HEADER STRUCTURAL PROTEIN 02-JUL-19 6S5W TITLE STRUCTURE OF RIB DOMAIN 'RIB LONG' FROM LACTOBACILLUS ACIDOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURFACE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS ACIDOPHILUS; SOURCE 3 ORGANISM_TAXID: 1579; SOURCE 4 GENE: LBA1633; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PETFPP1 KEYWDS RIB DOMAIN, BACTERIAL CELL SURFACE, IMMUNOGLOBULIN FOLD, PROFILE-HMM, KEYWDS 2 DOMAIN ATROPHY, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.C.GRIFFITHS,R.E.M.COOPER,F.WHELAN,J.L.WHITTINGHAM,A.BATEMAN, AUTHOR 2 J.R.POTTS REVDAT 4 19-JUN-24 6S5W 1 REMARK REVDAT 3 21-DEC-22 6S5W 1 JRNL REVDAT 2 18-DEC-19 6S5W 1 JRNL REVDAT 1 11-DEC-19 6S5W 0 JRNL AUTH F.WHELAN,A.LAFITA,S.C.GRIFFITHS,R.E.M.COOPER, JRNL AUTH 2 J.L.WHITTINGHAM,J.P.TURKENBURG,I.W.MANFIELD,A.N.ST JOHN, JRNL AUTH 3 E.PACI,A.BATEMAN,J.R.POTTS JRNL TITL DEFINING THE REMARKABLE STRUCTURAL MALLEABILITY OF A JRNL TITL 2 BACTERIAL SURFACE PROTEIN RIB DOMAIN IMPLICATED IN JRNL TITL 3 INFECTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 26540 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31818940 JRNL DOI 10.1073/PNAS.1911776116 REMARK 2 REMARK 2 RESOLUTION. 1.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 78305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 3779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9856 - 3.2096 0.99 3015 148 0.1465 0.1790 REMARK 3 2 3.2096 - 2.5476 1.00 2912 144 0.1468 0.1782 REMARK 3 3 2.5476 - 2.2256 1.00 2888 146 0.1422 0.1792 REMARK 3 4 2.2256 - 2.0221 1.00 2874 142 0.1270 0.1508 REMARK 3 5 2.0221 - 1.8772 1.00 2831 167 0.1287 0.1481 REMARK 3 6 1.8772 - 1.7665 1.00 2871 125 0.1341 0.1546 REMARK 3 7 1.7665 - 1.6780 1.00 2822 161 0.1330 0.1575 REMARK 3 8 1.6780 - 1.6050 1.00 2811 171 0.1299 0.1682 REMARK 3 9 1.6050 - 1.5432 1.00 2833 141 0.1306 0.1530 REMARK 3 10 1.5432 - 1.4899 1.00 2825 149 0.1293 0.1832 REMARK 3 11 1.4899 - 1.4433 1.00 2810 158 0.1383 0.1933 REMARK 3 12 1.4433 - 1.4021 1.00 2817 154 0.1424 0.1740 REMARK 3 13 1.4021 - 1.3652 1.00 2830 140 0.1437 0.1851 REMARK 3 14 1.3652 - 1.3319 0.99 2813 132 0.1369 0.1729 REMARK 3 15 1.3319 - 1.3016 0.99 2807 129 0.1433 0.1812 REMARK 3 16 1.3016 - 1.2739 1.00 2800 137 0.1407 0.1750 REMARK 3 17 1.2739 - 1.2484 0.99 2797 144 0.1544 0.1939 REMARK 3 18 1.2484 - 1.2248 0.98 2764 135 0.1599 0.1708 REMARK 3 19 1.2248 - 1.2030 0.99 2765 134 0.1766 0.1711 REMARK 3 20 1.2030 - 1.1826 0.97 2754 135 0.1918 0.2264 REMARK 3 21 1.1826 - 1.1635 0.98 2744 137 0.2044 0.2021 REMARK 3 22 1.1635 - 1.1456 0.96 2739 128 0.2133 0.2494 REMARK 3 23 1.1456 - 1.1287 0.95 2668 145 0.2218 0.2460 REMARK 3 24 1.1287 - 1.1128 0.94 2600 127 0.2393 0.2557 REMARK 3 25 1.1128 - 1.0978 0.91 2598 129 0.2474 0.2974 REMARK 3 26 1.0978 - 1.0835 0.85 2390 110 0.2800 0.3300 REMARK 3 27 1.0835 - 1.0700 0.76 2148 111 0.2932 0.3361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1708 REMARK 3 ANGLE : 0.881 2372 REMARK 3 CHIRALITY : 0.079 267 REMARK 3 PLANARITY : 0.008 330 REMARK 3 DIHEDRAL : 13.407 644 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292102165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78337 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.070 REMARK 200 RESOLUTION RANGE LOW (A) : 44.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.09 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, ACORN, FRAGON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULPHATE, 30% PEG 8000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.68500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.90500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.68500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.90500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.31000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.68500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.90500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.31000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.68500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.90500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1458 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1516 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1527 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1546 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1560 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1561 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1485 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1161 REMARK 465 PRO A 1162 REMARK 465 GLY B 1161 REMARK 465 PRO B 1162 REMARK 465 ALA B 1163 REMARK 465 MET B 1164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1519 O HOH A 1567 1.83 REMARK 500 O HOH B 1576 O HOH B 1583 1.87 REMARK 500 O ALA B 1168 O HOH B 1401 1.87 REMARK 500 OD2 ASP B 1254 O HOH B 1401 1.88 REMARK 500 O1 SO4 A 1301 O HOH A 1401 1.88 REMARK 500 O HOH A 1401 O HOH A 1524 1.92 REMARK 500 O HOH A 1520 O HOH A 1554 1.92 REMARK 500 O HIS B 1171 O HOH B 1401 1.92 REMARK 500 O HOH A 1445 O HOH A 1554 1.93 REMARK 500 O THR A 1206 O HOH A 1401 1.93 REMARK 500 O HOH A 1554 O HOH A 1558 1.94 REMARK 500 OD2 ASP A 1254 O HOH A 1402 1.95 REMARK 500 O HOH B 1428 O HOH B 1440 1.96 REMARK 500 O HOH A 1402 O HOH A 1486 1.97 REMARK 500 OE1 GLU B 1209 O HOH B 1402 2.02 REMARK 500 O HOH B 1505 O HOH B 1554 2.02 REMARK 500 O ASN A 1223 O HOH A 1401 2.03 REMARK 500 O HOH B 1409 O HOH B 1567 2.03 REMARK 500 O HOH B 1530 O HOH B 1567 2.04 REMARK 500 N ALA A 1163 O HOH A 1403 2.08 REMARK 500 O HOH A 1402 O HOH A 1487 2.12 REMARK 500 O HOH B 1550 O HOH B 1555 2.13 REMARK 500 O HOH A 1518 O HOH A 1569 2.13 REMARK 500 O HOH B 1534 O HOH B 1551 2.15 REMARK 500 O HOH B 1544 O HOH B 1581 2.17 REMARK 500 OE1 GLU A 1241 O HOH A 1404 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1409 O HOH B 1589 6544 1.87 REMARK 500 O HOH A 1404 O HOH A 1568 3655 1.93 REMARK 500 O GLU A 1255 O HOH A 1554 3655 1.95 REMARK 500 O HOH B 1522 O HOH B 1533 6545 2.01 REMARK 500 O HOH A 1535 O HOH B 1575 3555 2.08 REMARK 500 O HOH A 1440 O HOH B 1552 7555 2.11 REMARK 500 O THR B 1266 O HOH B 1438 6545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1595 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH B1596 DISTANCE = 6.78 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1171 O REMARK 620 2 ASN B1172 OD1 72.5 REMARK 620 3 HOH B1401 O 41.7 114.0 REMARK 620 4 HOH B1546 O 129.2 93.8 120.4 REMARK 620 5 HOH B1565 O 131.4 100.3 123.9 98.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 1301 DBREF 6S5W A 1165 1268 UNP Q5FIM8 Q5FIM8_LACAC 1165 1268 DBREF 6S5W B 1165 1268 UNP Q5FIM8 Q5FIM8_LACAC 1165 1268 SEQADV 6S5W GLY A 1161 UNP Q5FIM8 EXPRESSION TAG SEQADV 6S5W PRO A 1162 UNP Q5FIM8 EXPRESSION TAG SEQADV 6S5W ALA A 1163 UNP Q5FIM8 EXPRESSION TAG SEQADV 6S5W MET A 1164 UNP Q5FIM8 EXPRESSION TAG SEQADV 6S5W GLY B 1161 UNP Q5FIM8 EXPRESSION TAG SEQADV 6S5W PRO B 1162 UNP Q5FIM8 EXPRESSION TAG SEQADV 6S5W ALA B 1163 UNP Q5FIM8 EXPRESSION TAG SEQADV 6S5W MET B 1164 UNP Q5FIM8 EXPRESSION TAG SEQRES 1 A 108 GLY PRO ALA MET GLY GLN THR ALA ASP ASP HIS ASN PRO SEQRES 2 A 108 LYS TYR GLU ASP VAL ASP VAL LYS PRO GLY GLU THR ASN SEQRES 3 A 108 LYS VAL THR PRO THR ASN THR ASP LYS ASP GLY ASN PRO SEQRES 4 A 108 ALA ASN ILE PRO ASP GLY THR LYS PHE GLU LYS ASP PRO SEQRES 5 A 108 ASP ALA PRO SER TRP VAL GLU VAL ASP PRO ASN THR GLY SEQRES 6 A 108 GLU LEU THR VAL ALA PRO PRO GLU GLY THR PRO SER GLY SEQRES 7 A 108 GLY HIS GLU ILE LYS VAL LYS VAL THR TYR PRO ASP GLY SEQRES 8 A 108 SER THR ASP GLU VAL PRO VAL THR VAL LYS VAL SER ASP SEQRES 9 A 108 PRO THR THR PRO SEQRES 1 B 108 GLY PRO ALA MET GLY GLN THR ALA ASP ASP HIS ASN PRO SEQRES 2 B 108 LYS TYR GLU ASP VAL ASP VAL LYS PRO GLY GLU THR ASN SEQRES 3 B 108 LYS VAL THR PRO THR ASN THR ASP LYS ASP GLY ASN PRO SEQRES 4 B 108 ALA ASN ILE PRO ASP GLY THR LYS PHE GLU LYS ASP PRO SEQRES 5 B 108 ASP ALA PRO SER TRP VAL GLU VAL ASP PRO ASN THR GLY SEQRES 6 B 108 GLU LEU THR VAL ALA PRO PRO GLU GLY THR PRO SER GLY SEQRES 7 B 108 GLY HIS GLU ILE LYS VAL LYS VAL THR TYR PRO ASP GLY SEQRES 8 B 108 SER THR ASP GLU VAL PRO VAL THR VAL LYS VAL SER ASP SEQRES 9 B 108 PRO THR THR PRO HET SO4 A1301 5 HET SO4 A1302 5 HET SO4 A1303 5 HET NA B1301 1 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 NA NA 1+ FORMUL 7 HOH *381(H2 O) HELIX 1 AA1 GLN A 1166 HIS A 1171 5 6 HELIX 2 AA2 GLN B 1166 HIS B 1171 5 6 SHEET 1 AA1 4 VAL A1178 VAL A1180 0 SHEET 2 AA1 4 THR A1253 VAL A1262 1 O LYS A1261 N VAL A1178 SHEET 3 AA1 4 GLY A1238 THR A1247 -1 N VAL A1246 O ASP A1254 SHEET 4 AA1 4 LYS A1207 LYS A1210 -1 N GLU A1209 O LYS A1245 SHEET 1 AA2 3 ASN A1186 VAL A1188 0 SHEET 2 AA2 3 LEU A1227 VAL A1229 -1 O LEU A1227 N VAL A1188 SHEET 3 AA2 3 VAL A1218 VAL A1220 -1 N GLU A1219 O THR A1228 SHEET 1 AA3 2 ASN B1172 LYS B1174 0 SHEET 2 AA3 2 THR B1191 THR B1193 -1 O THR B1191 N LYS B1174 SHEET 1 AA4 4 VAL B1178 VAL B1180 0 SHEET 2 AA4 4 THR B1253 VAL B1262 1 O LYS B1261 N VAL B1178 SHEET 3 AA4 4 GLY B1238 THR B1247 -1 N VAL B1246 O ASP B1254 SHEET 4 AA4 4 LYS B1207 GLU B1209 -1 N LYS B1207 O THR B1247 SHEET 1 AA5 3 ASN B1186 VAL B1188 0 SHEET 2 AA5 3 LEU B1227 VAL B1229 -1 O LEU B1227 N VAL B1188 SHEET 3 AA5 3 VAL B1218 VAL B1220 -1 N GLU B1219 O THR B1228 LINK O HIS B1171 NA NA B1301 1555 1555 2.88 LINK OD1 ASN B1172 NA NA B1301 1555 1555 2.96 LINK NA NA B1301 O HOH B1401 1555 1555 2.16 LINK NA NA B1301 O HOH B1546 1555 1555 2.94 LINK NA NA B1301 O HOH B1565 1555 1555 2.74 SITE 1 AC1 6 ASP A1204 GLY A1205 THR A1206 ASN A1223 SITE 2 AC1 6 HOH A1401 HOH A1406 SITE 1 AC2 4 HOH A1416 HOH A1421 HOH A1486 HOH A1493 SITE 1 AC3 6 HIS A1240 HOH A1409 HOH A1508 ASP B1196 SITE 2 AC3 6 ASN B1198 LYS B1243 SITE 1 AC4 7 ALA B1168 HIS B1171 ASN B1172 ASP B1254 SITE 2 AC4 7 HOH B1401 HOH B1546 HOH B1565 CRYST1 43.370 147.810 56.620 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023057 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017662 0.00000