HEADER HYDROLASE 19-JUN-19 6S1W TITLE CRYSTAL STRUCTURE OF DIMERIC M-PMV PROTEASE D26N MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAG-PRO-POL POLYPROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: PR180; COMPND 5 EC: 3.6.1.23,3.4.23.-,2.7.7.49,2.7.7.7,3.1.26.4,2.7.7.-,3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: GAPS IN THE SEQUENCE INDICATE RESIDUES THAT WERE NOT COMPND 9 MODELED BECAUSE OF POOR ELECTRON DENSITY. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MASON-PFIZER MONKEY VIRUS; SOURCE 3 ORGANISM_COMMON: MPMV; SOURCE 4 ORGANISM_TAXID: 11855; SOURCE 5 GENE: GAG-PRO-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBPS13ATG KEYWDS MASON-PFIZER MONKEY VIRUS, M-PMV, RETROVIRUS, RETROPEPSIN, ASPARTIC KEYWDS 2 PROTEASE, DIMERIZATION, FLAP STRUCTURE, APO, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WOSICKI,M.GILSKI,M.JASKOLSKI,H.ZABRANSKA,I.PICHOVA REVDAT 2 24-JAN-24 6S1W 1 REMARK REVDAT 1 16-OCT-19 6S1W 0 JRNL AUTH S.WOSICKI,M.GILSKI,H.ZABRANSKA,I.PICHOVA,M.JASKOLSKI JRNL TITL COMPARISON OF A RETROVIRAL PROTEASE IN MONOMERIC AND DIMERIC JRNL TITL 2 STATES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 904 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31588922 JRNL DOI 10.1107/S2059798319011355 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.KHATIB,F.DIMAIO,S.COOPER,M.KAZMIERCZYK,M.GILSKI,S.KRZYWDA, REMARK 1 AUTH 2 H.ZABRANSKA,I.PICHOVA,J.THOMPSON,Z.POPOVIC,M.JASKOLSKI, REMARK 1 AUTH 3 D.BAKER REMARK 1 TITL CRYSTAL STRUCTURE OF A MONOMERIC RETROVIRAL PROTEASE SOLVED REMARK 1 TITL 2 BY PROTEIN FOLDING GAME PLAYERS. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 18 1175 2011 REMARK 1 REFN ESSN 1545-9985 REMARK 1 PMID 21926992 REMARK 1 DOI 10.1038/NSMB.2119 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.GILSKI,M.KAZMIERCZYK,S.KRZYWDA,H.ZABRANSKA,S.COOPER, REMARK 1 AUTH 2 Z.POPOVIC,F.KHATIB,F.DIMAIO,J.THOMPSON,D.BAKER,I.PICHOVA, REMARK 1 AUTH 3 M.JASKOLSKI REMARK 1 TITL HIGH-RESOLUTION STRUCTURE OF A RETROVIRAL PROTEASE FOLDED AS REMARK 1 TITL 2 A MONOMER. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 67 907 2011 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22101816 REMARK 1 DOI 10.1107/S0907444911035943 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.MILLER,M.JASKOLSKI,J.K.RAO,J.LEIS,A.WLODAWER REMARK 1 TITL CRYSTAL STRUCTURE OF A RETROVIRAL PROTEASE PROVES REMARK 1 TITL 2 RELATIONSHIP TO ASPARTIC PROTEASE FAMILY. REMARK 1 REF NATURE V. 337 576 1989 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 2536902 REMARK 1 DOI 10.1038/337576A0 REMARK 1 REFERENCE 4 REMARK 1 AUTH A.WLODAWER,M.MILLER,M.JASKOLSKI,B.K.SATHYANARAYANA, REMARK 1 AUTH 2 E.BALDWIN,I.T.WEBER,L.M.SELK,L.CLAWSON,J.SCHNEIDER,S.B.KENT REMARK 1 TITL CONSERVED FOLDING IN RETROVIRAL PROTEASES: CRYSTAL STRUCTURE REMARK 1 TITL 2 OF A SYNTHETIC HIV-1 PROTEASE. REMARK 1 REF SCIENCE V. 245 616 1989 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 2548279 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 16122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1033 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.18000 REMARK 3 B22 (A**2) : -2.45000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.585 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1733 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1625 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2370 ; 1.839 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3813 ; 1.385 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 209 ; 8.130 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;33.090 ;24.795 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;16.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;14.287 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 234 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1847 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 312 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 834 ; 1.826 ; 2.301 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 833 ; 1.809 ; 2.298 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1039 ; 2.988 ; 3.415 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1040 ; 2.991 ; 3.420 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 899 ; 1.977 ; 2.510 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 900 ; 1.976 ; 2.514 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1330 ; 3.085 ; 3.696 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1943 ; 6.310 ;26.745 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1923 ; 6.257 ;26.331 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 1 108 A 1 108 2886 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8383 -5.5346 21.6498 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.1458 REMARK 3 T33: 0.0659 T12: 0.0804 REMARK 3 T13: -0.0318 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 8.7409 L22: 5.6675 REMARK 3 L33: 3.2397 L12: 4.0124 REMARK 3 L13: 3.8193 L23: 4.1914 REMARK 3 S TENSOR REMARK 3 S11: 0.0949 S12: -0.0292 S13: -0.2610 REMARK 3 S21: 0.5366 S22: 0.0480 S23: -0.1438 REMARK 3 S31: 0.3941 S32: 0.0719 S33: -0.1429 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5942 -4.4991 33.4251 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.1197 REMARK 3 T33: 0.0586 T12: 0.0023 REMARK 3 T13: 0.0192 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.3595 L22: 0.7839 REMARK 3 L33: 6.4781 L12: -0.3074 REMARK 3 L13: -2.1318 L23: 0.2880 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: 0.1607 S13: -0.2023 REMARK 3 S21: 0.0122 S22: -0.2436 S23: 0.0603 REMARK 3 S31: 0.1906 S32: -0.3066 S33: 0.1805 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4886 -1.1603 28.1903 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1342 REMARK 3 T33: 0.0598 T12: -0.0178 REMARK 3 T13: 0.0125 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 2.1945 L22: 2.0299 REMARK 3 L33: 4.8748 L12: 1.4045 REMARK 3 L13: -1.0635 L23: -1.2242 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.1890 S13: -0.1405 REMARK 3 S21: 0.0367 S22: -0.1239 S23: 0.0980 REMARK 3 S31: 0.0271 S32: -0.2757 S33: 0.1408 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0230 1.9231 37.5496 REMARK 3 T TENSOR REMARK 3 T11: 0.0986 T22: 0.2314 REMARK 3 T33: 0.0910 T12: 0.0123 REMARK 3 T13: 0.0316 T23: -0.0748 REMARK 3 L TENSOR REMARK 3 L11: 0.2110 L22: 7.9406 REMARK 3 L33: 0.8759 L12: -1.1556 REMARK 3 L13: 0.4228 L23: -2.1890 REMARK 3 S TENSOR REMARK 3 S11: -0.0587 S12: -0.1012 S13: -0.0127 REMARK 3 S21: 0.2502 S22: 0.0397 S23: 0.2764 REMARK 3 S31: -0.0873 S32: -0.2595 S33: 0.0190 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1690 3.7953 37.4268 REMARK 3 T TENSOR REMARK 3 T11: 0.1192 T22: 0.0802 REMARK 3 T33: 0.0484 T12: -0.0304 REMARK 3 T13: 0.0413 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 7.9437 L22: 1.7221 REMARK 3 L33: 0.9927 L12: -2.3677 REMARK 3 L13: 0.3284 L23: 0.2186 REMARK 3 S TENSOR REMARK 3 S11: -0.1702 S12: 0.0778 S13: -0.0299 REMARK 3 S21: 0.2671 S22: -0.0063 S23: 0.0873 REMARK 3 S31: 0.0130 S32: 0.0082 S33: 0.1766 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1777 2.9732 27.3093 REMARK 3 T TENSOR REMARK 3 T11: 0.2321 T22: 0.1628 REMARK 3 T33: 0.0102 T12: 0.0054 REMARK 3 T13: -0.0118 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.2685 L22: 0.7585 REMARK 3 L33: 1.6117 L12: 0.8345 REMARK 3 L13: -0.7064 L23: -0.0501 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: -0.0762 S13: 0.0982 REMARK 3 S21: 0.0019 S22: 0.0436 S23: 0.0601 REMARK 3 S31: -0.0450 S32: 0.0007 S33: -0.0563 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 9 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5983 10.3697 20.6616 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.0287 REMARK 3 T33: 0.0329 T12: -0.0397 REMARK 3 T13: 0.0002 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 11.4191 L22: 2.6130 REMARK 3 L33: 3.3414 L12: -2.7231 REMARK 3 L13: -2.0989 L23: 1.4209 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: 0.1012 S13: -0.1183 REMARK 3 S21: -0.0141 S22: 0.0221 S23: -0.0419 REMARK 3 S31: -0.1632 S32: 0.1139 S33: -0.1031 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 45 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5316 6.4008 4.4817 REMARK 3 T TENSOR REMARK 3 T11: 0.0121 T22: 0.1673 REMARK 3 T33: 0.0791 T12: 0.0100 REMARK 3 T13: 0.0168 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.4918 L22: 2.4455 REMARK 3 L33: 2.5295 L12: 0.4458 REMARK 3 L13: 0.1115 L23: -0.2372 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.0473 S13: 0.1309 REMARK 3 S21: 0.0746 S22: -0.0356 S23: 0.0672 REMARK 3 S31: -0.1370 S32: -0.1119 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 46 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4819 -3.4553 7.2845 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: 0.2700 REMARK 3 T33: 0.1877 T12: -0.0477 REMARK 3 T13: 0.0092 T23: -0.0874 REMARK 3 L TENSOR REMARK 3 L11: 3.0247 L22: 5.3178 REMARK 3 L33: 7.1516 L12: 3.9132 REMARK 3 L13: 0.6571 L23: -0.4010 REMARK 3 S TENSOR REMARK 3 S11: 0.2385 S12: -0.3200 S13: 0.1396 REMARK 3 S21: 0.2837 S22: -0.3647 S23: 0.2280 REMARK 3 S31: 0.2029 S32: -0.6861 S33: 0.1262 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 64 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8727 1.3603 0.9387 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: 0.1264 REMARK 3 T33: 0.0870 T12: 0.0068 REMARK 3 T13: 0.0037 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 9.5497 L22: 3.2836 REMARK 3 L33: 1.5746 L12: 3.9598 REMARK 3 L13: 2.7234 L23: 2.2688 REMARK 3 S TENSOR REMARK 3 S11: -0.0938 S12: 0.1442 S13: -0.0253 REMARK 3 S21: -0.1114 S22: 0.1036 S23: -0.0366 REMARK 3 S31: -0.0806 S32: 0.0501 S33: -0.0097 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3820 1.7054 8.6623 REMARK 3 T TENSOR REMARK 3 T11: 0.0695 T22: 0.1751 REMARK 3 T33: 0.0919 T12: -0.0048 REMARK 3 T13: 0.0446 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.7140 L22: 0.9326 REMARK 3 L33: 2.5797 L12: -1.1977 REMARK 3 L13: 0.7432 L23: -0.3246 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: 0.0087 S13: -0.1530 REMARK 3 S21: 0.0909 S22: 0.0768 S23: 0.1530 REMARK 3 S31: -0.0215 S32: -0.0207 S33: -0.0175 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 103 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9622 0.7088 23.1317 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.1812 REMARK 3 T33: 0.1135 T12: 0.0990 REMARK 3 T13: 0.0373 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 3.5680 L22: 1.0797 REMARK 3 L33: 10.4639 L12: -0.4799 REMARK 3 L13: 4.6892 L23: -2.6918 REMARK 3 S TENSOR REMARK 3 S11: -0.1866 S12: -0.0927 S13: -0.1726 REMARK 3 S21: 0.0198 S22: -0.0965 S23: -0.2333 REMARK 3 S31: -0.1341 S32: 0.2336 S33: 0.2830 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGEN ATOMS WERE ADDED AT RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6S1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, SI REMARK 200 -111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17123 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 48.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.620 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6S1U, CHAIN A REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 4.1 MG/ML PROTEIN, 5 REMARK 280 MM TCEP, 10 MM TRIS BUFFER PH 7.4; RESERVOIR SOLUTION: 0.1 M REMARK 280 SODIUM CITRATE BUFFER, 15% PROPAN-2-OL, 5 MM TCEP;, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 14.78550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 109 REMARK 465 ASP B 110 REMARK 465 ILE B 111 REMARK 465 VAL B 112 REMARK 465 THR B 113 REMARK 465 ALA B 114 REMARK 465 LEU A 49 REMARK 465 THR A 50 REMARK 465 ASN A 51 REMARK 465 LEU A 52 REMARK 465 ARG A 53 REMARK 465 GLY A 54 REMARK 465 ILE A 55 REMARK 465 GLY A 56 REMARK 465 GLN A 57 REMARK 465 SER A 58 REMARK 465 ASN A 59 REMARK 465 ASN A 109 REMARK 465 ASP A 110 REMARK 465 ILE A 111 REMARK 465 VAL A 112 REMARK 465 THR A 113 REMARK 465 ALA A 114 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 60 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 17 -122.36 49.32 REMARK 500 GLN B 57 -166.19 -128.95 REMARK 500 ASN B 60 50.18 -146.80 REMARK 500 ASP A 17 -118.67 61.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 273 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 274 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 275 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B 276 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH A 251 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 252 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 253 DISTANCE = 6.67 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SQF RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN IN MONOMERIC STATE. REMARK 900 RELATED ID: 3HVP RELATED DB: PDB REMARK 900 CONTAINS HIV-1 PROTEASE IN APO FORM. REMARK 900 RELATED ID: 4HVP RELATED DB: PDB REMARK 900 CONTAINS HIV-1 PROTEASE INHIBITOR COMPLEX. REMARK 900 RELATED ID: 1IVP RELATED DB: PDB REMARK 900 CONTAINS HIV-2 PROTEASE INHIBITOR COMPLEX. REMARK 900 RELATED ID: 1AZ5 RELATED DB: PDB REMARK 900 CONTAINS SIV PROTEASE APO FORM. REMARK 900 RELATED ID: 2RSP RELATED DB: PDB REMARK 900 CONTAINS RSV PROTEASE APO FORM. REMARK 900 RELATED ID: 1BAI RELATED DB: PDB REMARK 900 CONTAINS RSV PROTEASE INHIBITOR COMPLEX. REMARK 900 RELATED ID: 4FIV RELATED DB: PDB REMARK 900 CONTAINS FIV PROTEASE INHIBITOR COMPLEX. REMARK 900 RELATED ID: 2FMB RELATED DB: PDB REMARK 900 CONTAINS EIAV PROTEASE INHIBITOR COMPLEX. REMARK 900 RELATED ID: 3LIY RELATED DB: PDB REMARK 900 CONTAINS HTLV PROTEASE INHIBITOR COMPLEX. REMARK 900 RELATED ID: 3SLZ RELATED DB: PDB REMARK 900 CONTAINS XMRV PROTEASE INHIBITOR COMPLEX. DBREF 6S1W B 1 114 UNP P07572 POL_MPMV 760 873 DBREF 6S1W A 1 114 UNP P07572 POL_MPMV 760 873 SEQADV 6S1W ASN B 26 UNP P07572 ASP 785 ENGINEERED MUTATION SEQADV 6S1W ASN A 26 UNP P07572 ASP 785 ENGINEERED MUTATION SEQRES 1 B 114 TRP VAL GLN PRO ILE THR CYS GLN LYS PRO SER LEU THR SEQRES 2 B 114 LEU TRP LEU ASP ASP LYS MET PHE THR GLY LEU ILE ASN SEQRES 3 B 114 THR GLY ALA ASP VAL THR ILE ILE LYS LEU GLU ASP TRP SEQRES 4 B 114 PRO PRO ASN TRP PRO ILE THR ASP THR LEU THR ASN LEU SEQRES 5 B 114 ARG GLY ILE GLY GLN SER ASN ASN PRO LYS GLN SER SER SEQRES 6 B 114 LYS TYR LEU THR TRP ARG ASP LYS GLU ASN ASN SER GLY SEQRES 7 B 114 LEU ILE LYS PRO PHE VAL ILE PRO ASN LEU PRO VAL ASN SEQRES 8 B 114 LEU TRP GLY ARG ASP LEU LEU SER GLN MET LYS ILE MET SEQRES 9 B 114 MET CYS SER PRO ASN ASP ILE VAL THR ALA SEQRES 1 A 114 TRP VAL GLN PRO ILE THR CYS GLN LYS PRO SER LEU THR SEQRES 2 A 114 LEU TRP LEU ASP ASP LYS MET PHE THR GLY LEU ILE ASN SEQRES 3 A 114 THR GLY ALA ASP VAL THR ILE ILE LYS LEU GLU ASP TRP SEQRES 4 A 114 PRO PRO ASN TRP PRO ILE THR ASP THR LEU THR ASN LEU SEQRES 5 A 114 ARG GLY ILE GLY GLN SER ASN ASN PRO LYS GLN SER SER SEQRES 6 A 114 LYS TYR LEU THR TRP ARG ASP LYS GLU ASN ASN SER GLY SEQRES 7 A 114 LEU ILE LYS PRO PHE VAL ILE PRO ASN LEU PRO VAL ASN SEQRES 8 A 114 LEU TRP GLY ARG ASP LEU LEU SER GLN MET LYS ILE MET SEQRES 9 A 114 MET CYS SER PRO ASN ASP ILE VAL THR ALA FORMUL 3 HOH *129(H2 O) HELIX 1 AA1 GLU B 37 TRP B 39 5 3 HELIX 2 AA2 LEU B 52 GLY B 56 5 5 HELIX 3 AA3 GLY B 94 MET B 101 1 8 HELIX 4 AA4 GLU A 37 TRP A 39 5 3 HELIX 5 AA5 GLY A 94 MET A 101 1 8 SHEET 1 AA1 4 VAL B 2 PRO B 4 0 SHEET 2 AA1 4 MET A 104 CYS A 106 -1 O MET A 105 N GLN B 3 SHEET 3 AA1 4 MET B 104 CYS B 106 -1 N CYS B 106 O MET A 104 SHEET 4 AA1 4 VAL A 2 PRO A 4 -1 O GLN A 3 N MET B 105 SHEET 1 AA2 5 SER B 77 ILE B 80 0 SHEET 2 AA2 5 LEU B 68 ARG B 71 -1 N LEU B 68 O ILE B 80 SHEET 3 AA2 5 SER B 11 LEU B 16 -1 N TRP B 15 O ARG B 71 SHEET 4 AA2 5 LYS B 19 ILE B 25 -1 O PHE B 21 N LEU B 14 SHEET 5 AA2 5 ASN B 91 TRP B 93 1 O TRP B 93 N LEU B 24 SHEET 1 AA3 4 ILE B 33 LYS B 35 0 SHEET 2 AA3 4 PHE B 83 ILE B 85 1 O PHE B 83 N ILE B 34 SHEET 3 AA3 4 LYS B 62 SER B 64 -1 N LYS B 62 O VAL B 84 SHEET 4 AA3 4 ILE B 45 ASP B 47 -1 N THR B 46 O GLN B 63 SHEET 1 AA4 5 SER A 77 ILE A 80 0 SHEET 2 AA4 5 LEU A 68 ARG A 71 -1 N LEU A 68 O ILE A 80 SHEET 3 AA4 5 SER A 11 LEU A 16 -1 N TRP A 15 O ARG A 71 SHEET 4 AA4 5 LYS A 19 ILE A 25 -1 O PHE A 21 N LEU A 14 SHEET 5 AA4 5 ASN A 91 TRP A 93 1 O TRP A 93 N LEU A 24 SHEET 1 AA5 4 ILE A 33 LYS A 35 0 SHEET 2 AA5 4 PHE A 83 ILE A 85 1 O PHE A 83 N ILE A 34 SHEET 3 AA5 4 LYS A 62 SER A 64 -1 N LYS A 62 O VAL A 84 SHEET 4 AA5 4 ILE A 45 THR A 46 -1 N THR A 46 O GLN A 63 CRYST1 49.987 29.571 85.200 90.00 102.52 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020005 0.000000 0.004443 0.00000 SCALE2 0.000000 0.033817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012023 0.00000