HEADER NUCLEAR PROTEIN 28-JUN-19 6S4U TITLE LXRBETA LIGAND BINDING DOMAIN IN COMLPEX WITH SMALL MOLECULE TITLE 2 INHIBITORS CAVEAT 6S4U KVK A 501 HAS WRONG CHIRALITY AT ATOM C5 KVK B 501 HAS WRONG CAVEAT 2 6S4U CHIRALITY AT ATOM C5 KVK C 501 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 6S4U C5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYSTEROLS RECEPTOR LXR-BETA; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: LIVER X RECEPTOR BETA,NUCLEAR RECEPTOR NER,NUCLEAR RECEPTOR COMPND 5 SUBFAMILY 1 GROUP H MEMBER 2,UBIQUITOUSLY-EXPRESSED NUCLEAR RECEPTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1H2, LXRB, NER, UNR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LIVER X RECEPTOR BETA LXRB LXR BETA NUCLEAR HORMONE RECEPTOR RECEPTOR KEYWDS 2 LIGAND BINDING DOMAIN, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SANDMARK,A.JANSSON REVDAT 2 18-DEC-19 6S4U 1 JRNL REVDAT 1 27-NOV-19 6S4U 0 JRNL AUTH A.Y.BELORUSOVA,E.EVERTSSON,D.HOVDAL,J.SANDMARK,E.BRATT, JRNL AUTH 2 I.MAXVALL,I.G.SCHULMAN,P.AKERBLAD,E.L.LINDSTEDT JRNL TITL STRUCTURAL ANALYSIS IDENTIFIES AN ESCAPE ROUTE FROM THE JRNL TITL 2 ADVERSE LIPOGENIC EFFECTS OF LIVER X RECEPTOR LIGANDS. JRNL REF COMMUN BIOL V. 2 431 2019 JRNL REFN ESSN 2399-3642 JRNL PMID 31799433 JRNL DOI 10.1038/S42003-019-0675-0 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 2015/10/01 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 761 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2144 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5742 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.22500 REMARK 3 B22 (A**2) : 3.22500 REMARK 3 B33 (A**2) : -10.46100 REMARK 3 B12 (A**2) : 1.61200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.611 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.342 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5644 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5341 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7686 ; 1.593 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12159 ; 4.095 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 696 ; 2.039 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;39.331 ;23.852 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 896 ;19.274 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;15.540 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 884 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6363 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1284 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1968 ; 0.160 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 73 ; 0.236 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5112 ; 0.154 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 52 ; 0.068 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2805 ; 3.883 ; 7.371 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2804 ; 3.783 ; 7.369 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3494 ; 4.328 ;10.971 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3495 ; 4.343 ;10.974 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2839 ; 7.097 ; 7.966 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2738 ; 7.224 ; 7.977 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4192 ; 9.504 ;11.664 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4043 ; 9.671 ;11.668 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : Chains A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : Chains A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : Chains B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6S4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292103132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.810 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: UNKNOWN., VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.36933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.68467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.68467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.36933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 217 REMARK 465 VAL A 218 REMARK 465 LEU A 254 REMARK 465 GLY A 255 REMARK 465 ALA A 256 REMARK 465 ASP A 257 REMARK 465 PRO A 258 REMARK 465 HIS A 460 REMARK 465 GLU A 461 REMARK 465 GLY B 217 REMARK 465 VAL B 218 REMARK 465 LEU B 254 REMARK 465 GLY B 255 REMARK 465 ALA B 256 REMARK 465 ASP B 257 REMARK 465 PRO B 258 REMARK 465 GLN B 259 REMARK 465 SER B 260 REMARK 465 ARG B 261 REMARK 465 HIS B 460 REMARK 465 GLU B 461 REMARK 465 GLY C 217 REMARK 465 SER C 244 REMARK 465 ASP C 245 REMARK 465 GLN C 246 REMARK 465 LEU C 254 REMARK 465 GLY C 255 REMARK 465 ALA C 256 REMARK 465 ASP C 257 REMARK 465 PRO C 258 REMARK 465 HIS C 460 REMARK 465 GLU C 461 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 230 CG CD OE1 NE2 REMARK 480 LEU A 236 CG CD1 CD2 REMARK 480 GLN A 237 CG CD OE1 NE2 REMARK 480 LYS A 240 CE NZ REMARK 480 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 246 CG CD OE1 NE2 REMARK 480 LYS A 248 CG CD CE NZ REMARK 480 ARG A 261 NE CZ NH1 NH2 REMARK 480 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 265 CB CG CD OE1 NE2 REMARK 480 GLN A 266 CG CD OE1 NE2 REMARK 480 LYS A 287 CE NZ REMARK 480 GLU A 323 CD OE1 OE2 REMARK 480 LYS A 331 CG CD CE NZ REMARK 480 ASP A 332 CG OD1 OD2 REMARK 480 ARG A 342 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 411 NE CZ NH1 NH2 REMARK 480 GLN A 413 CG CD OE1 NE2 REMARK 480 GLN A 415 CG CD OE1 NE2 REMARK 480 GLU A 437 CD OE1 OE2 REMARK 480 ARG A 443 CG CD NE CZ NH1 NH2 REMARK 480 LEU A 444 CG CD1 CD2 REMARK 480 ASP A 446 CG OD1 OD2 REMARK 480 LYS A 447 CD CE NZ REMARK 480 LYS A 448 CG CD CE NZ REMARK 480 GLU A 455 CD OE1 OE2 REMARK 480 MET B 227 CE REMARK 480 GLN B 237 CG CD OE1 NE2 REMARK 480 LYS B 240 CB CG CD CE NZ REMARK 480 ARG B 241 CG CD NE CZ NH1 NH2 REMARK 480 PHE B 243 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS B 248 CG CD CE NZ REMARK 480 ASP B 262 CG OD1 OD2 REMARK 480 ARG B 264 CG CD NE CZ NH1 NH2 REMARK 480 GLN B 265 CB CG CD OE1 NE2 REMARK 480 GLN B 266 CG CD OE1 NE2 REMARK 480 ARG B 267 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 297 CD NE CZ NH1 NH2 REMARK 480 GLU B 323 CG CD OE1 OE2 REMARK 480 LYS B 331 CG CD CE NZ REMARK 480 LYS B 337 CG CD CE NZ REMARK 480 ARG B 411 NE CZ NH1 NH2 REMARK 480 GLN B 413 CG CD OE1 NE2 REMARK 480 GLN B 415 CG CD OE1 NE2 REMARK 480 ARG B 443 CG CD NE CZ NH1 NH2 REMARK 480 ASP B 446 CG OD1 OD2 REMARK 480 LYS B 447 CD CE NZ REMARK 480 LYS B 448 CG CD CE NZ REMARK 480 GLU B 455 CD OE1 OE2 REMARK 480 GLN C 219 CD OE1 NE2 REMARK 480 GLU C 225 CD OE1 OE2 REMARK 480 LYS C 240 CB CG CD CE NZ REMARK 480 ARG C 241 CD NE CZ NH1 NH2 REMARK 480 LYS C 248 CG CD CE NZ REMARK 480 ARG C 261 CG CD NE CZ NH1 NH2 REMARK 480 ASP C 262 CG OD1 OD2 REMARK 480 ARG C 264 CG CD NE CZ NH1 NH2 REMARK 480 GLN C 265 CB CG CD OE1 NE2 REMARK 480 GLN C 266 CG CD OE1 NE2 REMARK 480 GLN C 280 CG CD OE1 NE2 REMARK 480 LYS C 287 CD CE NZ REMARK 480 ARG C 297 CG CD NE CZ NH1 NH2 REMARK 480 LYS C 305 CD CE NZ REMARK 480 GLU C 323 CG CD OE1 OE2 REMARK 480 LYS C 331 CG CD CE NZ REMARK 480 ASP C 332 CG OD1 OD2 REMARK 480 LYS C 337 CE NZ REMARK 480 GLU C 348 CG CD OE1 OE2 REMARK 480 ARG C 361 NE CZ NH1 NH2 REMARK 480 GLN C 413 CG CD OE1 NE2 REMARK 480 LEU C 442 CG CD1 CD2 REMARK 480 ARG C 443 NE CZ NH1 NH2 REMARK 480 LEU C 444 CG CD1 CD2 REMARK 480 GLN C 445 CG CD OE1 NE2 REMARK 480 LYS C 447 CD CE NZ REMARK 480 LYS C 448 CG CD CE NZ REMARK 480 GLU C 455 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 245 56.66 -103.56 REMARK 500 LYS A 248 35.80 -95.63 REMARK 500 ARG A 261 135.32 67.61 REMARK 500 ASP A 262 -49.62 71.62 REMARK 500 LEU A 330 -122.69 62.58 REMARK 500 LYS A 331 -62.67 -96.92 REMARK 500 PHE A 333 93.87 -69.38 REMARK 500 TRP A 457 50.60 -114.72 REMARK 500 GLN B 246 80.67 -174.65 REMARK 500 PRO B 247 -133.78 14.76 REMARK 500 LYS B 248 111.77 -22.68 REMARK 500 VAL B 249 -54.72 -149.05 REMARK 500 THR B 250 86.66 76.94 REMARK 500 LEU B 330 -79.75 69.66 REMARK 500 LYS B 331 -46.86 -157.73 REMARK 500 TRP B 457 50.36 -114.95 REMARK 500 ASP C 262 -23.63 -147.31 REMARK 500 LEU C 330 -134.36 60.24 REMARK 500 PHE C 333 93.71 -62.69 REMARK 500 TRP C 457 51.75 -114.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KVK A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KVK B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KVK C 501 DBREF 6S4U A 217 461 UNP P55055 NR1H2_HUMAN 216 460 DBREF 6S4U B 217 461 UNP P55055 NR1H2_HUMAN 216 460 DBREF 6S4U C 217 461 UNP P55055 NR1H2_HUMAN 216 460 SEQRES 1 A 245 GLY VAL GLN LEU THR ALA ALA GLN GLU LEU MET ILE GLN SEQRES 2 A 245 GLN LEU VAL ALA ALA GLN LEU GLN CYS ASN LYS ARG SER SEQRES 3 A 245 PHE SER ASP GLN PRO LYS VAL THR PRO TRP PRO LEU GLY SEQRES 4 A 245 ALA ASP PRO GLN SER ARG ASP ALA ARG GLN GLN ARG PHE SEQRES 5 A 245 ALA HIS PHE THR GLU LEU ALA ILE ILE SER VAL GLN GLU SEQRES 6 A 245 ILE VAL ASP PHE ALA LYS GLN VAL PRO GLY PHE LEU GLN SEQRES 7 A 245 LEU GLY ARG GLU ASP GLN ILE ALA LEU LEU LYS ALA SER SEQRES 8 A 245 THR ILE GLU ILE MET LEU LEU GLU THR ALA ARG ARG TYR SEQRES 9 A 245 ASN HIS GLU THR GLU CYS ILE THR PHE LEU LYS ASP PHE SEQRES 10 A 245 THR TYR SER LYS ASP ASP PHE HIS ARG ALA GLY LEU GLN SEQRES 11 A 245 VAL GLU PHE ILE ASN PRO ILE PHE GLU PHE SER ARG ALA SEQRES 12 A 245 MET ARG ARG LEU GLY LEU ASP ASP ALA GLU TYR ALA LEU SEQRES 13 A 245 LEU ILE ALA ILE ASN ILE PHE SER ALA ASP ARG PRO ASN SEQRES 14 A 245 VAL GLN GLU PRO GLY ARG VAL GLU ALA LEU GLN GLN PRO SEQRES 15 A 245 TYR VAL GLU ALA LEU LEU SER TYR THR ARG ILE LYS ARG SEQRES 16 A 245 PRO GLN ASP GLN LEU ARG PHE PRO ARG MET LEU MET LYS SEQRES 17 A 245 LEU VAL SER LEU ARG THR LEU SER SER VAL HIS SER GLU SEQRES 18 A 245 GLN VAL PHE ALA LEU ARG LEU GLN ASP LYS LYS LEU PRO SEQRES 19 A 245 PRO LEU LEU SER GLU ILE TRP ASP VAL HIS GLU SEQRES 1 B 245 GLY VAL GLN LEU THR ALA ALA GLN GLU LEU MET ILE GLN SEQRES 2 B 245 GLN LEU VAL ALA ALA GLN LEU GLN CYS ASN LYS ARG SER SEQRES 3 B 245 PHE SER ASP GLN PRO LYS VAL THR PRO TRP PRO LEU GLY SEQRES 4 B 245 ALA ASP PRO GLN SER ARG ASP ALA ARG GLN GLN ARG PHE SEQRES 5 B 245 ALA HIS PHE THR GLU LEU ALA ILE ILE SER VAL GLN GLU SEQRES 6 B 245 ILE VAL ASP PHE ALA LYS GLN VAL PRO GLY PHE LEU GLN SEQRES 7 B 245 LEU GLY ARG GLU ASP GLN ILE ALA LEU LEU LYS ALA SER SEQRES 8 B 245 THR ILE GLU ILE MET LEU LEU GLU THR ALA ARG ARG TYR SEQRES 9 B 245 ASN HIS GLU THR GLU CYS ILE THR PHE LEU LYS ASP PHE SEQRES 10 B 245 THR TYR SER LYS ASP ASP PHE HIS ARG ALA GLY LEU GLN SEQRES 11 B 245 VAL GLU PHE ILE ASN PRO ILE PHE GLU PHE SER ARG ALA SEQRES 12 B 245 MET ARG ARG LEU GLY LEU ASP ASP ALA GLU TYR ALA LEU SEQRES 13 B 245 LEU ILE ALA ILE ASN ILE PHE SER ALA ASP ARG PRO ASN SEQRES 14 B 245 VAL GLN GLU PRO GLY ARG VAL GLU ALA LEU GLN GLN PRO SEQRES 15 B 245 TYR VAL GLU ALA LEU LEU SER TYR THR ARG ILE LYS ARG SEQRES 16 B 245 PRO GLN ASP GLN LEU ARG PHE PRO ARG MET LEU MET LYS SEQRES 17 B 245 LEU VAL SER LEU ARG THR LEU SER SER VAL HIS SER GLU SEQRES 18 B 245 GLN VAL PHE ALA LEU ARG LEU GLN ASP LYS LYS LEU PRO SEQRES 19 B 245 PRO LEU LEU SER GLU ILE TRP ASP VAL HIS GLU SEQRES 1 C 245 GLY VAL GLN LEU THR ALA ALA GLN GLU LEU MET ILE GLN SEQRES 2 C 245 GLN LEU VAL ALA ALA GLN LEU GLN CYS ASN LYS ARG SER SEQRES 3 C 245 PHE SER ASP GLN PRO LYS VAL THR PRO TRP PRO LEU GLY SEQRES 4 C 245 ALA ASP PRO GLN SER ARG ASP ALA ARG GLN GLN ARG PHE SEQRES 5 C 245 ALA HIS PHE THR GLU LEU ALA ILE ILE SER VAL GLN GLU SEQRES 6 C 245 ILE VAL ASP PHE ALA LYS GLN VAL PRO GLY PHE LEU GLN SEQRES 7 C 245 LEU GLY ARG GLU ASP GLN ILE ALA LEU LEU LYS ALA SER SEQRES 8 C 245 THR ILE GLU ILE MET LEU LEU GLU THR ALA ARG ARG TYR SEQRES 9 C 245 ASN HIS GLU THR GLU CYS ILE THR PHE LEU LYS ASP PHE SEQRES 10 C 245 THR TYR SER LYS ASP ASP PHE HIS ARG ALA GLY LEU GLN SEQRES 11 C 245 VAL GLU PHE ILE ASN PRO ILE PHE GLU PHE SER ARG ALA SEQRES 12 C 245 MET ARG ARG LEU GLY LEU ASP ASP ALA GLU TYR ALA LEU SEQRES 13 C 245 LEU ILE ALA ILE ASN ILE PHE SER ALA ASP ARG PRO ASN SEQRES 14 C 245 VAL GLN GLU PRO GLY ARG VAL GLU ALA LEU GLN GLN PRO SEQRES 15 C 245 TYR VAL GLU ALA LEU LEU SER TYR THR ARG ILE LYS ARG SEQRES 16 C 245 PRO GLN ASP GLN LEU ARG PHE PRO ARG MET LEU MET LYS SEQRES 17 C 245 LEU VAL SER LEU ARG THR LEU SER SER VAL HIS SER GLU SEQRES 18 C 245 GLN VAL PHE ALA LEU ARG LEU GLN ASP LYS LYS LEU PRO SEQRES 19 C 245 PRO LEU LEU SER GLU ILE TRP ASP VAL HIS GLU HET KVK A 501 32 HET KVK B 501 32 HET KVK C 501 32 HETNAM KVK 6-[4-[[3-OXIDANYL-1,1-BIS(OXIDANYLIDENE)-5-PHENYL-2- HETNAM 2 KVK PROPAN-2-YL-3~{H}-1,2-THIAZOL-4- HETNAM 3 KVK YL]AMINO]BUTYL]PYRIDINE-2-SULFONAMIDE FORMUL 4 KVK 3(C21 H28 N4 O5 S2) FORMUL 7 HOH *18(H2 O) HELIX 1 AA1 THR A 221 ASP A 245 1 25 HELIX 2 AA2 ASP A 262 GLN A 288 1 27 HELIX 3 AA3 GLY A 291 LEU A 295 5 5 HELIX 4 AA4 GLY A 296 ARG A 319 1 24 HELIX 5 AA5 SER A 336 ALA A 343 1 8 HELIX 6 AA6 GLN A 346 GLY A 364 1 19 HELIX 7 AA7 ASP A 366 PHE A 379 1 14 HELIX 8 AA8 GLU A 388 ARG A 411 1 24 HELIX 9 AA9 LEU A 416 GLN A 445 1 30 HELIX 10 AB1 PRO A 450 TRP A 457 1 8 HELIX 11 AB2 THR B 221 PHE B 243 1 23 HELIX 12 AB3 ALA B 263 GLN B 288 1 26 HELIX 13 AB4 GLY B 296 ARG B 319 1 24 HELIX 14 AB5 SER B 336 ALA B 343 1 8 HELIX 15 AB6 GLN B 346 GLY B 364 1 19 HELIX 16 AB7 ASP B 366 PHE B 379 1 14 HELIX 17 AB8 GLU B 388 ARG B 411 1 24 HELIX 18 AB9 LEU B 416 GLN B 445 1 30 HELIX 19 AC1 PRO B 450 TRP B 457 1 8 HELIX 20 AC2 THR C 221 PHE C 243 1 23 HELIX 21 AC3 ASP C 262 GLN C 288 1 27 HELIX 22 AC4 GLY C 296 ARG C 319 1 24 HELIX 23 AC5 SER C 336 ALA C 343 1 8 HELIX 24 AC6 GLN C 346 GLY C 364 1 19 HELIX 25 AC7 ASP C 366 PHE C 379 1 14 HELIX 26 AC8 GLU C 388 ARG C 411 1 24 HELIX 27 AC9 LEU C 416 GLN C 445 1 30 HELIX 28 AD1 PRO C 450 TRP C 457 1 8 SHEET 1 AA1 3 TYR A 320 ASN A 321 0 SHEET 2 AA1 3 CYS A 326 PHE A 329 -1 O CYS A 326 N ASN A 321 SHEET 3 AA1 3 PHE A 333 TYR A 335 -1 O TYR A 335 N ILE A 327 SHEET 1 AA2 3 TYR B 320 ASN B 321 0 SHEET 2 AA2 3 CYS B 326 PHE B 329 -1 O CYS B 326 N ASN B 321 SHEET 3 AA2 3 PHE B 333 TYR B 335 -1 O TYR B 335 N ILE B 327 SHEET 1 AA3 3 TYR C 320 ASN C 321 0 SHEET 2 AA3 3 CYS C 326 PHE C 329 -1 O CYS C 326 N ASN C 321 SHEET 3 AA3 3 PHE C 333 TYR C 335 -1 O TYR C 335 N ILE C 327 CISPEP 1 GLN B 246 PRO B 247 0 0.11 SITE 1 AC1 18 PHE A 271 THR A 272 LEU A 274 ALA A 275 SITE 2 AC1 18 SER A 278 GLU A 281 MET A 312 GLU A 315 SITE 3 AC1 18 THR A 316 ARG A 319 PHE A 329 LEU A 330 SITE 4 AC1 18 PHE A 340 LEU A 345 PHE A 349 HIS A 435 SITE 5 AC1 18 LEU A 442 LEU A 449 SITE 1 AC2 16 SER B 242 PHE B 271 THR B 272 LEU B 274 SITE 2 AC2 16 SER B 278 GLU B 281 MET B 312 GLU B 315 SITE 3 AC2 16 THR B 316 ARG B 319 PHE B 329 LEU B 330 SITE 4 AC2 16 LEU B 345 PHE B 349 HIS B 435 LEU B 449 SITE 1 AC3 16 PHE C 271 LEU C 274 ALA C 275 SER C 278 SITE 2 AC3 16 GLU C 281 MET C 312 GLU C 315 THR C 316 SITE 3 AC3 16 ARG C 319 PHE C 329 LEU C 330 PHE C 340 SITE 4 AC3 16 LEU C 345 PHE C 349 ILE C 353 HIS C 435 CRYST1 125.086 125.086 137.054 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007994 0.004616 0.000000 0.00000 SCALE2 0.000000 0.009231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007296 0.00000