HEADER HYDROLASE 19-JUN-19 6S20 TITLE METABOLISM OF MULTIPLE GLYCOSAMINOGLYCANS BY BACTEROIDES TITLE 2 THETAIOTAOMICRON IS ORCHESTRATED BY A VERSATILE CORE GENETIC LOCUS TITLE 3 (BT33336S-SULF) COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGALACTOSAMINE-6-O-SULFATASE; COMPND 3 CHAIN: C; COMPND 4 EC: 3.1.6.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON (STRAIN ATCC 29148 SOURCE 3 / DSM 2079 / NCTC 10582 / E50 / VPI-5482); SOURCE 4 ORGANISM_TAXID: 226186; SOURCE 5 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 6 GENE: BT_3333; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GUT MICROBIOTA, GLYCOSAMINOGLYCAN, GLYCOBIOLOGY, CAZYMES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.NDEH,A.BASLE,H.STRAHL,B.HENRISSAT,N.TERRAPON,A.CARTMELL REVDAT 4 29-JUL-20 6S20 1 COMPND REMARK HETNAM SITE REVDAT 4 2 1 ATOM REVDAT 3 20-MAY-20 6S20 1 TITLE REVDAT 2 19-FEB-20 6S20 1 JRNL REVDAT 1 05-FEB-20 6S20 0 JRNL AUTH D.NDEH,A.BASLE,H.STRAHL,E.A.YATES,U.L.MCCLURGG,B.HENRISSAT, JRNL AUTH 2 N.TERRAPON,A.CARTMELL JRNL TITL METABOLISM OF MULTIPLE GLYCOSAMINOGLYCANS BY BACTEROIDES JRNL TITL 2 THETAIOTAOMICRON IS ORCHESTRATED BY A VERSATILE CORE GENETIC JRNL TITL 3 LOCUS. JRNL REF NAT COMMUN V. 11 646 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32005816 JRNL DOI 10.1038/S41467-020-14509-4 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1396 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2378 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.0000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3664 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.396 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3800 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3384 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5195 ; 1.531 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7862 ; 1.344 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 7.511 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;34.889 ;23.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;13.672 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.983 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 513 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4312 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 761 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1929 ; 2.047 ; 3.024 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1928 ; 2.043 ; 3.022 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2413 ; 2.845 ; 4.526 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2414 ; 2.844 ; 4.528 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1869 ; 2.747 ; 3.271 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1870 ; 2.748 ; 3.275 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2780 ; 3.984 ; 4.808 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4213 ; 5.118 ;36.188 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4206 ; 5.178 ;36.190 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6S20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292103015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32979 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 70.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 4000, 200 MM MGCL2, AND 0.1 M REMARK 280 TRIS, PH 8.5. 20M/GML PROTEIN AND 10 MM GLANAC6S, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.10500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.20000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.55250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.20000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.65750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.55250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.65750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.10500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -1 REMARK 465 GLY C 0 REMARK 465 SER C 1 REMARK 465 SER C 2 REMARK 465 HIS C 3 REMARK 465 HIS C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 HIS C 8 REMARK 465 SER C 9 REMARK 465 SER C 10 REMARK 465 GLY C 11 REMARK 465 LEU C 12 REMARK 465 VAL C 13 REMARK 465 PRO C 14 REMARK 465 ARG C 15 REMARK 465 GLY C 16 REMARK 465 SER C 17 REMARK 465 HIS C 18 REMARK 465 MET C 19 REMARK 465 ALA C 20 REMARK 465 SER C 21 REMARK 465 GLN C 22 REMARK 465 LYS C 23 REMARK 465 VAL C 24 REMARK 465 GLN C 25 REMARK 465 LYS C 26 REMARK 465 ASP C 27 REMARK 465 ASN C 28 REMARK 465 GLY C 29 REMARK 465 GLN C 30 REMARK 465 ASN C 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER C 32 OG REMARK 470 GLN C 33 CG CD OE1 NE2 REMARK 470 LYS C 125 CE NZ REMARK 470 LYS C 144 CG CD CE NZ REMARK 470 ASN C 191 CG OD1 ND2 REMARK 470 ASP C 204 CG OD1 OD2 REMARK 470 LYS C 218 CG CD CE NZ REMARK 470 LYS C 241 CG CD CE NZ REMARK 470 LYS C 266 CG CD CE NZ REMARK 470 GLN C 320 CG CD OE1 NE2 REMARK 470 LYS C 381 CG CD CE NZ REMARK 470 LYS C 386 CG CD CE NZ REMARK 470 LYS C 405 CG CD CE NZ REMARK 470 GLU C 410 CG CD OE1 OE2 REMARK 470 ASP C 411 CG OD1 OD2 REMARK 470 LYS C 426 CG CD CE NZ REMARK 470 ASP C 427 CG OD1 OD2 REMARK 470 GLU C 432 CG CD OE1 OE2 REMARK 470 LYS C 492 CG CD CE NZ REMARK 470 GLU C 496 CG CD OE1 OE2 REMARK 470 GLU C 500 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 248 O HOH C 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C4 PGE C 602 O3 PGE C 602 7554 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE C 104 120.44 -39.12 REMARK 500 TRP C 137 -72.93 -102.20 REMARK 500 ALA C 170 -101.63 -128.78 REMARK 500 ASN C 225 -142.36 -96.86 REMARK 500 ILE C 337 -73.37 -83.23 REMARK 500 LYS C 362 141.19 -39.64 REMARK 500 TYR C 363 -19.73 85.14 REMARK 500 PRO C 409 153.52 -48.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE C 602 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 43 OD1 REMARK 620 2 ASP C 44 OD1 82.2 REMARK 620 3 ASP C 332 OD1 88.1 103.9 REMARK 620 4 ASP C 332 OD2 85.6 152.4 50.8 REMARK 620 5 ASN C 333 OD1 163.6 101.8 75.5 83.8 REMARK 620 6 NG6 C 601 O2S 97.0 90.5 165.2 115.6 98.8 REMARK 620 N 1 2 3 4 5 DBREF 6S20 C 22 511 UNP Q8A2H2 GALSF_BACTN 22 511 SEQADV 6S20 MET C -1 UNP Q8A2H2 INITIATING METHIONINE SEQADV 6S20 GLY C 0 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 SER C 1 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 SER C 2 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 HIS C 3 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 HIS C 4 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 HIS C 5 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 HIS C 6 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 HIS C 7 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 HIS C 8 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 SER C 9 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 SER C 10 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 GLY C 11 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 LEU C 12 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 VAL C 13 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 PRO C 14 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 ARG C 15 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 GLY C 16 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 SER C 17 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 HIS C 18 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 MET C 19 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 ALA C 20 UNP Q8A2H2 EXPRESSION TAG SEQADV 6S20 SER C 21 UNP Q8A2H2 EXPRESSION TAG SEQRES 1 C 513 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 513 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLN LYS VAL SEQRES 3 C 513 GLN LYS ASP ASN GLY GLN ASN SER GLN LYS PRO ASN ILE SEQRES 4 C 513 ILE TYR ILE PHE ALA ASP ASP LEU GLY ILE GLY ASP LEU SEQRES 5 C 513 SER CYS TYR GLY ALA THR LYS VAL SER THR PRO HIS ILE SEQRES 6 C 513 ASP ARG LEU ALA GLY GLN GLY VAL GLN PHE THR ASN ALA SEQRES 7 C 513 TYR ALA THR SER ALA THR SER THR PRO SER ARG PHE GLY SEQRES 8 C 513 LEU LEU THR GLY MET TYR PRO TRP ARG GLN GLU ASN THR SEQRES 9 C 513 GLY ILE ALA PRO GLY ASN SER GLU LEU ILE ILE ASP THR SEQRES 10 C 513 ALA CYS VAL THR MET ALA ASP MET LEU LYS GLU ALA GLY SEQRES 11 C 513 TYR ALA THR GLY VAL VAL GLY LYS TRP HIS LEU GLY LEU SEQRES 12 C 513 GLY PRO LYS GLY GLY THR ASP PHE ASN GLY HIS ILE THR SEQRES 13 C 513 PRO ASN ALA GLN SER ILE GLY PHE ASP TYR GLU PHE VAL SEQRES 14 C 513 ILE PRO ALA THR VAL ASP ARG VAL PRO CYS VAL PHE VAL SEQRES 15 C 513 GLU ASN GLY HIS VAL VAL GLY LEU ASP PRO ASN ASP PRO SEQRES 16 C 513 ILE THR VAL ASN TYR GLU HIS LYS VAL GLY ASP TRP PRO SEQRES 17 C 513 THR GLY GLU GLU ASN PRO GLU LEU VAL LYS LEU LYS PRO SEQRES 18 C 513 SER GLN GLY HIS ASN ASN THR ILE ILE ASN GLY ILE PRO SEQRES 19 C 513 ARG ILE GLY TRP MET THR GLY GLY LYS SER ALA LEU TRP SEQRES 20 C 513 LYS ASP GLU ASP ILE ALA ASP ILE ILE THR ASN LYS ALA SEQRES 21 C 513 LYS SER PHE ILE VAL SER HIS LYS GLU GLU PRO PHE PHE SEQRES 22 C 513 LEU TYR MET GLY THR GLN ASP VAL HIS VAL PRO ARG VAL SEQRES 23 C 513 PRO HIS PRO ARG PHE ALA GLY LYS SER GLY LEU GLY THR SEQRES 24 C 513 ARG GLY ASP VAL ILE LEU GLN LEU ASP TRP THR ILE GLY SEQRES 25 C 513 GLU ILE MET ASN THR LEU ASP SER LEU GLN LEU THR ASP SEQRES 26 C 513 ASN THR ILE LEU ILE PHE THR SER ASP ASN GLY PRO VAL SEQRES 27 C 513 ILE ASP ASP GLY TYR GLN ASP GLN ALA PHE GLU ARG LEU SEQRES 28 C 513 ASN GLY HIS THR PRO MET GLY ILE TYR ARG GLY GLY LYS SEQRES 29 C 513 TYR SER ALA TYR GLU ALA GLY THR ARG ILE PRO PHE ILE SEQRES 30 C 513 VAL ARG TRP PRO ALA LYS VAL LYS PRO ASN LYS GLN GLN SEQRES 31 C 513 ALA LEU PHE SER GLN ILE ASP ILE PHE ALA SER LEU ALA SEQRES 32 C 513 ALA LEU LEU LYS GLN PRO LEU PRO GLU ASP ALA ALA PRO SEQRES 33 C 513 ASP SER GLN GLU HIS LEU ASN THR LEU LEU GLY LYS ASP SEQRES 34 C 513 TYR THR SER ARG GLU TYR ILE VAL GLN GLN ASN LEU ASN SEQRES 35 C 513 ASN THR LEU ALA ILE VAL LYS GLY GLN TRP LYS TYR ILE SEQRES 36 C 513 GLU PRO SER ASP ALA PRO ALA ILE GLU TYR TRP THR LYS SEQRES 37 C 513 MET GLU LEU GLY ASN ASP ARG HIS PRO GLN LEU TYR ASP SEQRES 38 C 513 LEU SER ALA ASP PRO SER GLU LYS ASN ASN VAL ALA LYS SEQRES 39 C 513 GLN HIS PRO GLU VAL VAL ARG GLU LEU SER GLU LEU LEU SEQRES 40 C 513 GLU SER VAL LYS THR ARG HET NG6 C 601 19 HET PGE C 602 9 HET CA C 603 1 HETNAM NG6 2-ACETAMIDO-2-DEOXY-6-O-SULFO-BETA-D-GALACTOPYRANOSE HETNAM PGE TRIETHYLENE GLYCOL HETNAM CA CALCIUM ION FORMUL 2 NG6 C8 H15 N O9 S FORMUL 3 PGE C6 H14 O4 FORMUL 4 CA CA 2+ FORMUL 5 HOH *112(H2 O) HELIX 1 AA1 LEU C 50 GLY C 54 5 5 HELIX 2 AA2 THR C 60 GLY C 70 1 11 HELIX 3 AA3 THR C 82 GLY C 93 1 12 HELIX 4 AA4 TYR C 95 GLN C 99 5 5 HELIX 5 AA5 THR C 119 ALA C 127 1 9 HELIX 6 AA6 ASN C 156 GLY C 161 5 6 HELIX 7 AA7 ASN C 211 VAL C 215 5 5 HELIX 8 AA8 GLY C 240 LEU C 244 5 5 HELIX 9 AA9 LYS C 246 GLU C 248 5 3 HELIX 10 AB1 ASP C 249 HIS C 265 1 17 HELIX 11 AB2 LEU C 295 LEU C 319 1 25 HELIX 12 AB3 TYR C 366 THR C 370 5 5 HELIX 13 AB4 ASP C 395 LEU C 404 1 10 HELIX 14 AB5 HIS C 419 LEU C 424 1 6 HELIX 15 AB6 HIS C 494 ARG C 511 1 18 SHEET 1 AA110 HIS C 184 VAL C 185 0 SHEET 2 AA110 VAL C 180 GLU C 181 -1 N GLU C 181 O HIS C 184 SHEET 3 AA110 TYR C 164 ILE C 168 -1 N VAL C 167 O VAL C 180 SHEET 4 AA110 ALA C 130 LYS C 136 1 N GLY C 135 O PHE C 166 SHEET 5 AA110 PHE C 270 GLY C 275 1 O PHE C 271 N ALA C 130 SHEET 6 AA110 ASN C 36 ALA C 42 1 N TYR C 39 O MET C 274 SHEET 7 AA110 THR C 325 SER C 331 1 O ILE C 326 N ASN C 36 SHEET 8 AA110 PHE C 374 ARG C 377 -1 O ARG C 377 N LEU C 327 SHEET 9 AA110 VAL C 71 PHE C 73 -1 N VAL C 71 O VAL C 376 SHEET 10 AA110 ASN C 385 GLN C 387 1 O GLN C 387 N GLN C 72 SHEET 1 AA2 2 ALA C 76 TYR C 77 0 SHEET 2 AA2 2 PHE C 391 SER C 392 1 O PHE C 391 N TYR C 77 SHEET 1 AA3 2 THR C 195 ASN C 197 0 SHEET 2 AA3 2 TRP C 236 THR C 238 -1 O TRP C 236 N ASN C 197 SHEET 1 AA4 2 ILE C 227 ILE C 228 0 SHEET 2 AA4 2 ILE C 231 PRO C 232 -1 O ILE C 231 N ILE C 228 SHEET 1 AA5 4 ILE C 434 GLN C 437 0 SHEET 2 AA5 4 LEU C 443 LYS C 447 -1 O ALA C 444 N GLN C 436 SHEET 3 AA5 4 TRP C 450 ILE C 453 -1 O TRP C 450 N LYS C 447 SHEET 4 AA5 4 GLN C 476 ASP C 479 -1 O TYR C 478 N LYS C 451 LINK OD1 ASP C 43 CA CA C 603 1555 1555 2.38 LINK OD1 ASP C 44 CA CA C 603 1555 1555 2.28 LINK OD1 ASP C 332 CA CA C 603 1555 1555 2.74 LINK OD2 ASP C 332 CA CA C 603 1555 1555 2.44 LINK OD1 ASN C 333 CA CA C 603 1555 1555 2.46 LINK O2S NG6 C 601 CA CA C 603 1555 1555 2.42 CISPEP 1 THR C 154 PRO C 155 0 -3.43 CISPEP 2 VAL C 175 PRO C 176 0 -1.79 CISPEP 3 ASP C 278 VAL C 279 0 12.29 CISPEP 4 VAL C 281 PRO C 282 0 -7.99 CRYST1 86.400 86.400 122.210 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011574 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011574 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008183 0.00000