GLU ARG VAL GLY SEQRES 5 B 169 ARG ILE HIS ALA ARG VAL LEU GLU VAL LEU HIS ARG PHE SEQRES 6 B 169 ARG PRO GLU ALA VAL ALA VAL GLU GLU GLN PHE PHE TYR SEQRES 7 B 169 ARG GLN ASN GLU LEU ALA TYR LYS VAL GLY TRP ALA LEU SEQRES 8 B 169 GLY ALA VAL LEU VAL ALA ALA PHE GLU ALA GLY VAL PRO SEQRES 9 B 169 VAL TYR ALA TYR GLY PRO MET GLN VAL LYS GLN ALA LEU SEQRES 10 B 169 ALA GLY HIS GLY HIS ALA ALA LYS GLU GLU VAL ALA LEU SEQRES 11 B 169 MET VAL ARG GLY ILE LEU GLY LEU LYS GLU ALA PRO ARG SEQRES 12 B 169 PRO SER HIS LEU ALA ASP ALA LEU ALA ILE ALA LEU THR SEQRES 13 B 169 HIS ALA PHE TYR ALA ARG MET GLY THR ALA LYS PRO LEU SEQRES 1 C 33 DC DA DA DT DC DG DG DC DT DT DT DG DA SEQRES 2 C 33 DC DC DT DT DT DG DG DT DC DA DA DT DC SEQRES 3 C 33 DG DG DC DA DG DA DT SEQRES 1 D 33 DA DT DC DT DG DC DC DG DA DT DT DC DT SEQRES 2 D 33 DG DG DT DT DT DC DC DA DG DA DA DA DG SEQRES 3 D 33 DC DC DG DA DT DT DG SEQRES 1 F 33 DA DT DC DT DG DC DC DG DA DT DT DC DT SEQRES 2 F 33 DG DG DT DT DT DC DC DA DG DA DA DA DG SEQRES 3 F 33 DC DC DG DA DT DT DG HET NA A 201 1 HET CL B 201 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 6 NA NA 1+ FORMUL 7 CL CL 1- FORMUL 8 HOH *3(H2 O) HELIX 1 AA1 PRO A 43 ARG A 63 1 21 HELIX 2 AA2 GLN A 77 GLY A 99 1 23 HELIX 3 AA3 GLY A 106 GLN A 112 1 7 HELIX 4 AA4 GLU A 123 GLY A 134 1 12 HELIX 5 AA5 PRO A 141 MET A 160 1 20 HELIX 6 AA6 PRO B 43 ARG B 63 1 21 HELIX 7 AA7 GLN B 77 GLY B 99 1 23 HELIX 8 AA8 GLY B 106 ALA B 115 1 10 HELIX 9 AA9 ALA B 121 GLY B 134 1 14 HELIX 10 AB1 PRO B 141 MET B 160 1 20 SHEET 1 AA1 5 ALA A 28 LYS A 37 0 SHEET 2 AA1 5 HIS A 12 VAL A 20 -1 N LEU A 15 O GLU A 34 SHEET 3 AA1 5 MET A 1 ASP A 7 -1 N GLY A 5 O GLY A 16 SHEET 4 AA1 5 VAL A 67 GLU A 70 1 O ALA A 68 N ALA A 4 SHEET 5 AA1 5 VAL A 102 TYR A 105 1 O TYR A 103 N VAL A 69 SHEET 1 AA2 5 ARG B 29 LYS B 37 0 SHEET 2 AA2 5 HIS B 12 ALA B 19 -1 N LEU B 15 O GLU B 34 SHEET 3 AA2 5 VAL B 2 ASP B 7 -1 N GLY B 5 O GLY B 16 SHEET 4 AA2 5 ALA B 66 GLU B 70 1 O ALA B 66 N ALA B 4 SHEET 5 AA2 5 VAL B 102 TYR B 105 1 O TYR B 103 N VAL B 69 CISPEP 1 ARG A 140 PRO A 141 0 -5.87 CISPEP 2 ARG B 140 PRO B 141 0 6.57 SITE 1 AC1 3 VAL A 102 LEU A 166 PRO B 43 SITE 1 AC2 2 SER B 142 HIS B 143 CRYST1 108.066 108.066 133.281 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009254 0.005343 0.000000 0.00000 SCALE2 0.000000 0.010685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007503 0.00000