HEADER TRANSFERASE 22-JUN-19 6S2T TITLE STRUCTURE OF THE N-TERMINAL CATALYTIC REGION OF T. THERMOPHILUS REL TITLE 2 BOUND TO PPGPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: (P)PPGPP SYNTHETASE I, SPOT/RELA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.6.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: THTHE16_1734; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PPGPP HYDROLASE, PPGPP SYNTHETASE, REL, PPGPP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO REVDAT 4 24-JAN-24 6S2T 1 REMARK REVDAT 3 29-JUL-20 6S2T 1 JRNL REMARK LINK REVDAT 2 15-JUL-20 6S2T 1 JRNL REVDAT 1 08-JUL-20 6S2T 0 JRNL AUTH H.TAMMAN,K.VAN NEROM,H.TAKADA,N.VANDENBERK,D.SCHOLL, JRNL AUTH 2 Y.POLIKANOV,J.HOFKENS,A.TALAVERA,V.HAURYLIUK,J.HENDRIX, JRNL AUTH 3 A.GARCIA-PINO JRNL TITL A NUCLEOTIDE-SWITCH MECHANISM MEDIATES OPPOSING CATALYTIC JRNL TITL 2 ACTIVITIES OF REL ENZYMES. JRNL REF NAT.CHEM.BIOL. V. 16 834 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32393900 JRNL DOI 10.1038/S41589-020-0520-2 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 72.0 REMARK 3 NUMBER OF REFLECTIONS : 14116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 716 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 35 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 16.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 404 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2489 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 380 REMARK 3 BIN R VALUE (WORKING SET) : 0.2429 REMARK 3 BIN FREE R VALUE : 0.3314 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.94 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 24 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2731 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.99520 REMARK 3 B22 (A**2) : 4.99520 REMARK 3 B33 (A**2) : -9.99040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.370 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.800 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.310 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.647 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.305 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2840 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3860 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 987 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 5 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 506 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2840 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 370 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3325 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.35 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.82 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 65.9230 49.4166 19.3346 REMARK 3 T TENSOR REMARK 3 T11: -0.1521 T22: 0.0411 REMARK 3 T33: -0.2106 T12: -0.0230 REMARK 3 T13: 0.0910 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.0409 L22: 1.1512 REMARK 3 L33: 4.0524 L12: -0.0890 REMARK 3 L13: -1.4940 L23: 0.4203 REMARK 3 S TENSOR REMARK 3 S11: 0.3131 S12: 0.0701 S13: 0.3566 REMARK 3 S21: 0.2086 S22: -0.0353 S23: -0.0224 REMARK 3 S31: -0.4737 S32: 0.2241 S33: -0.2778 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292103048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98012 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 92.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 24.80 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 22.60 REMARK 200 R MERGE FOR SHELL (I) : 2.45200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ROSETTA REMARK 200 STARTING MODEL: 1VJ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMATE; 0.2M AMMONIUM REMARK 280 ACETATE; 0.2M SODIUM CITRATE TRIBASIC DIHYDRATE; 0.2M SODIUM REMARK 280 POTASSIUM TARTRATE TETRAHYDRATE; 0.2M SODIUM OXAMATE, SODIUM REMARK 280 HEPES; MOPS (ACID) PH 7.5, 25% V/V MPD; 25% PEG 1000; 25% W/V REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.12600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.06300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 138.18900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.12600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 138.18900 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.06300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 VAL A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 6 CG CD1 CD2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LEU A 116 CG CD1 CD2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 GLU A 119 CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 122 CZ NH1 NH2 REMARK 470 PHE A 130 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 210 CG CD OE1 NE2 REMARK 470 GLN A 213 CG CD OE1 NE2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 HIS A 225 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 LEU A 267 CG CD1 CD2 REMARK 470 GLU A 268 CD OE1 OE2 REMARK 470 LEU A 273 CG CD1 CD2 REMARK 470 ARG A 288 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 339 CG CD1 CD2 REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 9 -58.53 76.89 REMARK 500 GLU A 117 106.36 -52.60 REMARK 500 ILE A 172 -73.58 -102.09 REMARK 500 MET A 182 64.24 -106.61 REMARK 500 GLN A 210 4.71 -64.71 REMARK 500 LYS A 265 170.54 74.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 52 NE2 REMARK 620 2 ASP A 77 OD2 84.7 REMARK 620 3 ASP A 146 OD2 92.5 130.0 REMARK 620 4 G4P A 401 O1C 136.7 127.0 87.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 146 OD1 REMARK 620 2 G4P A 401 O3C 91.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G4P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 407 DBREF 6S2T A 2 355 UNP F6DES6 F6DES6_THETG 2 355 SEQADV 6S2T SER A 1 UNP F6DES6 EXPRESSION TAG SEQRES 1 A 355 SER VAL GLY ALA ASP LEU GLY LEU TRP ASN ARG LEU GLU SEQRES 2 A 355 PRO ALA LEU ALA TYR LEU ALA PRO GLU GLU ARG ALA LYS SEQRES 3 A 355 VAL ARG GLU ALA TYR ARG PHE ALA GLU GLU ALA HIS ARG SEQRES 4 A 355 GLY GLN LEU ARG ARG SER GLY GLU PRO TYR ILE THR HIS SEQRES 5 A 355 PRO VAL ALA VAL ALA GLU ILE LEU ALA GLY LEU GLN MET SEQRES 6 A 355 ASP ALA ASP THR VAL ALA ALA GLY LEU LEU HIS ASP THR SEQRES 7 A 355 LEU GLU ASP CYS GLY VAL ALA PRO GLU GLU LEU GLU ARG SEQRES 8 A 355 ARG PHE GLY PRO THR VAL ARG ARG ILE VAL GLU GLY GLU SEQRES 9 A 355 THR LYS VAL SER LYS LEU TYR LYS LEU ALA ASN LEU GLU SEQRES 10 A 355 GLY GLU GLU ARG ARG ALA GLU ASP LEU ARG GLN MET PHE SEQRES 11 A 355 ILE ALA MET ALA GLU ASP VAL ARG ILE ILE ILE VAL LYS SEQRES 12 A 355 LEU ALA ASP ARG LEU HIS ASN LEU ARG THR LEU GLU HIS SEQRES 13 A 355 MET PRO PRO GLU LYS GLN LYS ARG ILE ALA GLN GLU THR SEQRES 14 A 355 LEU GLU ILE TYR ALA PRO LEU ALA HIS ARG LEU GLY MET SEQRES 15 A 355 GLY GLN LEU LYS TRP GLU LEU GLU ASP LEU SER PHE ARG SEQRES 16 A 355 TYR LEU HIS PRO GLU ALA PHE ALA SER LEU SER ALA ARG SEQRES 17 A 355 ILE GLN ALA THR GLN GLU ALA ARG GLU ARG LEU ILE GLN SEQRES 18 A 355 LYS ALA ILE HIS LEU LEU GLN GLU THR LEU ALA ARG ASP SEQRES 19 A 355 GLU LEU LEU GLN SER GLN LEU GLN GLY PHE GLU VAL THR SEQRES 20 A 355 GLY ARG PRO LYS HIS LEU TYR SER ILE TRP LYS LYS MET SEQRES 21 A 355 GLU ARG GLU GLY LYS THR LEU GLU GLN ILE TYR ASP LEU SEQRES 22 A 355 LEU ALA VAL ARG VAL ILE LEU ASP PRO LYS PRO ALA PRO SEQRES 23 A 355 THR ARG GLU SER GLN ALA LEU ARG GLU LYS GLN VAL CYS SEQRES 24 A 355 TYR HIS VAL LEU GLY LEU VAL HIS ALA LEU TRP GLN PRO SEQRES 25 A 355 ILE PRO GLY ARG VAL LYS ASP TYR ILE ALA VAL PRO LYS SEQRES 26 A 355 PRO ASN GLY TYR GLN SER LEU HIS THR THR VAL ILE ALA SEQRES 27 A 355 LEU GLU GLY LEU PRO LEU GLU VAL GLN ILE ARG THR ARG SEQRES 28 A 355 GLU MET HIS ARG HET G4P A 401 36 HET GOL A 402 6 HET GOL A 403 6 HET MN A 404 1 HET MG A 405 1 HET CL A 406 1 HET NA A 407 1 HETNAM G4P GUANOSINE-5',3'-TETRAPHOSPHATE HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN G4P GUANOSINE TETRAPHOSPHATE;PPGPP HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 G4P C10 H17 N5 O17 P4 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 MN MN 2+ FORMUL 6 MG MG 2+ FORMUL 7 CL CL 1- FORMUL 8 NA NA 1+ FORMUL 9 HOH *114(H2 O) HELIX 1 AA1 LEU A 12 ALA A 17 5 6 HELIX 2 AA2 ALA A 20 HIS A 38 1 19 HELIX 3 AA3 ILE A 50 LEU A 63 1 14 HELIX 4 AA4 ASP A 66 HIS A 76 1 11 HELIX 5 AA5 ALA A 85 ALA A 114 1 30 HELIX 6 AA6 ARG A 121 ALA A 134 1 14 HELIX 7 AA7 VAL A 137 THR A 153 1 17 HELIX 8 AA8 LEU A 154 MET A 157 5 4 HELIX 9 AA9 PRO A 158 ILE A 172 1 15 HELIX 10 AB1 ILE A 172 LEU A 180 1 9 HELIX 11 AB2 MET A 182 HIS A 198 1 17 HELIX 12 AB3 HIS A 198 GLN A 210 1 13 HELIX 13 AB4 THR A 212 ARG A 233 1 22 HELIX 14 AB5 ASP A 234 GLN A 240 1 7 HELIX 15 AB6 HIS A 252 GLU A 263 1 12 HELIX 16 AB7 THR A 287 TRP A 310 1 24 SHEET 1 AA1 5 LEU A 241 GLY A 248 0 SHEET 2 AA1 5 LEU A 274 PRO A 282 -1 O ARG A 277 N THR A 247 SHEET 3 AA1 5 LEU A 342 THR A 350 1 O GLN A 347 N VAL A 278 SHEET 4 AA1 5 LEU A 332 ALA A 338 -1 N ALA A 338 O LEU A 342 SHEET 5 AA1 5 LYS A 318 ASP A 319 -1 N LYS A 318 O HIS A 333 LINK NE2 HIS A 52 MN MN A 404 1555 1555 2.36 LINK OD2 ASP A 77 MN MN A 404 1555 1555 2.27 LINK OD2 ASP A 146 MN MN A 404 1555 1555 2.14 LINK OD1 ASP A 146 MG MG A 405 1555 1555 2.45 LINK O1C G4P A 401 MN MN A 404 1555 1555 2.49 LINK O3C G4P A 401 MG MG A 405 1555 1555 2.92 LINK NA NA A 407 O HOH A 603 1555 8665 2.56 SITE 1 AC1 15 ARG A 43 ARG A 44 TYR A 49 LYS A 143 SITE 2 AC1 15 ASP A 146 ARG A 147 ASN A 150 THR A 153 SITE 3 AC1 15 MET A 157 LYS A 161 ARG A 164 ILE A 165 SITE 4 AC1 15 GOL A 402 MN A 404 MG A 405 SITE 1 AC2 2 G4P A 401 HOH A 513 SITE 1 AC3 5 GLY A 183 LYS A 325 ASN A 327 TYR A 329 SITE 2 AC3 5 HOH A 510 SITE 1 AC4 5 HIS A 52 HIS A 76 ASP A 77 ASP A 146 SITE 2 AC4 5 G4P A 401 SITE 1 AC5 5 LYS A 143 ASP A 146 ARG A 147 ASN A 150 SITE 2 AC5 5 G4P A 401 SITE 1 AC6 3 PRO A 250 HIS A 252 ARG A 277 SITE 1 AC7 1 HOH A 603 CRYST1 87.927 87.927 184.252 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005427 0.00000