data_6S44 # _entry.id 6S44 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6S44 pdb_00006s44 10.2210/pdb6s44/pdb WWPDB D_1200013059 ? ? EMDB EMD-10097 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Faba bean necrotic stunt virus (FBNSV)' _pdbx_database_related.db_id EMD-10097 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6S44 _pdbx_database_status.recvd_initial_deposition_date 2019-06-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Trapani, S.' 1 0000-0002-2929-6306 'Lai Kee Him, J.' 2 ? 'Blanc, S.' 3 0000-0002-3412-0989 'Bron, P.' 4 0000-0002-3354-9513 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Plos Pathog.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1553-7374 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 19 _citation.language ? _citation.page_first e1011086 _citation.page_last e1011086 _citation.title ;Structure-guided mutagenesis of the capsid protein indicates that a nanovirus requires assembled viral particles for systemic infection. ; _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1011086 _citation.pdbx_database_id_PubMed 36622854 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trapani, S.' 1 0000-0002-2929-6306 primary 'Bhat, E.A.' 2 ? primary 'Yvon, M.' 3 ? primary 'Lai-Kee-Him, J.' 4 ? primary 'Hoh, F.' 5 ? primary 'Vernerey, M.S.' 6 ? primary 'Pirolles, E.' 7 ? primary 'Bonnamy, M.' 8 ? primary 'Schoehn, G.' 9 ? primary 'Zeddam, J.L.' 10 ? primary 'Blanc, S.' 11 ? primary 'Bron, P.' 12 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6S44 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Capsid protein' _entity.formula_weight 19200.422 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVSNWNWSGKKGRRTPRRGYTRPFKSAVPTTRVVVHQSAVLKKDDVSGSEIKPEGDVARYKIRKVMLSCTLRMRPGELVN YLIVKCSSPIVNWSAAFTAPALMVKESCQDMITIIGKGKVESNGVAGSDCTKSFNKFIRLGAGISQTQHLYVVMYTSEAV KTVLEHRVYIEV ; _entity_poly.pdbx_seq_one_letter_code_can ;MVSNWNWSGKKGRRTPRRGYTRPFKSAVPTTRVVVHQSAVLKKDDVSGSEIKPEGDVARYKIRKVMLSCTLRMRPGELVN YLIVKCSSPIVNWSAAFTAPALMVKESCQDMITIIGKGKVESNGVAGSDCTKSFNKFIRLGAGISQTQHLYVVMYTSEAV KTVLEHRVYIEV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 SER n 1 4 ASN n 1 5 TRP n 1 6 ASN n 1 7 TRP n 1 8 SER n 1 9 GLY n 1 10 LYS n 1 11 LYS n 1 12 GLY n 1 13 ARG n 1 14 ARG n 1 15 THR n 1 16 PRO n 1 17 ARG n 1 18 ARG n 1 19 GLY n 1 20 TYR n 1 21 THR n 1 22 ARG n 1 23 PRO n 1 24 PHE n 1 25 LYS n 1 26 SER n 1 27 ALA n 1 28 VAL n 1 29 PRO n 1 30 THR n 1 31 THR n 1 32 ARG n 1 33 VAL n 1 34 VAL n 1 35 VAL n 1 36 HIS n 1 37 GLN n 1 38 SER n 1 39 ALA n 1 40 VAL n 1 41 LEU n 1 42 LYS n 1 43 LYS n 1 44 ASP n 1 45 ASP n 1 46 VAL n 1 47 SER n 1 48 GLY n 1 49 SER n 1 50 GLU n 1 51 ILE n 1 52 LYS n 1 53 PRO n 1 54 GLU n 1 55 GLY n 1 56 ASP n 1 57 VAL n 1 58 ALA n 1 59 ARG n 1 60 TYR n 1 61 LYS n 1 62 ILE n 1 63 ARG n 1 64 LYS n 1 65 VAL n 1 66 MET n 1 67 LEU n 1 68 SER n 1 69 CYS n 1 70 THR n 1 71 LEU n 1 72 ARG n 1 73 MET n 1 74 ARG n 1 75 PRO n 1 76 GLY n 1 77 GLU n 1 78 LEU n 1 79 VAL n 1 80 ASN n 1 81 TYR n 1 82 LEU n 1 83 ILE n 1 84 VAL n 1 85 LYS n 1 86 CYS n 1 87 SER n 1 88 SER n 1 89 PRO n 1 90 ILE n 1 91 VAL n 1 92 ASN n 1 93 TRP n 1 94 SER n 1 95 ALA n 1 96 ALA n 1 97 PHE n 1 98 THR n 1 99 ALA n 1 100 PRO n 1 101 ALA n 1 102 LEU n 1 103 MET n 1 104 VAL n 1 105 LYS n 1 106 GLU n 1 107 SER n 1 108 CYS n 1 109 GLN n 1 110 ASP n 1 111 MET n 1 112 ILE n 1 113 THR n 1 114 ILE n 1 115 ILE n 1 116 GLY n 1 117 LYS n 1 118 GLY n 1 119 LYS n 1 120 VAL n 1 121 GLU n 1 122 SER n 1 123 ASN n 1 124 GLY n 1 125 VAL n 1 126 ALA n 1 127 GLY n 1 128 SER n 1 129 ASP n 1 130 CYS n 1 131 THR n 1 132 LYS n 1 133 SER n 1 134 PHE n 1 135 ASN n 1 136 LYS n 1 137 PHE n 1 138 ILE n 1 139 ARG n 1 140 LEU n 1 141 GLY n 1 142 ALA n 1 143 GLY n 1 144 ILE n 1 145 SER n 1 146 GLN n 1 147 THR n 1 148 GLN n 1 149 HIS n 1 150 LEU n 1 151 TYR n 1 152 VAL n 1 153 VAL n 1 154 MET n 1 155 TYR n 1 156 THR n 1 157 SER n 1 158 GLU n 1 159 ALA n 1 160 VAL n 1 161 LYS n 1 162 THR n 1 163 VAL n 1 164 LEU n 1 165 GLU n 1 166 HIS n 1 167 ARG n 1 168 VAL n 1 169 TYR n 1 170 ILE n 1 171 GLU n 1 172 VAL n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 172 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Faba bean necrotic stunt virus' _entity_src_nat.pdbx_ncbi_taxonomy_id 283824 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C7DLN3_9VIRU _struct_ref.pdbx_db_accession C7DLN3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVSNWNWSGKKGRRTPRRGYTRPFKSAVPTTRVVVHQSAVLKKDDVSGSEIKPEGDVARYKIRKVMLSCTLRMRPGELVN YLIVKCSSPIVNWSAAFTAPALMVKESCQDMITIIGKGKVESNGVAGSDCTKSFNKFIRLGAGISQTQHLYVVMYTSEAV KTVLEHRVYIEV ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6S44 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 172 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C7DLN3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 172 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 172 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6S44 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6S44 _struct.title 'Faba bean necrotic stunt virus (FBNSV)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6S44 _struct_keywords.text 'icosahedral T1 capsid, VIRUS' _struct_keywords.pdbx_keywords VIRUS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id LYS _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 105 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 109 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LYS _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 105 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 109 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 31 ? LEU A 41 ? THR A 31 LEU A 41 AA1 2 VAL A 160 ? ILE A 170 ? VAL A 160 ILE A 170 AA1 3 LYS A 61 ? MET A 73 ? LYS A 61 MET A 73 AA1 4 CYS A 130 ? SER A 145 ? CYS A 130 SER A 145 AA2 1 VAL A 46 ? ILE A 51 ? VAL A 46 ILE A 51 AA2 2 HIS A 149 ? THR A 156 ? HIS A 149 THR A 156 AA2 3 LEU A 78 ? CYS A 86 ? LEU A 78 CYS A 86 AA2 4 ILE A 112 ? GLU A 121 ? ILE A 112 GLU A 121 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 39 ? N ALA A 39 O THR A 162 ? O THR A 162 AA1 2 3 O ARG A 167 ? O ARG A 167 N MET A 66 ? N MET A 66 AA1 3 4 N ILE A 62 ? N ILE A 62 O ILE A 144 ? O ILE A 144 AA2 1 2 N SER A 47 ? N SER A 47 O MET A 154 ? O MET A 154 AA2 2 3 O TYR A 151 ? O TYR A 151 N VAL A 84 ? N VAL A 84 AA2 3 4 N LYS A 85 ? N LYS A 85 O THR A 113 ? O THR A 113 # _atom_sites.entry_id 6S44 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 VAL 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 ASN 4 4 ? ? ? A . n A 1 5 TRP 5 5 ? ? ? A . n A 1 6 ASN 6 6 ? ? ? A . n A 1 7 TRP 7 7 ? ? ? A . n A 1 8 SER 8 8 ? ? ? A . n A 1 9 GLY 9 9 ? ? ? A . n A 1 10 LYS 10 10 ? ? ? A . n A 1 11 LYS 11 11 ? ? ? A . n A 1 12 GLY 12 12 ? ? ? A . n A 1 13 ARG 13 13 ? ? ? A . n A 1 14 ARG 14 14 ? ? ? A . n A 1 15 THR 15 15 ? ? ? A . n A 1 16 PRO 16 16 ? ? ? A . n A 1 17 ARG 17 17 ? ? ? A . n A 1 18 ARG 18 18 ? ? ? A . n A 1 19 GLY 19 19 ? ? ? A . n A 1 20 TYR 20 20 ? ? ? A . n A 1 21 THR 21 21 ? ? ? A . n A 1 22 ARG 22 22 ? ? ? A . n A 1 23 PRO 23 23 ? ? ? A . n A 1 24 PHE 24 24 ? ? ? A . n A 1 25 LYS 25 25 ? ? ? A . n A 1 26 SER 26 26 ? ? ? A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 HIS 36 36 36 HIS HIS A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 MET 66 66 66 MET MET A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 CYS 86 86 86 CYS CYS A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 TRP 93 93 93 TRP TRP A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 MET 103 103 103 MET MET A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 CYS 108 108 108 CYS CYS A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 MET 111 111 111 MET MET A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 CYS 130 130 130 CYS CYS A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 ASN 135 135 135 ASN ASN A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 GLN 146 146 146 GLN GLN A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 GLN 148 148 148 GLN GLN A . n A 1 149 HIS 149 149 149 HIS HIS A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 TYR 151 151 151 TYR TYR A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 MET 154 154 154 MET MET A . n A 1 155 TYR 155 155 155 TYR TYR A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 SER 157 157 157 SER SER A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 ALA 159 159 159 ALA ALA A . n A 1 160 VAL 160 160 160 VAL VAL A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 THR 162 162 162 THR THR A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 HIS 166 166 166 HIS HIS A . n A 1 167 ARG 167 167 167 ARG ARG A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 GLU 171 171 171 GLU GLU A . n A 1 172 VAL 172 172 172 VAL VAL A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details 'complete icosahedral assembly' _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 60-meric _pdbx_struct_assembly.oligomeric_count 60 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression '(1-60)' _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 0 1 0 0 0 0 1 0 2 'point symmetry operation' ? ? 0.8090170 -0.5000000 -0.3090170 215.400 0.5000000 0.3090170 0.8090170 -133.125 -0.3090170 -0.8090170 0.5000000 348.525 3 'point symmetry operation' ? ? 0.8090170 0.5000000 -0.3090170 0.000 -0.5000000 0.3090170 -0.8090170 430.800 -0.3090170 0.8090170 0.5000000 0.000 4 'point symmetry operation' ? ? 0.5000000 -0.3090170 0.8090170 0.000 -0.3090170 0.8090170 0.5000000 -0.000 -0.8090170 -0.5000000 0.3090170 430.800 5 'point symmetry operation' ? ? 0.5000000 -0.3090170 -0.8090170 348.525 -0.3090170 0.8090170 -0.5000000 215.400 0.8090170 0.5000000 0.3090170 -133.125 6 'point symmetry operation' ? ? 0.5000000 0.3090170 -0.8090170 215.400 0.3090170 0.8090170 0.5000000 -133.125 0.8090170 -0.5000000 0.3090170 82.275 7 'point symmetry operation' ? ? 0.5000000 0.3090170 0.8090170 -133.125 0.3090170 0.8090170 -0.5000000 82.275 -0.8090170 0.5000000 0.3090170 215.400 8 'point symmetry operation' ? ? 0.3090170 -0.8090170 0.5000000 215.400 0.8090170 0.5000000 0.3090170 -133.125 -0.5000000 0.3090170 0.8090170 82.275 9 'point symmetry operation' ? ? 0.3090170 0.8090170 -0.5000000 82.275 -0.8090170 0.5000000 0.3090170 215.400 0.5000000 0.3090170 0.8090170 -133.125 10 'point symmetry operation' ? ? 0.3090170 -0.8090170 -0.5000000 430.800 0.8090170 0.5000000 -0.3090170 0.000 0.5000000 -0.3090170 0.8090170 -0.000 11 'point symmetry operation' ? ? 0.3090170 0.8090170 0.5000000 -133.125 -0.8090170 0.5000000 -0.3090170 348.525 -0.5000000 -0.3090170 0.8090170 215.400 12 'point symmetry operation' ? ? 0.8090170 0.5000000 0.3090170 -133.125 -0.5000000 0.3090170 0.8090170 82.275 0.3090170 -0.8090170 0.5000000 215.400 13 'point symmetry operation' ? ? 0.8090170 -0.5000000 0.3090170 82.275 0.5000000 0.3090170 -0.8090170 215.400 0.3090170 0.8090170 0.5000000 -133.125 14 'point symmetry operation' ? ? 0.5000000 -0.3090170 -0.8090170 348.525 0.3090170 -0.8090170 0.5000000 215.400 -0.8090170 -0.5000000 -0.3090170 563.925 15 'point symmetry operation' ? ? 0.5000000 0.3090170 -0.8090170 215.400 -0.3090170 -0.8090170 -0.5000000 563.925 -0.8090170 0.5000000 -0.3090170 348.525 16 'point symmetry operation' ? ? -0.3090170 -0.8090170 0.5000000 348.525 -0.8090170 0.5000000 0.3090170 215.400 -0.5000000 -0.3090170 -0.8090170 563.925 17 'point symmetry operation' ? ? -0.3090170 -0.8090170 -0.5000000 563.925 -0.8090170 0.5000000 -0.3090170 348.525 0.5000000 0.3090170 -0.8090170 215.400 18 'point symmetry operation' ? ? -0.3090170 0.8090170 -0.5000000 215.400 0.8090170 0.5000000 0.3090170 -133.125 0.5000000 -0.3090170 -0.8090170 348.525 19 'point symmetry operation' ? ? -0.3090170 0.8090170 0.5000000 -0.000 0.8090170 0.5000000 -0.3090170 -0.000 -0.5000000 0.3090170 -0.8090170 430.800 20 'point symmetry operation' ? ? -0.8090170 -0.5000000 0.3090170 430.800 0.5000000 -0.3090170 0.8090170 -0.000 -0.3090170 0.8090170 0.5000000 -0.000 21 'point symmetry operation' ? ? -0.8090170 0.5000000 -0.3090170 348.525 -0.5000000 -0.3090170 0.8090170 215.400 0.3090170 0.8090170 0.5000000 -133.125 22 'point symmetry operation' ? ? -0.8090170 -0.5000000 -0.3090170 563.925 0.5000000 -0.3090170 -0.8090170 348.525 0.3090170 -0.8090170 0.5000000 215.400 23 'point symmetry operation' ? ? -0.8090170 0.5000000 0.3090170 215.400 -0.5000000 -0.3090170 -0.8090170 563.925 -0.3090170 -0.8090170 0.5000000 348.525 24 'point symmetry operation' ? ? 0.5000000 0.3090170 0.8090170 -133.125 -0.3090170 -0.8090170 0.5000000 348.525 0.8090170 -0.5000000 -0.3090170 215.400 25 'point symmetry operation' ? ? 0.5000000 -0.3090170 0.8090170 0.000 0.3090170 -0.8090170 -0.5000000 430.800 0.8090170 0.5000000 -0.3090170 0.000 26 'point symmetry operation' ? ? -0.0000000 -1.0000000 0.0000000 430.800 0.0000000 0.0000000 1.0000000 -0.000 -1.0000000 0.0000000 0.0000000 430.800 27 'point symmetry operation' ? ? -0.0000000 -0.0000000 -1.0000000 430.800 -1.0000000 -0.0000000 0.0000000 430.800 -0.0000000 1.0000000 0.0000000 0.000 28 'point symmetry operation' ? ? 0.0000000 -0.0000000 -1.0000000 430.800 1.0000000 0.0000000 0.0000000 -0.000 0.0000000 -1.0000000 0.0000000 430.800 29 'point symmetry operation' ? ? 0.0000000 1.0000000 0.0000000 -0.000 -0.0000000 0.0000000 -1.0000000 430.800 -1.0000000 0.0000000 0.0000000 430.800 30 'point symmetry operation' ? ? 0.8090170 -0.5000000 0.3090170 82.275 -0.5000000 -0.3090170 0.8090170 215.400 -0.3090170 -0.8090170 -0.5000000 563.925 31 'point symmetry operation' ? ? 0.8090170 -0.5000000 -0.3090170 215.400 -0.5000000 -0.3090170 -0.8090170 563.925 0.3090170 0.8090170 -0.5000000 82.275 32 'point symmetry operation' ? ? 0.8090170 0.5000000 -0.3090170 0.000 0.5000000 -0.3090170 0.8090170 0.000 0.3090170 -0.8090170 -0.5000000 430.800 33 'point symmetry operation' ? ? 0.8090170 0.5000000 0.3090170 -133.125 0.5000000 -0.3090170 -0.8090170 348.525 -0.3090170 0.8090170 -0.5000000 215.400 34 'point symmetry operation' ? ? -0.3090170 -0.8090170 -0.5000000 563.925 0.8090170 -0.5000000 0.3090170 82.275 -0.5000000 -0.3090170 0.8090170 215.400 35 'point symmetry operation' ? ? -0.3090170 0.8090170 -0.5000000 215.400 -0.8090170 -0.5000000 -0.3090170 563.925 -0.5000000 0.3090170 0.8090170 82.275 36 'point symmetry operation' ? ? -0.5000000 -0.3090170 0.8090170 215.400 0.3090170 0.8090170 0.5000000 -133.125 -0.8090170 0.5000000 -0.3090170 348.525 37 'point symmetry operation' ? ? -0.5000000 0.3090170 -0.8090170 430.800 -0.3090170 0.8090170 0.5000000 0.000 0.8090170 0.5000000 -0.3090170 -0.000 38 'point symmetry operation' ? ? -0.5000000 -0.3090170 -0.8090170 563.925 0.3090170 0.8090170 -0.5000000 82.275 0.8090170 -0.5000000 -0.3090170 215.400 39 'point symmetry operation' ? ? -0.5000000 0.3090170 0.8090170 82.275 -0.3090170 0.8090170 -0.5000000 215.400 -0.8090170 -0.5000000 -0.3090170 563.925 40 'point symmetry operation' ? ? -0.0000000 -0.0000000 1.0000000 0.000 -1.0000000 0.0000000 -0.0000000 430.800 -0.0000000 -1.0000000 -0.0000000 430.800 41 'point symmetry operation' ? ? -0.0000000 -1.0000000 -0.0000000 430.800 -0.0000000 0.0000000 -1.0000000 430.800 1.0000000 -0.0000000 -0.0000000 0.000 42 'point symmetry operation' ? ? 0.0000000 1.0000000 0.0000000 -0.000 -0.0000000 -0.0000000 1.0000000 0.000 1.0000000 -0.0000000 0.0000000 -0.000 43 'point symmetry operation' ? ? 0.0000000 -0.0000000 1.0000000 -0.000 1.0000000 -0.0000000 -0.0000000 0.000 0.0000000 1.0000000 0.0000000 -0.000 44 'point symmetry operation' ? ? -0.3090170 -0.8090170 0.5000000 348.525 0.8090170 -0.5000000 -0.3090170 215.400 0.5000000 0.3090170 0.8090170 -133.125 45 'point symmetry operation' ? ? -0.3090170 0.8090170 0.5000000 0.000 -0.8090170 -0.5000000 0.3090170 430.800 0.5000000 -0.3090170 0.8090170 0.000 46 'point symmetry operation' ? ? 0.3090170 -0.8090170 -0.5000000 430.800 -0.8090170 -0.5000000 0.3090170 430.800 -0.5000000 0.3090170 -0.8090170 430.800 47 'point symmetry operation' ? ? 0.3090170 0.8090170 -0.5000000 82.275 0.8090170 -0.5000000 -0.3090170 215.400 -0.5000000 -0.3090170 -0.8090170 563.925 48 'point symmetry operation' ? ? -0.5000000 -0.3090170 -0.8090170 563.925 -0.3090170 -0.8090170 0.5000000 348.525 -0.8090170 0.5000000 0.3090170 215.400 49 'point symmetry operation' ? ? -0.5000000 0.3090170 -0.8090170 430.800 0.3090170 -0.8090170 -0.5000000 430.800 -0.8090170 -0.5000000 0.3090170 430.800 50 'point symmetry operation' ? ? 1.0000000 -0.0000000 0.0000000 0.000 -0.0000000 -1.0000000 0.0000000 430.800 -0.0000000 -0.0000000 -1.0000000 430.800 51 'point symmetry operation' ? ? -0.8090170 -0.5000000 -0.3090170 563.925 -0.5000000 0.3090170 0.8090170 82.275 -0.3090170 0.8090170 -0.5000000 215.400 52 'point symmetry operation' ? ? -0.8090170 0.5000000 -0.3090170 348.525 0.5000000 0.3090170 -0.8090170 215.400 -0.3090170 -0.8090170 -0.5000000 563.925 53 'point symmetry operation' ? ? 0.3090170 -0.8090170 0.5000000 215.400 -0.8090170 -0.5000000 -0.3090170 563.925 0.5000000 -0.3090170 -0.8090170 348.525 54 'point symmetry operation' ? ? 0.3090170 0.8090170 0.5000000 -133.125 0.8090170 -0.5000000 0.3090170 82.275 0.5000000 0.3090170 -0.8090170 215.400 55 'point symmetry operation' ? ? -1.0000000 -0.0000000 0.0000000 430.800 0.0000000 -1.0000000 -0.0000000 430.800 0.0000000 -0.0000000 1.0000000 0.000 56 'point symmetry operation' ? ? -1.0000000 0.0000000 0.0000000 430.800 0.0000000 1.0000000 0.0000000 -0.000 -0.0000000 0.0000000 -1.0000000 430.800 57 'point symmetry operation' ? ? -0.8090170 0.5000000 0.3090170 215.400 0.5000000 0.3090170 0.8090170 -133.125 0.3090170 0.8090170 -0.5000000 82.275 58 'point symmetry operation' ? ? -0.8090170 -0.5000000 0.3090170 430.800 -0.5000000 0.3090170 -0.8090170 430.800 0.3090170 -0.8090170 -0.5000000 430.800 59 'point symmetry operation' ? ? -0.5000000 0.3090170 0.8090170 82.275 0.3090170 -0.8090170 0.5000000 215.400 0.8090170 0.5000000 0.3090170 -133.125 60 'point symmetry operation' ? ? -0.5000000 -0.3090170 0.8090170 215.400 -0.3090170 -0.8090170 -0.5000000 563.925 0.8090170 -0.5000000 0.3090170 82.275 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-15 2 'Structure model' 1 1 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_database_2.pdbx_DOI' 13 2 'Structure model' '_database_2.pdbx_database_accession' 14 2 'Structure model' '_pdbx_struct_oper_list.name' 15 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # _em_3d_fitting.entry_id 6S44 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6S44 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 5156 _em_3d_reconstruction.resolution 3.19 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Faba bean necrotic stunt virus' _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6S44 _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 40 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6S44 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI POLARA 300' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate STRAIN _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6S44 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6S44 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 6S44 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 88 ? ? 60.01 83.14 2 1 TYR A 169 ? ? -118.72 51.97 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A VAL 2 ? A VAL 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A ASN 4 ? A ASN 4 5 1 Y 1 A TRP 5 ? A TRP 5 6 1 Y 1 A ASN 6 ? A ASN 6 7 1 Y 1 A TRP 7 ? A TRP 7 8 1 Y 1 A SER 8 ? A SER 8 9 1 Y 1 A GLY 9 ? A GLY 9 10 1 Y 1 A LYS 10 ? A LYS 10 11 1 Y 1 A LYS 11 ? A LYS 11 12 1 Y 1 A GLY 12 ? A GLY 12 13 1 Y 1 A ARG 13 ? A ARG 13 14 1 Y 1 A ARG 14 ? A ARG 14 15 1 Y 1 A THR 15 ? A THR 15 16 1 Y 1 A PRO 16 ? A PRO 16 17 1 Y 1 A ARG 17 ? A ARG 17 18 1 Y 1 A ARG 18 ? A ARG 18 19 1 Y 1 A GLY 19 ? A GLY 19 20 1 Y 1 A TYR 20 ? A TYR 20 21 1 Y 1 A THR 21 ? A THR 21 22 1 Y 1 A ARG 22 ? A ARG 22 23 1 Y 1 A PRO 23 ? A PRO 23 24 1 Y 1 A PHE 24 ? A PHE 24 25 1 Y 1 A LYS 25 ? A LYS 25 26 1 Y 1 A SER 26 ? A SER 26 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 283824 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Faba bean necrotic stunt virus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? RELION 3 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.15.2 ? 1 ? 14 'MODEL REFINEMENT' ? Coot 0.9-pre ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_shell.id 1 _em_virus_shell.entity_assembly_id 1 _em_virus_shell.diameter ? _em_virus_shell.name capsid _em_virus_shell.triangulation 3 # _pdbx_audit_support.funding_organization 'French National Research Agency' _pdbx_audit_support.country France _pdbx_audit_support.grant_number 'ANR-14- 15 CE02-0014' _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #