HEADER SUGAR BINDING PROTEIN 02-JUL-19 6S5S TITLE CFUCOSYLATED SECOND GENERATION PEPTIDE DENDRIMER SBD8 BOUND TO FUCOSE TITLE 2 BINDING LECTIN LECB (PA-IIL) FROM PSEUDOMONAS AERUGINOSA AT 1.43 TITLE 3 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FUCOSE-BINDING LECTIN II (PA-IIL),FUCOSE-BINDING LECTIN PA- COMPND 5 IIL; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FUCOSE BINDING LECTIN LECB (PA-IIL) FROM PSEUDOMONAS COMPND 8 AERUGINOSA; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SBD8 CHAIN B; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: CFUCOSYLATED PEPTIDE DENDRIMER SBD8, CHAIN B; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: SBD8 CHAIN C; COMPND 16 CHAIN: C, E; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: CFUCOSYLATED PEPTIDE DENDRIMER SBD8, CHAIN C; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: SBD8 CHAIN D; COMPND 21 CHAIN: D; COMPND 22 ENGINEERED: YES; COMPND 23 OTHER_DETAILS: CFUCOSYLATED PEPTIDE DENDRIMER SBD8, CHAIN D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LECB, C0044_25260, CAZ10_21840, DT376_00595, DY979_15445, SOURCE 5 ECC04_10105, EFK27_13700, EGV95_09240, EGY23_15550, IPC669_23070, SOURCE 6 PA5486_01888, PAERUG_E15_LONDON_28_01_14_00983, PAMH19_1713, SOURCE 7 RW109_RW109_02453; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 13 ORGANISM_TAXID: 32644; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 17 ORGANISM_TAXID: 32644; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 21 ORGANISM_TAXID: 32644 KEYWDS LECTIN, FUCOSYLATED, DENDRIMER, SECOND GENERATION, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.BAERISWYL,A.STOCKER,J.-L.REYMOND REVDAT 3 24-JAN-24 6S5S 1 REMARK REVDAT 2 29-JUL-20 6S5S 1 REMARK LINK SITE REVDAT 1 21-AUG-19 6S5S 0 JRNL AUTH S.BAERISWYL,S.JAVOR,A.STOCKER,T.DARBRE,J.-L.REYMOND JRNL TITL X-RAY CRYSTAL STRUCTURE OF A SECOND GENERATION PEPTIDE JRNL TITL 2 DENDRIMER IN COMPLEX WITH PSEUDOMONAS AERUGINOSA LECTIN LECB JRNL REF HELV.CHIM.ACTA 2019 JRNL REFN ISSN 0018-019X JRNL DOI 10.1002/HLCA.201900178 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 66035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5451 - 4.1324 1.00 2643 135 0.1804 0.1822 REMARK 3 2 4.1324 - 3.2802 1.00 2646 137 0.1342 0.1537 REMARK 3 3 3.2802 - 2.8656 1.00 2613 140 0.1466 0.1501 REMARK 3 4 2.8656 - 2.6036 1.00 2624 136 0.1447 0.1608 REMARK 3 5 2.6036 - 2.4170 1.00 2634 139 0.1403 0.1563 REMARK 3 6 2.4170 - 2.2745 1.00 2623 142 0.1289 0.1209 REMARK 3 7 2.2745 - 2.1606 1.00 2631 135 0.1297 0.1611 REMARK 3 8 2.1606 - 2.0665 1.00 2630 139 0.1266 0.1514 REMARK 3 9 2.0665 - 1.9870 1.00 2627 135 0.1302 0.1879 REMARK 3 10 1.9870 - 1.9184 1.00 2626 136 0.1384 0.1654 REMARK 3 11 1.9184 - 1.8584 1.00 2625 134 0.1422 0.1395 REMARK 3 12 1.8584 - 1.8053 1.00 2625 141 0.1459 0.1617 REMARK 3 13 1.8053 - 1.7578 1.00 2655 138 0.1558 0.1830 REMARK 3 14 1.7578 - 1.7149 1.00 2586 139 0.1735 0.1760 REMARK 3 15 1.7149 - 1.6759 1.00 2609 139 0.1805 0.1947 REMARK 3 16 1.6759 - 1.6402 1.00 2651 135 0.1928 0.2270 REMARK 3 17 1.6402 - 1.6074 1.00 2636 139 0.2169 0.2322 REMARK 3 18 1.6074 - 1.5771 1.00 2606 136 0.2264 0.2406 REMARK 3 19 1.5771 - 1.5489 1.00 2620 138 0.2373 0.2605 REMARK 3 20 1.5489 - 1.5227 1.00 2670 139 0.2448 0.2719 REMARK 3 21 1.5227 - 1.4981 1.00 2594 137 0.2737 0.2663 REMARK 3 22 1.4981 - 1.4751 1.00 2646 142 0.3014 0.3008 REMARK 3 23 1.4751 - 1.4534 0.97 2512 131 0.3470 0.3456 REMARK 3 24 1.4534 - 1.4329 0.92 2411 130 0.3729 0.4385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 994 REMARK 3 ANGLE : 1.564 1349 REMARK 3 CHIRALITY : 0.162 170 REMARK 3 PLANARITY : 0.012 178 REMARK 3 DIHEDRAL : 17.030 333 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.5472 12.1236 6.9707 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.0806 REMARK 3 T33: 0.0997 T12: -0.0098 REMARK 3 T13: -0.0229 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.2630 L22: 0.4837 REMARK 3 L33: 1.4446 L12: -0.2876 REMARK 3 L13: -0.8675 L23: -0.1154 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0103 S13: 0.0504 REMARK 3 S21: -0.0087 S22: 0.0026 S23: -0.0790 REMARK 3 S31: -0.0003 S32: 0.0077 S33: -0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.7038 19.1610 9.5727 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.0709 REMARK 3 T33: 0.1265 T12: -0.0013 REMARK 3 T13: -0.0099 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 7.3825 L22: 0.1455 REMARK 3 L33: 1.0858 L12: -0.6153 REMARK 3 L13: -0.4635 L23: 0.4010 REMARK 3 S TENSOR REMARK 3 S11: -0.0683 S12: -0.1355 S13: -0.0066 REMARK 3 S21: 0.0300 S22: 0.0937 S23: -0.0313 REMARK 3 S31: -0.0320 S32: 0.0174 S33: -0.0323 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.7459 11.5606 11.8519 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1778 REMARK 3 T33: 0.1395 T12: 0.0129 REMARK 3 T13: -0.0216 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 6.0665 L22: 1.7890 REMARK 3 L33: 4.6748 L12: -2.3183 REMARK 3 L13: -5.2731 L23: 1.7845 REMARK 3 S TENSOR REMARK 3 S11: -0.2803 S12: -0.3602 S13: -0.3700 REMARK 3 S21: 0.1653 S22: 0.1305 S23: -0.0224 REMARK 3 S31: 0.1861 S32: 0.2559 S33: 0.0688 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.8800 15.4501 23.2521 REMARK 3 T TENSOR REMARK 3 T11: 0.4180 T22: 0.2680 REMARK 3 T33: 0.1623 T12: 0.0879 REMARK 3 T13: -0.0337 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 6.3596 L22: 1.9764 REMARK 3 L33: 0.5722 L12: 2.4333 REMARK 3 L13: 1.4597 L23: 1.0535 REMARK 3 S TENSOR REMARK 3 S11: -0.3547 S12: -1.1577 S13: 0.6987 REMARK 3 S21: 1.4075 S22: -0.0499 S23: 0.3310 REMARK 3 S31: -0.6297 S32: -0.6641 S33: 0.2804 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.6091 6.8883 6.8228 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.0893 REMARK 3 T33: 0.0927 T12: 0.0032 REMARK 3 T13: -0.0042 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.8943 L22: 1.6305 REMARK 3 L33: 1.4837 L12: -0.8096 REMARK 3 L13: -0.5473 L23: 1.3746 REMARK 3 S TENSOR REMARK 3 S11: -0.0611 S12: -0.0419 S13: -0.0072 REMARK 3 S21: 0.0905 S22: 0.0673 S23: 0.0039 REMARK 3 S31: 0.0756 S32: -0.0031 S33: 0.0033 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.4180 12.2790 0.3297 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.1222 REMARK 3 T33: 0.1155 T12: -0.0033 REMARK 3 T13: -0.0024 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.4630 L22: 0.7900 REMARK 3 L33: 1.9639 L12: -0.0133 REMARK 3 L13: -1.8508 L23: 0.2428 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: 0.1220 S13: 0.0196 REMARK 3 S21: -0.0178 S22: 0.0767 S23: -0.0225 REMARK 3 S31: 0.0323 S32: -0.0525 S33: 0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66042 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.433 REMARK 200 RESOLUTION RANGE LOW (A) : 48.517 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 17.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 1OXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 3.0 M SODIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 520 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 533 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 546 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LYS E 2 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 ASN A 34 O HOH A 518 1.55 REMARK 500 O HOH A 486 O HOH A 528 1.93 REMARK 500 O HOH A 403 O HOH A 467 1.98 REMARK 500 O HOH A 460 O HOH A 535 2.06 REMARK 500 OD1 ASN A 33 O HOH A 401 2.12 REMARK 500 O HOH A 408 O HOH A 461 2.16 REMARK 500 O HOH A 408 O HOH A 512 2.17 REMARK 500 OE1 GLN A 43 O HOH A 402 2.17 REMARK 500 NG DPP B 7 O LYS D 6 2.18 REMARK 500 O HOH A 410 O HOH A 518 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 72 NH2 ARG A 72 11456 1.62 REMARK 500 O HOH A 407 O HOH A 407 4455 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -42.26 -144.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 144.4 REMARK 620 3 ASP A 101 OD2 153.2 45.8 REMARK 620 4 ASN A 103 OD1 86.3 70.8 75.7 REMARK 620 5 ASP A 104 OD1 83.2 69.6 115.3 88.2 REMARK 620 6 GLY A 114 O 56.4 97.8 103.7 29.9 85.6 REMARK 620 7 ZDC C 101 O3 132.1 63.7 73.5 134.6 76.0 157.5 REMARK 620 8 ZDC C 101 O2 78.6 128.5 113.3 160.1 102.7 133.2 65.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 54.1 REMARK 620 3 ASP A 99 OD1 86.8 81.2 REMARK 620 4 ASP A 101 OD1 77.9 130.8 86.5 REMARK 620 5 ASP A 104 OD1 117.3 130.9 146.9 77.7 REMARK 620 6 ASP A 104 OD2 83.5 79.8 160.9 107.4 51.6 REMARK 620 7 ZDC C 101 O3 149.4 144.9 77.2 75.2 70.7 118.4 REMARK 620 8 ZDC C 101 O4 141.2 87.9 95.1 140.8 80.2 82.4 67.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6S5P RELATED DB: PDB REMARK 900 RELATED ID: 6S5R RELATED DB: PDB REMARK 900 RELATED ID: 5D2A RELATED DB: PDB DBREF1 6S5S A 0 114 UNP A0A069Q9V4_PSEAI DBREF2 6S5S A A0A069Q9V4 1 115 DBREF 6S5S B 1 7 PDB 6S5S 6S5S 1 7 DBREF 6S5S C 2 4 PDB 6S5S 6S5S 2 4 DBREF 6S5S D 1 6 PDB 6S5S 6S5S 1 6 DBREF 6S5S E 2 4 PDB 6S5S 6S5S 2 4 SEQRES 1 A 115 MET ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR SEQRES 2 A 115 ARG PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR SEQRES 3 A 115 GLN THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA SEQRES 4 A 115 THR PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY SEQRES 5 A 115 THR GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN SEQRES 6 A 115 VAL GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SEQRES 7 A 115 SER ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA SEQRES 8 A 115 LEU VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN SEQRES 9 A 115 ASP ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 7 LYS PRO LEU DPP PHE LYS DPP SEQRES 1 C 3 LYS PRO LEU SEQRES 1 D 6 LYS PRO LEU DPP PHE LYS SEQRES 1 E 3 LYS PRO LEU HET DPP B 4 9 HET DPP B 7 9 HET DPP D 4 9 HET CA A 301 1 HET CA A 302 1 HET NH2 B 101 3 HET ZDC C 101 25 HETNAM DPP DIAMINOPROPANOIC ACID HETNAM CA CALCIUM ION HETNAM NH2 AMINO GROUP HETNAM ZDC 3,7-ANHYDRO-2,8-DIDEOXY-L-GLYCERO-D-GLUCO-OCTONIC ACID FORMUL 2 DPP 3(C3 H8 N2 O2) FORMUL 6 CA 2(CA 2+) FORMUL 8 NH2 H2 N FORMUL 9 ZDC C8 H14 O6 FORMUL 10 HOH *159(H2 O) HELIX 1 AA1 PRO D 2 LYS D 6 5 5 SHEET 1 AA1 4 VAL A 5 THR A 7 0 SHEET 2 AA1 4 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA1 4 GLN A 26 VAL A 32 -1 N LEU A 31 O GLN A 64 SHEET 4 AA1 4 GLU A 35 GLY A 42 -1 O ALA A 37 N VAL A 30 SHEET 1 AA2 3 VAL A 5 THR A 7 0 SHEET 2 AA2 3 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA2 3 ARG A 72 PRO A 73 -1 O ARG A 72 N VAL A 69 SHEET 1 AA3 5 ALA A 48 ASN A 56 0 SHEET 2 AA3 5 ARG A 13 ALA A 20 -1 N PHE A 14 O LEU A 55 SHEET 3 AA3 5 ALA A 105 TRP A 111 -1 O VAL A 106 N PHE A 19 SHEET 4 AA3 5 LEU A 87 GLU A 95 -1 N ALA A 90 O ILE A 109 SHEET 5 AA3 5 ASP A 75 LEU A 83 -1 N ALA A 79 O LEU A 91 LINK C LEU B 3 N DPP B 4 1555 1555 1.33 LINK C DPP B 4 N PHE B 5 1555 1555 1.33 LINK NG DPP B 4 C LEU C 4 1555 1555 1.34 LINK C LYS B 6 N DPP B 7 1555 1555 1.31 LINK C DPP B 7 N NH2 B 101 1555 1555 1.34 LINK NG DPP B 7 C LYS D 6 1555 1555 1.29 LINK N LYS C 2 C7 ZDC C 101 1555 1555 1.22 LINK C LEU D 3 N DPP D 4 1555 1555 1.32 LINK C DPP D 4 N PHE D 5 1555 1555 1.33 LINK NG DPP D 4 C LEU E 4 1555 1555 1.38 LINK O ASN A 21 CA CA A 302 1555 1555 2.34 LINK OE1 GLU A 95 CA CA A 301 1555 1555 2.45 LINK OE2 GLU A 95 CA CA A 301 1555 1555 2.41 LINK OD1 ASP A 99 CA CA A 301 1555 1555 2.37 LINK OD1 ASP A 101 CA CA A 301 1555 1555 2.36 LINK OD1 ASP A 101 CA CA A 302 1555 1555 3.05 LINK OD2 ASP A 101 CA CA A 302 1555 1555 2.45 LINK OD1 ASN A 103 CA CA A 302 1555 1555 2.32 LINK OD1 ASP A 104 CA CA A 301 1555 1555 2.63 LINK OD2 ASP A 104 CA CA A 301 1555 1555 2.40 LINK OD1 ASP A 104 CA CA A 302 1555 1555 2.35 LINK O GLY A 114 CA CA A 302 1555 11455 2.45 LINK CA CA A 301 O3 ZDC C 101 1555 1555 2.47 LINK CA CA A 301 O4 ZDC C 101 1555 1555 2.57 LINK CA CA A 302 O3 ZDC C 101 1555 1555 2.44 LINK CA CA A 302 O2 ZDC C 101 1555 1555 2.50 CISPEP 1 TRP A 111 PRO A 112 0 -6.47 CRYST1 106.297 106.297 57.090 90.00 90.00 120.00 P 6 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009408 0.005431 0.000000 0.00000 SCALE2 0.000000 0.010863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017516 0.00000