HEADER HYDROLASE 25-JUN-19 6S3P TITLE CRYSTAL STRUCTURE OF HELICASE PIF1 FROM THERMUS OSHIMAI IN COMPLEX TITLE 2 WITH (DT)18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIF1 HELICASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*T)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS OSHIMAI; SOURCE 3 ORGANISM_TAXID: 56957; SOURCE 4 GENE: THEOS_1468; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C2566H; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B-SUMO; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: THERMUS OSHIMAI; SOURCE 13 ORGANISM_TAXID: 56957 KEYWDS DNA HELICASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.X.DAI,W.F.CHEN,F.Y.TENG,N.N.LIU,X.M.HOU,S.X.DOU,S.RETY,X.G.XI REVDAT 4 24-JAN-24 6S3P 1 REMARK REVDAT 3 28-APR-21 6S3P 1 JRNL REVDAT 2 07-APR-21 6S3P 1 JRNL REVDAT 1 13-JAN-21 6S3P 0 JRNL AUTH Y.X.DAI,W.F.CHEN,N.N.LIU,F.Y.TENG,H.L.GUO,X.M.HOU,S.X.DOU, JRNL AUTH 2 S.RETY,X.G.XI JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF SF1B PIF1 FROM THERMUS JRNL TITL 2 OSHIMAI REVEAL DIMERIZATION-INDUCED HELICASE INHIBITION. JRNL REF NUCLEIC ACIDS RES. V. 49 4129 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33784404 JRNL DOI 10.1093/NAR/GKAB188 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14RC1_3177: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 38651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5286 - 4.6406 0.95 3041 134 0.1647 0.2071 REMARK 3 2 4.6406 - 3.6838 0.98 2988 161 0.1390 0.1690 REMARK 3 3 3.6838 - 3.2183 0.88 2614 158 0.1646 0.1762 REMARK 3 4 3.2183 - 2.9241 1.00 3008 141 0.1836 0.2474 REMARK 3 5 2.9241 - 2.7145 1.00 2962 169 0.1939 0.2231 REMARK 3 6 2.7145 - 2.5545 0.86 2526 148 0.1892 0.2078 REMARK 3 7 2.5545 - 2.4266 1.00 2975 139 0.1930 0.2416 REMARK 3 8 2.4266 - 2.3210 1.00 2963 127 0.1952 0.2245 REMARK 3 9 2.3210 - 2.2316 0.71 2091 116 0.2132 0.2553 REMARK 3 10 2.2316 - 2.1546 1.00 2936 151 0.2000 0.2089 REMARK 3 11 2.1546 - 2.0872 1.00 2929 159 0.1946 0.2253 REMARK 3 12 2.0872 - 2.0276 0.61 1770 87 0.2076 0.2730 REMARK 3 13 2.0276 - 1.9742 0.92 2696 146 0.2079 0.2743 REMARK 3 14 1.9742 - 1.9260 0.42 1259 57 0.2472 0.3142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3741 REMARK 3 ANGLE : 0.926 5105 REMARK 3 CHIRALITY : 0.059 563 REMARK 3 PLANARITY : 0.007 643 REMARK 3 DIHEDRAL : 23.318 1431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9837 4.2517 -3.4473 REMARK 3 T TENSOR REMARK 3 T11: 0.4155 T22: 0.3094 REMARK 3 T33: 0.2139 T12: -0.0541 REMARK 3 T13: 0.0753 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 4.1375 L22: 4.7797 REMARK 3 L33: 4.4703 L12: -3.0509 REMARK 3 L13: 1.4468 L23: -0.1976 REMARK 3 S TENSOR REMARK 3 S11: -0.1473 S12: -0.0820 S13: 0.1206 REMARK 3 S21: 0.4450 S22: 0.0951 S23: -0.3191 REMARK 3 S31: 0.2919 S32: 0.0962 S33: 0.0303 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2123 3.1122 -23.1745 REMARK 3 T TENSOR REMARK 3 T11: 0.2014 T22: 0.1986 REMARK 3 T33: 0.2272 T12: -0.0408 REMARK 3 T13: 0.0374 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 1.7617 L22: 2.4625 REMARK 3 L33: 2.7389 L12: -0.3207 REMARK 3 L13: 0.3446 L23: -0.6798 REMARK 3 S TENSOR REMARK 3 S11: 0.0583 S12: -0.0132 S13: -0.1973 REMARK 3 S21: 0.1413 S22: -0.0158 S23: 0.3330 REMARK 3 S31: 0.2898 S32: -0.1620 S33: -0.0242 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4350 19.9421 -9.7456 REMARK 3 T TENSOR REMARK 3 T11: 0.4216 T22: 0.2696 REMARK 3 T33: 0.2650 T12: 0.0063 REMARK 3 T13: 0.0002 T23: -0.0620 REMARK 3 L TENSOR REMARK 3 L11: 2.9961 L22: 1.3026 REMARK 3 L33: 1.1062 L12: 1.3965 REMARK 3 L13: 0.5137 L23: 0.0826 REMARK 3 S TENSOR REMARK 3 S11: 0.1698 S12: -0.2690 S13: 0.0985 REMARK 3 S21: 0.5251 S22: -0.1975 S23: 0.0193 REMARK 3 S31: -0.0655 S32: -0.0423 S33: 0.0349 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9410 6.2109 -33.4639 REMARK 3 T TENSOR REMARK 3 T11: 0.1607 T22: 0.2151 REMARK 3 T33: 0.2045 T12: -0.0074 REMARK 3 T13: 0.0024 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.3886 L22: 2.2377 REMARK 3 L33: 1.8877 L12: -0.5314 REMARK 3 L13: 0.1886 L23: 0.3978 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.1144 S13: 0.0122 REMARK 3 S21: -0.0121 S22: -0.0009 S23: -0.1216 REMARK 3 S31: -0.0502 S32: 0.1102 S33: -0.0602 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 502 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9347 21.2673 -16.6397 REMARK 3 T TENSOR REMARK 3 T11: 0.3108 T22: 0.1748 REMARK 3 T33: 0.1619 T12: -0.0094 REMARK 3 T13: -0.0401 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 4.0383 L22: 2.5130 REMARK 3 L33: 1.6082 L12: 0.3529 REMARK 3 L13: -0.0047 L23: 0.2342 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: -0.0842 S13: 0.0826 REMARK 3 S21: 0.3472 S22: 0.0961 S23: 0.0019 REMARK 3 S31: -0.0168 S32: -0.0045 S33: 0.0160 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8247 12.5509 -31.8863 REMARK 3 T TENSOR REMARK 3 T11: 0.2187 T22: 0.2732 REMARK 3 T33: 0.2508 T12: 0.0315 REMARK 3 T13: -0.0458 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 5.9587 L22: 0.1672 REMARK 3 L33: 6.6742 L12: -0.9607 REMARK 3 L13: 0.1770 L23: -0.3006 REMARK 3 S TENSOR REMARK 3 S11: -0.1956 S12: 0.4727 S13: 0.5580 REMARK 3 S21: -0.4164 S22: 0.1266 S23: 0.4637 REMARK 3 S31: -0.3164 S32: -0.2086 S33: 0.0364 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292103094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38861 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.926 REMARK 200 RESOLUTION RANGE LOW (A) : 37.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05570 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46280 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5FTD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL 0.1M NAF 0.03M NAI 0.03M NABR REMARK 280 0.03M MES 0.03M PEG 4K 10% GLYCEROL 20%, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.42500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.14800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.29150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.14800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.42500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.29150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 65 REMARK 465 GLU A 66 REMARK 465 GLY A 503 REMARK 465 TRP A 504 REMARK 465 PRO A 505 REMARK 465 SER A 506 REMARK 465 LEU A 507 REMARK 465 DT B 9 REMARK 465 DT B 10 REMARK 465 DT B 11 REMARK 465 DT B 12 REMARK 465 DT B 13 REMARK 465 DT B 14 REMARK 465 DT B 15 REMARK 465 DT B 16 REMARK 465 DT B 17 REMARK 465 DT B 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT B 8 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT B 8 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT B 8 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 253 O HOH A 601 1.88 REMARK 500 O HOH A 810 O HOH B 125 1.98 REMARK 500 O HOH A 679 O HOH A 748 1.99 REMARK 500 OP2 DT B 2 O HOH B 101 1.99 REMARK 500 O HOH A 605 O HOH A 822 2.00 REMARK 500 O HOH A 911 O HOH A 944 2.02 REMARK 500 OE1 GLN A 255 O HOH A 602 2.02 REMARK 500 O HOH A 774 O HOH A 778 2.03 REMARK 500 NH1 ARG A 287 O HOH A 603 2.08 REMARK 500 O HOH A 886 O HOH B 127 2.11 REMARK 500 O4 DT B 7 O HOH B 102 2.14 REMARK 500 OG1 THR A 210 OE2 GLU A 490 2.16 REMARK 500 O HOH A 883 O HOH A 906 2.16 REMARK 500 O HOH A 916 O HOH A 943 2.16 REMARK 500 OE1 GLN A 435 O HOH A 604 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 5 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 92 70.02 -69.25 REMARK 500 ASP A 260 79.89 -150.04 REMARK 500 GLU A 408 -70.51 -63.20 REMARK 500 GLU A 409 70.66 40.90 REMARK 500 ALA A 426 25.73 -142.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 92 ALA A 93 -137.82 REMARK 500 TYR A 108 LYS A 109 -135.32 REMARK 500 GLU A 408 GLU A 409 149.76 REMARK 500 REMARK 500 REMARK: NULL DBREF 6S3P A 65 507 UNP K7RJ88 K7RJ88_THEOS 65 507 DBREF 6S3P B 1 18 PDB 6S3P 6S3P 1 18 SEQADV 6S3P ILE A 162 UNP K7RJ88 MET 162 CONFLICT SEQADV 6S3P LEU A 456 UNP K7RJ88 PRO 456 CONFLICT SEQRES 1 A 443 PRO GLU GLY LEU SER SER GLU GLN GLN ARG ALA PHE LEU SEQRES 2 A 443 ALA VAL THR GLN THR PRO HIS PRO ALA HIS LEU ILE THR SEQRES 3 A 443 GLY PRO ALA GLY THR GLY LYS THR THR LEU LEU TYR ALA SEQRES 4 A 443 LEU GLN GLU PHE TYR LYS GLY ARG ALA VAL THR LEU ALA SEQRES 5 A 443 PRO THR GLY THR ALA ALA LEU GLN ALA ARG GLY GLN THR SEQRES 6 A 443 VAL HIS SER PHE PHE ARG PHE PRO ALA ARG LEU LEU ARG SEQRES 7 A 443 TYR ARG HIS PRO GLU ASP ILE ARG PRO PRO GLY PRO HIS SEQRES 8 A 443 SER PRO LEU ARG LYS ALA ILE GLU GLN MET GLU VAL LEU SEQRES 9 A 443 ILE LEU ASP GLU VAL GLY MET VAL ARG VAL ASP LEU LEU SEQRES 10 A 443 GLU ALA MET ASP TRP ALA LEU ARG LYS THR ARG LYS ARG SEQRES 11 A 443 LEU GLU GLU PRO PHE GLY GLY VAL LYS VAL LEU LEU LEU SEQRES 12 A 443 GLY ASP THR ARG GLN LEU GLU PRO VAL VAL PRO GLY GLY SEQRES 13 A 443 GLU GLU ALA LEU TYR ILE ALA ARG THR TRP GLY GLY PRO SEQRES 14 A 443 PHE PHE PHE GLN ALA HIS VAL TRP GLU GLU VAL ALA LEU SEQRES 15 A 443 ARG VAL HIS ARG LEU TRP GLU SER GLN ARG GLN ARG GLU SEQRES 16 A 443 ASP PRO LEU PHE ALA GLU LEU LEU LYS ARG LEU ARG GLN SEQRES 17 A 443 GLY ASP PRO GLN ALA LEU GLU THR LEU ASN ARG ALA ALA SEQRES 18 A 443 VAL ARG PRO ASP GLY GLY GLU GLU PRO GLY THR LEU ILE SEQRES 19 A 443 LEU THR PRO ARG ARG LYS GLU ALA ASP ALA LEU ASN LEU SEQRES 20 A 443 LYS ARG LEU GLU ALA LEU PRO GLY LYS PRO LEU GLU TYR SEQRES 21 A 443 GLN ALA GLN VAL LYS GLY GLU PHE ALA GLU THR ASP PHE SEQRES 22 A 443 PRO THR GLU ALA ALA LEU THR LEU LYS LYS GLY ALA GLN SEQRES 23 A 443 VAL ILE LEU LEU ARG ASN ASP PRO LEU GLY GLU TYR PHE SEQRES 24 A 443 ASN GLY ASP LEU GLY TRP VAL GLU ASP LEU GLU ALA GLU SEQRES 25 A 443 ALA LEU ALA VAL ARG LEU LYS ARG ASN GLY ARG ARG VAL SEQRES 26 A 443 VAL ILE ARG PRO PHE VAL TRP GLU LYS ILE VAL TYR THR SEQRES 27 A 443 TYR ASP SER GLU ARG GLU GLU ILE LYS PRO GLN VAL VAL SEQRES 28 A 443 GLY THR PHE ARG GLN VAL PRO VAL ARG LEU ALA TRP ALA SEQRES 29 A 443 LEU THR VAL HIS LYS ALA GLN GLY LEU THR LEU ASP LYS SEQRES 30 A 443 VAL HIS LEU GLU LEU GLY ARG GLY LEU PHE ALA HIS GLY SEQRES 31 A 443 GLN LEU TYR VAL ALA LEU THR ARG VAL ARG ARG LEU GLN SEQRES 32 A 443 ASP LEU SER LEU SER ARG PRO ILE ALA PRO THR GLU LEU SEQRES 33 A 443 LEU TRP ARG PRO GLU VAL GLU VAL PHE GLU THR ARG ILE SEQRES 34 A 443 GLN GLU GLY ILE TRP GLN LYS SER HIS GLY TRP PRO SER SEQRES 35 A 443 LEU SEQRES 1 B 18 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 2 B 18 DT DT DT DT DT FORMUL 3 HOH *413(H2 O) HELIX 1 AA1 SER A 69 GLN A 81 1 13 HELIX 2 AA2 GLY A 96 LYS A 109 1 14 HELIX 3 AA3 THR A 118 ALA A 125 1 8 HELIX 4 AA4 VAL A 130 ARG A 135 1 6 HELIX 5 AA5 SER A 156 MET A 165 1 10 HELIX 6 AA6 GLU A 172 VAL A 176 5 5 HELIX 7 AA7 ARG A 177 LYS A 193 1 17 HELIX 8 AA8 GLU A 197 VAL A 202 5 6 HELIX 9 AA9 GLY A 220 GLY A 231 1 12 HELIX 10 AB1 PHE A 234 GLU A 243 5 10 HELIX 11 AB2 SER A 254 ASP A 260 1 7 HELIX 12 AB3 ASP A 260 GLN A 272 1 13 HELIX 13 AB4 GLN A 276 VAL A 286 1 11 HELIX 14 AB5 ARG A 287 GLU A 293 5 7 HELIX 15 AB6 ARG A 302 LEU A 317 1 16 HELIX 16 AB7 ALA A 333 PHE A 337 5 5 HELIX 17 AB8 VAL A 431 GLN A 435 1 5 HELIX 18 AB9 GLY A 454 THR A 461 1 8 HELIX 19 AC1 ARG A 465 GLN A 467 5 3 HELIX 20 AC2 ALA A 476 LEU A 480 5 5 HELIX 21 AC3 ARG A 483 ILE A 493 1 11 SHEET 1 AA1 7 GLN A 128 THR A 129 0 SHEET 2 AA1 7 ALA A 112 ALA A 116 1 N THR A 114 O GLN A 128 SHEET 3 AA1 7 VAL A 167 LEU A 170 1 O ILE A 169 N LEU A 115 SHEET 4 AA1 7 LYS A 203 LEU A 207 1 O LEU A 205 N LEU A 168 SHEET 5 AA1 7 ALA A 86 THR A 90 1 N ILE A 89 O LEU A 206 SHEET 6 AA1 7 LEU A 246 ARG A 250 1 O ARG A 247 N LEU A 88 SHEET 7 AA1 7 ILE A 497 TRP A 498 -1 O TRP A 498 N LEU A 246 SHEET 1 AA2 4 ALA A 428 THR A 430 0 SHEET 2 AA2 4 LEU A 297 THR A 300 1 N ILE A 298 O LEU A 429 SHEET 3 AA2 4 VAL A 442 LEU A 444 1 O HIS A 443 N LEU A 299 SHEET 4 AA2 4 LEU A 469 LEU A 471 1 O SER A 470 N LEU A 444 SHEET 1 AA3 2 LEU A 322 GLN A 325 0 SHEET 2 AA3 2 ALA A 342 LEU A 345 -1 O LEU A 343 N TYR A 324 SHEET 1 AA4 3 GLN A 327 GLY A 330 0 SHEET 2 AA4 3 ILE A 410 GLN A 420 -1 O ARG A 419 N GLN A 327 SHEET 3 AA4 3 PHE A 394 TYR A 403 -1 N LYS A 398 O VAL A 415 SHEET 1 AA5 5 ARG A 388 ILE A 391 0 SHEET 2 AA5 5 ALA A 377 LEU A 382 -1 N LEU A 378 O ILE A 391 SHEET 3 AA5 5 LEU A 367 GLU A 374 -1 N GLU A 371 O ALA A 379 SHEET 4 AA5 5 GLN A 350 LEU A 353 -1 N VAL A 351 O GLY A 368 SHEET 5 AA5 5 VAL A 423 LEU A 425 -1 O ARG A 424 N ILE A 352 CRYST1 60.850 64.583 144.296 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016434 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006930 0.00000