HEADER TRANSFERASE 22-JUN-19 6S2U TITLE STRUCTURE OF THE CATALYTIC DOMAIN OF T. THERMOPHILUS REL IN COMPLEX TITLE 2 WITH AMP AND PPGPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: (P)PPGPP SYNTHETASE I, SPOT/RELA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.6.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: THTHE16_1734; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PPGPP SYNTHETASE, PPGPP HYDROLASE, PPGPP, TRANSLATION, STRINGENT KEYWDS 2 RESPONSE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO REVDAT 4 24-JAN-24 6S2U 1 REMARK REVDAT 3 29-JUL-20 6S2U 1 JRNL REMARK REVDAT 2 15-JUL-20 6S2U 1 JRNL REVDAT 1 08-JUL-20 6S2U 0 JRNL AUTH H.TAMMAN,K.VAN NEROM,H.TAKADA,N.VANDENBERK,D.SCHOLL, JRNL AUTH 2 Y.POLIKANOV,J.HOFKENS,A.TALAVERA,V.HAURYLIUK,J.HENDRIX, JRNL AUTH 3 A.GARCIA-PINO JRNL TITL A NUCLEOTIDE-SWITCH MECHANISM MEDIATES OPPOSING CATALYTIC JRNL TITL 2 ACTIVITIES OF REL ENZYMES. JRNL REF NAT.CHEM.BIOL. V. 16 834 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32393900 JRNL DOI 10.1038/S41589-020-0520-2 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 63.2 REMARK 3 NUMBER OF REFLECTIONS : 6572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 330 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 26.06 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 411 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2396 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 382 REMARK 3 BIN R VALUE (WORKING SET) : 0.2312 REMARK 3 BIN FREE R VALUE : 0.3433 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 102.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.59540 REMARK 3 B22 (A**2) : 0.44920 REMARK 3 B33 (A**2) : 3.14620 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 13.12630 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.460 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.528 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2715 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3709 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 921 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 485 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2715 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 360 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3056 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.17 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.46 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 97.0037 -62.0508 97.8665 REMARK 3 T TENSOR REMARK 3 T11: -0.3797 T22: -0.3284 REMARK 3 T33: -0.1954 T12: 0.0416 REMARK 3 T13: 0.1468 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 6.0815 L22: 1.4825 REMARK 3 L33: 6.2821 L12: -1.6979 REMARK 3 L13: -5.5923 L23: 1.7601 REMARK 3 S TENSOR REMARK 3 S11: -0.0439 S12: -0.0675 S13: 0.0307 REMARK 3 S21: 0.2437 S22: -0.0212 S23: -0.1543 REMARK 3 S31: -0.0021 S32: -0.1377 S33: 0.0650 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292103049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6572 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 56.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ROSETTA REMARK 200 STARTING MODEL: 1VJ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.002 M ZINC CHLORIDE 0.1 M TRIS 8.0 REMARK 280 20 % W/V PEG 6000, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.36950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.17300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.36950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.17300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 517 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 VAL A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 113 REMARK 465 ALA A 114 REMARK 465 ASN A 115 REMARK 465 LEU A 116 REMARK 465 GLU A 117 REMARK 465 GLY A 118 REMARK 465 GLU A 119 REMARK 465 GLU A 120 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 8 CG CD1 CD2 REMARK 470 ARG A 44 NE CZ NH1 NH2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 SER A 108 OG REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 LEU A 110 CG CD1 CD2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 ARG A 121 CZ NH1 NH2 REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 LEU A 126 CG CD1 CD2 REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 128 CG CD OE1 NE2 REMARK 470 MET A 129 CG SD CE REMARK 470 MET A 133 CG SD CE REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 VAL A 137 CG1 CG2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 ARG A 179 CD NE CZ NH1 NH2 REMARK 470 GLN A 210 CG CD OE1 NE2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 ARG A 218 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 219 CG CD1 CD2 REMARK 470 ILE A 220 CD1 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 LEU A 236 CG CD1 CD2 REMARK 470 GLN A 240 CG CD OE1 NE2 REMARK 470 ARG A 262 CD NE CZ NH1 NH2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 THR A 266 OG1 CG2 REMARK 470 LEU A 267 CG CD1 CD2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 GLN A 269 CG CD OE1 NE2 REMARK 470 TYR A 271 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 274 CG CD1 CD2 REMARK 470 ARG A 288 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 LEU A 293 CG CD1 CD2 REMARK 470 LEU A 305 CG CD1 CD2 REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 LEU A 342 CG CD1 CD2 REMARK 470 MET A 353 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 76 -17.00 -48.67 REMARK 500 THR A 78 9.35 -66.12 REMARK 500 ASP A 81 21.00 48.56 REMARK 500 LYS A 109 -159.50 52.30 REMARK 500 ASP A 136 144.01 -172.26 REMARK 500 ILE A 172 -63.28 -102.57 REMARK 500 MET A 182 66.37 -103.32 REMARK 500 HIS A 198 78.23 -117.00 REMARK 500 SER A 331 155.90 173.98 REMARK 500 LEU A 339 -130.65 53.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 52 NE2 REMARK 620 2 HIS A 76 NE2 78.2 REMARK 620 3 ASP A 146 OD2 82.2 68.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GN3 A 403 O10 REMARK 620 2 GN3 A 403 O9 66.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GN3 A 403 O7 REMARK 620 2 GN3 A 403 O5 60.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GN3 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 406 DBREF 6S2U A 2 355 UNP F6DES6 F6DES6_THETG 2 355 SEQADV 6S2U SER A 1 UNP F6DES6 EXPRESSION TAG SEQRES 1 A 355 SER VAL GLY ALA ASP LEU GLY LEU TRP ASN ARG LEU GLU SEQRES 2 A 355 PRO ALA LEU ALA TYR LEU ALA PRO GLU GLU ARG ALA LYS SEQRES 3 A 355 VAL ARG GLU ALA TYR ARG PHE ALA GLU GLU ALA HIS ARG SEQRES 4 A 355 GLY GLN LEU ARG ARG SER GLY GLU PRO TYR ILE THR HIS SEQRES 5 A 355 PRO VAL ALA VAL ALA GLU ILE LEU ALA GLY LEU GLN MET SEQRES 6 A 355 ASP ALA ASP THR VAL ALA ALA GLY LEU LEU HIS ASP THR SEQRES 7 A 355 LEU GLU ASP CYS GLY VAL ALA PRO GLU GLU LEU GLU ARG SEQRES 8 A 355 ARG PHE GLY PRO THR VAL ARG ARG ILE VAL GLU GLY GLU SEQRES 9 A 355 THR LYS VAL SER LYS LEU TYR LYS LEU ALA ASN LEU GLU SEQRES 10 A 355 GLY GLU GLU ARG ARG ALA GLU ASP LEU ARG GLN MET PHE SEQRES 11 A 355 ILE ALA MET ALA GLU ASP VAL ARG ILE ILE ILE VAL LYS SEQRES 12 A 355 LEU ALA ASP ARG LEU HIS ASN LEU ARG THR LEU GLU HIS SEQRES 13 A 355 MET PRO PRO GLU LYS GLN LYS ARG ILE ALA GLN GLU THR SEQRES 14 A 355 LEU GLU ILE TYR ALA PRO LEU ALA HIS ARG LEU GLY MET SEQRES 15 A 355 GLY GLN LEU LYS TRP GLU LEU GLU ASP LEU SER PHE ARG SEQRES 16 A 355 TYR LEU HIS PRO GLU ALA PHE ALA SER LEU SER ALA ARG SEQRES 17 A 355 ILE GLN ALA THR GLN GLU ALA ARG GLU ARG LEU ILE GLN SEQRES 18 A 355 LYS ALA ILE HIS LEU LEU GLN GLU THR LEU ALA ARG ASP SEQRES 19 A 355 GLU LEU LEU GLN SER GLN LEU GLN GLY PHE GLU VAL THR SEQRES 20 A 355 GLY ARG PRO LYS HIS LEU TYR SER ILE TRP LYS LYS MET SEQRES 21 A 355 GLU ARG GLU GLY LYS THR LEU GLU GLN ILE TYR ASP LEU SEQRES 22 A 355 LEU ALA VAL ARG VAL ILE LEU ASP PRO LYS PRO ALA PRO SEQRES 23 A 355 THR ARG GLU SER GLN ALA LEU ARG GLU LYS GLN VAL CYS SEQRES 24 A 355 TYR HIS VAL LEU GLY LEU VAL HIS ALA LEU TRP GLN PRO SEQRES 25 A 355 ILE PRO GLY ARG VAL LYS ASP TYR ILE ALA VAL PRO LYS SEQRES 26 A 355 PRO ASN GLY TYR GLN SER LEU HIS THR THR VAL ILE ALA SEQRES 27 A 355 LEU GLU GLY LEU PRO LEU GLU VAL GLN ILE ARG THR ARG SEQRES 28 A 355 GLU MET HIS ARG HET MN A 401 1 HET AMP A 402 23 HET GN3 A 403 36 HET TMO A 404 5 HET MG A 405 1 HET MG A 406 1 HETNAM MN MANGANESE (II) ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM GN3 [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6- HETNAM 2 GN3 OXIDANYLIDENE-1~{H}-PURIN-9-YL)-4-OXIDANYL-2- HETNAM 3 GN3 [[OXIDANYL(PHOSPHONOOXY)PHOSPHORYL]OXYMETHYL]OXOLAN-3- HETNAM 4 GN3 YL]OXY-OXIDANYL-PHOSPHORYL]AMINO]PHOSPHONIC ACID HETNAM TMO TRIMETHYLAMINE OXIDE HETNAM MG MAGNESIUM ION FORMUL 2 MN MN 2+ FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 GN3 C10 H18 N6 O16 P4 FORMUL 5 TMO C3 H9 N O FORMUL 6 MG 2(MG 2+) FORMUL 8 HOH *21(H2 O) HELIX 1 AA1 LEU A 8 GLU A 13 1 6 HELIX 2 AA2 PRO A 14 ALA A 17 5 4 HELIX 3 AA3 ALA A 20 HIS A 38 1 19 HELIX 4 AA4 ILE A 50 LEU A 63 1 14 HELIX 5 AA5 ASP A 66 HIS A 76 1 11 HELIX 6 AA6 ALA A 85 GLY A 94 1 10 HELIX 7 AA7 GLY A 94 VAL A 107 1 14 HELIX 8 AA8 ARG A 122 ALA A 134 1 13 HELIX 9 AA9 ASP A 136 THR A 153 1 18 HELIX 10 AB1 LEU A 154 MET A 157 5 4 HELIX 11 AB2 GLU A 160 ILE A 172 1 13 HELIX 12 AB3 ILE A 172 ARG A 179 1 8 HELIX 13 AB4 MET A 182 HIS A 198 1 17 HELIX 14 AB5 HIS A 198 ILE A 209 1 12 HELIX 15 AB6 THR A 212 ARG A 233 1 22 HELIX 16 AB7 ASP A 234 GLN A 240 1 7 HELIX 17 AB8 HIS A 252 GLY A 264 1 13 HELIX 18 AB9 ILE A 270 ASP A 272 5 3 HELIX 19 AC1 ARG A 288 TRP A 310 1 23 SHEET 1 AA1 5 LEU A 241 PRO A 250 0 SHEET 2 AA1 5 LEU A 274 PRO A 282 -1 O ILE A 279 N GLU A 245 SHEET 3 AA1 5 LEU A 342 THR A 350 1 O GLN A 347 N VAL A 278 SHEET 4 AA1 5 LEU A 332 ALA A 338 -1 N VAL A 336 O LEU A 344 SHEET 5 AA1 5 GLN A 311 PRO A 312 -1 N GLN A 311 O ILE A 337 SHEET 1 AA2 5 LEU A 241 PRO A 250 0 SHEET 2 AA2 5 LEU A 274 PRO A 282 -1 O ILE A 279 N GLU A 245 SHEET 3 AA2 5 LEU A 342 THR A 350 1 O GLN A 347 N VAL A 278 SHEET 4 AA2 5 LEU A 332 ALA A 338 -1 N VAL A 336 O LEU A 344 SHEET 5 AA2 5 LYS A 318 ASP A 319 -1 N LYS A 318 O HIS A 333 LINK NE2 HIS A 52 MN MN A 401 1555 1555 2.24 LINK NE2 HIS A 76 MN MN A 401 1555 1555 2.62 LINK OD2 ASP A 146 MN MN A 401 1555 1555 2.17 LINK O10 GN3 A 403 MG MG A 405 1555 1555 2.23 LINK O9 GN3 A 403 MG MG A 405 1555 1555 2.24 LINK O7 GN3 A 403 MG MG A 406 1555 1555 2.44 LINK O5 GN3 A 403 MG MG A 406 1555 1555 2.53 SITE 1 AC1 5 HIS A 52 HIS A 76 ASP A 77 LEU A 110 SITE 2 AC1 5 ASP A 146 SITE 1 AC2 15 THR A 247 GLY A 248 ARG A 249 LYS A 251 SITE 2 AC2 15 HIS A 252 SER A 255 ALA A 275 VAL A 276 SITE 3 AC2 15 ARG A 277 GLN A 347 ARG A 355 GN3 A 403 SITE 4 AC2 15 MG A 405 HOH A 503 HOH A 507 SITE 1 AC3 20 ARG A 249 LYS A 251 LYS A 259 ASP A 272 SITE 2 AC3 20 ARG A 277 ARG A 316 LYS A 318 TYR A 320 SITE 3 AC3 20 LYS A 325 TYR A 329 HIS A 333 GLN A 347 SITE 4 AC3 20 ARG A 355 AMP A 402 TMO A 404 MG A 405 SITE 5 AC3 20 MG A 406 HOH A 501 HOH A 502 HOH A 509 SITE 1 AC4 2 GN3 A 403 HOH A 508 SITE 1 AC5 2 AMP A 402 GN3 A 403 SITE 1 AC6 1 GN3 A 403 CRYST1 120.739 50.346 86.057 90.00 111.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008282 0.000000 0.003179 0.00000 SCALE2 0.000000 0.019863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012447 0.00000